Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20552 Avicennia marina HOM05D007065 ORTHO05D008960 3.2e-96 355.1 187 100.0
MSTRG.17000 Avicennia marina HOM05D007065 ORTHO05D008960 2.0e-69 266.2 185 77.3
SGA_v2.0_scaffold4G02459 Striga asiatica HOM05D007065 ORTHO05D008960 5.5e-56 221.5 185 70.3
Migut.B01254 Erythranthe guttata HOM05D007065 ORTHO05D008960 2.0e-50 203.0 185 63.8
SalBow5G3075 Salvia bowleyana HOM05D007065 ORTHO05D008960 3.1e-43 179.1 166 63.3
SalBow5G0133 Salvia bowleyana HOM05D007065 ORTHO05D008960 7.7e-42 174.5 170 60.0
unitig_22.g5430 Utricularia gibba HOM05D007065 ORTHO05D008960 7.2e-40 167.9 185 58.4
PGSC0003DMG400006766 Solanum tuberosum HOM05D007065 ORTHO05D008960 1.3e-36 157.1 187 54.0
Sopen01g035020 Solanum pennellii HOM05D007065 ORTHO05D008960 1.7e-36 156.8 184 54.3
Solyc01g088140.3 Solanum lycopersicum HOM05D007065 ORTHO05D008960 6.4e-36 154.8 184 54.3
Cc02_g30050 Coffea canephora HOM05D007065 ORTHO05D008960 1.4e-35 153.7 198 53.5
MD07G1026200 Malus domestica HOM05D007065 ORTHO05D008960 4.1e-35 152.1 184 51.6
Dinv05022 Davidia involucrata HOM05D007065 ORTHO05D008960 2.0e-34 149.8 185 50.3
Oeu027356.1 Olea europaea HOM05D007065 ORTHO05D008960 2.7e-34 149.4 116 68.1
GSVIVG01001464001 Vitis vinifera HOM05D007065 ORTHO05D008960 3.5e-34 149.1 187 50.8
Lj3g0026300 Lotus japonicus HOM05D007065 ORTHO05D008960 4.6e-34 148.7 180 49.4
QL04p012215 Quercus lobata HOM05D007065 ORTHO05D008960 5.9e-34 148.3 186 51.6
CiPaw.13G009300 Carya illinoinensis HOM05D007065 ORTHO05D008960 7.8e-34 147.9 190 51.6
MD02G1298000 Malus domestica HOM05D007065 ORTHO05D008960 6.6e-33 144.8 184 50.5
MBI13_g15309_MAGBIO Magnolia biondii HOM05D007065 ORTHO05D008960 1.9e-32 143.3 101 72.3
EL10Ac2g02888 Beta vulgaris HOM05D007065 ORTHO05D008960 4.3e-32 142.1 187 49.7
Lalb_Chr04g0263741 Lupinus albus HOM05D007065 ORTHO05D008960 4.3e-32 142.1 185 48.1
Lsat_1_v5_gn_1_99921 Lactuca sativa HOM05D007065 ORTHO05D008960 1.6e-31 140.2 181 49.2
Psat5g211000 Pisum sativum HOM05D007065 ORTHO05D008960 1.6e-31 140.2 119 63.0
Nn2g15140 Nelumbo nucifera HOM05D007065 ORTHO05D008960 2.1e-31 139.8 185 49.7
Peaxi162Scf01115g00011 Petunia axillaris HOM05D007065 ORTHO05D008960 3.6e-31 139.0 114 69.3
Nitab4.5_0016351g0020 Nicotiana tabacum HOM05D007065 ORTHO05D008960 4.7e-31 138.7 102 73.5
Manes.04G064100 Manihot esculenta HOM05D007065 ORTHO05D008960 6.2e-31 138.3 188 48.4
Actinidia19434 Actinidia chinensis HOM05D007065 ORTHO05D008960 1.0e-30 137.5 197 47.2
Aa31LG11G7640 Aethionema arabicum HOM05D007065 ORTHO05D008960 1.0e-30 137.5 184 48.9
Nitab4.5_0000316g0330 Nicotiana tabacum HOM05D007065 ORTHO05D008960 1.0e-30 137.5 183 50.8
Peaxi162Scf01115g00110 Petunia axillaris HOM05D007065 ORTHO05D008960 1.8e-30 136.7 179 50.8
PGR031G2384 Punica granatum HOM05D007065 ORTHO05D008960 1.8e-30 136.7 189 48.7
Aqoxy1G00221 Aquilegia oxysepala HOM05D007065 ORTHO05D008960 5.2e-30 135.2 184 45.1
Medtr3g436080 Medicago truncatula HOM05D007065 ORTHO05D008960 8.9e-30 134.4 182 50.0
Ca_14187_v3 Cicer arietinum L. HOM05D007065 ORTHO05D008960 1.2e-29 134.0 186 47.8
Phvul.005G034300 Phaseolus vulgaris HOM05D007065 ORTHO05D008960 1.5e-29 133.7 117 61.5
