Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 8.0e-106 387.1 196 100.0
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.6e-64 249.2 191 66.0
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.9e-63 245.7 191 65.4
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 4.9e-63 245.0 191 66.5
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 6.4e-63 244.6 188 64.4
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 6.6e-60 234.6 189 65.6
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 1.9e-51 206.5 186 55.9
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 2.5e-51 206.1 186 56.5
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 7.3e-51 204.5 169 60.9
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 1.2e-50 203.8 194 55.2
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 2.8e-50 202.6 174 59.2
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 3.6e-50 202.2 182 56.0
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 3.6e-50 202.2 188 55.9
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 4.7e-50 201.8 186 55.4
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 6.2e-50 201.4 192 54.2
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 8.1e-50 201.1 188 56.4
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 2.0e-48 196.4 182 55.5
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 7.6e-48 194.5 188 54.8
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 2.9e-47 192.6 175 56.6
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 8.4e-47 191.0 178 56.2
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 7.1e-46 188.0 175 55.4
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 1.6e-45 186.8 184 55.4
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 1.0e-44 184.1 185 54.6
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.7e-44 183.3 192 50.0
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 3.9e-44 182.2 174 56.9
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 5.1e-44 181.8 185 53.5
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 8.7e-44 181.0 195 52.3
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.1e-43 180.6 196 51.5
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.5e-43 180.3 180 56.7
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 3.3e-43 179.1 185 53.0
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 3.3e-43 179.1 182 52.7
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 4.3e-43 178.7 180 52.8
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 5.6e-43 178.3 180 53.3
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 9.6e-43 177.6 189 55.6
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 1.6e-42 176.8 189 55.0
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 1.6e-42 176.8 165 58.2
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 4.8e-42 175.3 163 57.1
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 8.1e-42 174.5 168 55.4
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 1.1e-41 174.1 181 52.5
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.4e-41 172