Oeu049459.1 Olea europaea HOM05D007065 ORTHO05D008960 2.6e-29 132.9 104 71.2
Hund13309 Selenicereus undatus HOM05D007065 ORTHO05D008960 3.4e-29 132.5 113 62.8
CsaV3_5G024860 Cucumis sativus L. HOM05D007065 ORTHO05D008960 4.4e-29 132.1 180 50.6
PSO339G2565 Papaver somniferum HOM05D007065 ORTHO05D008960 4.4e-29 132.1 180 48.3
Actinidia06280 Actinidia chinensis HOM05D007065 ORTHO05D008960 5.8e-29 131.7 185 49.7
Cfa010837 Carpinus fangiana HOM05D007065 ORTHO05D008960 7.5e-29 131.3 170 51.2
MELO3C005114.2 Cucumis melo HOM05D007065 ORTHO05D008960 7.5e-29 131.3 180 50.0
Sc10g0004180 Simmondsia chinensis HOM05D007065 ORTHO05D008960 2.9e-28 129.4 120 61.7
Eucgr.G03272 Eucalyptus grandis HOM05D007065 ORTHO05D008960 3.7e-28 129.0 187 46.0
Glyma.11G157140 Glycine max HOM05D007065 ORTHO05D008960 4.9e-28 128.6 116 60.3
PSO384G3763 Papaver somniferum HOM05D007065 ORTHO05D008960 8.3e-28 127.9 179 46.4
Rhsim07G0061200 Rhododendron simsii HOM05D007065 ORTHO05D008960 1.9e-27 126.7 199 47.2
AUR62037250 Chenopodium quinoa HOM05D007065 ORTHO05D008960 2.4e-27 126.3 114 61.4
arahy.Tifrunner.gnm1.ann1.D1ESAM Arachis hypogaea HOM05D007065 ORTHO05D008960 5.4e-27 125.2 183 45.9
ClCG01G007790 Citrullus lanatus HOM05D007065 ORTHO05D008960 5.4e-27 125.2 177 48.0
THA.LOC104819111 Tarenaya hassleriana HOM05D007065 ORTHO05D008960 5.4e-27 125.2 189 48.1
ATR1134G106 Amborella trichopoda HOM05D007065 ORTHO05D008960 9.2e-27 124.4 181 48.1
HanXRQChr01g0020971 Helianthus annuus HOM05D007065 ORTHO05D008960 2.7e-26 122.9 180 45.0
AL6G24090 Arabidopsis lyrata HOM05D007065 ORTHO05D008960 6.0e-26 121.7 115 60.0
AUR62030541 Chenopodium quinoa HOM05D007065 ORTHO05D008960 1.3e-25 120.6 113 59.3
Carub.0006s1163 Capsella rubella HOM05D007065 ORTHO05D008960 1.7e-25 120.2 185 45.9
A10p24790 Brassica napus HOM05D007065 ORTHO05D008960 2.3e-25 119.8 185 46.5
ECA248G1453 Erigeron canadensis HOM05D007065 ORTHO05D008960 3.9e-25 119.0 190 42.1
arahy.Tifrunner.gnm1.ann1.ZUZF0V Arachis hypogaea HOM05D007065 ORTHO05D008960 5.0e-25 118.6 176 46.0
BolC9t59205H Brassica oleracea HOM05D007065 ORTHO05D008960 5.0e-25 118.6 186 46.2
C09p63610 Brassica napus HOM05D007065 ORTHO05D008960 6.6e-25 118.2 108 63.0
A02p01960 Brassica napus HOM05D007065 ORTHO05D008960 8.6e-25 117.9 187 45.5
BraA10t44543Z Brassica rapa HOM05D007065 ORTHO05D008960 1.1e-24 117.5 185 44.9
FvH4_7g02000 Fragaria vesca HOM05D007065 ORTHO05D008960 1.9e-24 116.7 186 44.6
Sp6g30550 Schrenkiella parvula HOM05D007065 ORTHO05D008960 1.9e-24 116.7 186 44.6
Sed0022285 Sechium edule HOM05D007065 ORTHO05D008960 9.5e-24 114.4 180 47.2
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 1.6e-23 113.6 149 49.7
AT5G13470 Arabidopsis thaliana HOM05D007065 ORTHO05D008960 2.1e-23 113.2 185 45.4
FAN01G0916 Fragaria x ananassa HOM05D007065 ORTHO05D008960 2.1e-23 113.2 184 42.9
FAN06G0835 Fragaria x ananassa HOM05D007065 ORTHO05D008960 2.1e-23 113.2 184 44.0
Thecc.10G002700 Theobroma cacao HOM05D007065 ORTHO05D008960 4.7e-23 112.1 123 54.5
vmacro13712 Vaccinium macrocarpon HOM05D007065 ORTHO05D008960 4.7e-23 112.1 172 45.9
BraA02t05169Z Brassica rapa HOM05D007065 ORTHO05D008960 6.2e-23 111.7 187 43.9
Cpa.g.sc197.20 Carica papaya HOM05D007065 ORTHO05D008960 8.1e-23 111.3 183 45.4
DCAR_022363 Daucus carota HOM05D007065 ORTHO05D008960 8.1e-23 111.3 189 45.5
BcaNung01150 Brassica carinata HOM05D007065 ORTHO05D008960 1.1e-22 110.9 185 43.2
COL.COLO4_19334 Corchorus olitorius HOM05D002616 ORTHO05D003192 1.4e-22 110.5 154 48.1
TAR636G1654 Trochodendron aralioides HOM05D007065 ORTHO05D008960 1.8e-22 110.2 104 61.5
C02p06180 Brassica napus HOM05D007065 ORTHO05D008960 4.0e-22 109.0 185 43.2
BolC2t06559H Brassica oleracea HOM05D007065 ORTHO05D008960 4.0e-22 109.0 185 43.2
Potri.003G203900 Populus trichocarpa HOM05D007065 ORTHO05D008960 5.2e-22 108.6 190 42.1
Potri.001G020700 Populus trichocarpa HOM05D007065 ORTHO05D008960 6.8e-22 108.2 194 43.8
TPR.G15470 Trifolium pratense HOM05D007065 ORTHO05D008960 6.8e-22 108.2 100 60.0
RcHm_v2.0_Chr1g0318991 Rosa chinensis HOM05D007065 ORTHO05D008960 1.5e-21 107.1 187 43.3
Ah.12g065220 Amaranthus hybridus HOM05D007065 ORTHO05D008960 2.0e-21 106.7 138 48.6
Duzib128G1478 Durio zibethinus HOM05D007065 ORTHO05D008960 2.0e-21 106.7 188 44.1
Duzib114G0680 Durio zibethinus HOM05D007065 ORTHO05D008960 2.6e-21 106.3 190 42.6
VMungo1080G1068 Vigna mungo HOM05D007065 ORTHO05D008960 2.6e-21 106.3 106 57.5
CDE04G3117 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 7.5e-21 104.8 188 41.0
Dinv32064 Davidia involucrata HOM05D007065 ORTHO05D008960 1.7e-20 103.6 164 48.2
HPP92_001654 Vanilla planifolia HOM05D007065 ORTHO05D008960 1.1e-19 100.9 187 40.1
Haze_03101 Corylus avellana HOM05D007065 ORTHO05D008960 4.1e-19 99.0 70 74.3
Hma1.2p1_0579F.1_g182650 Hydrangea macrophylla HOM05D007065 ORTHO05D008960 4.1e-19 99.0 164 44.5
TWI09G1481 Tripterygium wilfordii HOM05D007065 ORTHO05D008960 1.2e-18 97.4 123 47.2
CDE07G0125 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 2.1e-18 96.7 181 40.3
Gohir.D13G013700 Gossypium hirsutum HOM05D007065 ORTHO05D008960 2.1e-18 96.7 98 55.1
Sabra01G0015300 Salix brachista HOM05D007065 ORTHO05D008960 4.6e-18 95.5 189 42.3
Lj9P644T43 Lonicera japonica HOM05D007065 ORTHO05D008960 1.0e-17 94.4 109 55.0
FAN28G1096 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.7e-17 93.6 82 58.5
CANSAT80G2361 Cannabis sativa HOM05D007065 ORTHO05D008960 8.6e-17 91.3 65 67.7
Thecc.03G067800 Theobroma cacao HOM05D007065 ORTHO05D008960 1.5e-16 90.5 96 53.1
FAN03G0341 Fragaria x ananassa HOM05D007065 ORTHO05D008960 3.6e-15 85.9 167 41.3
CSS0014876 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D000473 1.1e-14 84.3 77 59.7
Thhalv10014938m.g Eutrema salsugineum HOM05D007065 ORTHO05D008960 3.1e-14 82.8 176 42.6
AagrBONN_evm.TU.Sc2ySwM_228.825 Anthoceros agrestis HOM05D007065 ORTHO05D008960 8.4e-12 74.7 177 38.4
Mapoly0014s0118 Marchantia polymorpha HOM05D007065 ORTHO05D008960 3.2e-11 72.8 185 36.2
Os01g0939400 Oryza sativa ssp. japonica HOM05D007065 ORTHO05D008960 2.1e-10 70.1 100 41.0
Gohir.A13G012500 Gossypium hirsutum HOM05D007065 ORTHO05D008960 2.7e-10 69.7 78 53.8
Gorai.013G014700 Gossypium raimondii HOM05D007065 ORTHO05D008960 7.8e-10 68.2 78 55.1
Zm00001eb141670 Zea mays HOM05D007065 ORTHO05D008960 1.0e-09 67.8 110 39.1


User provided reference genes

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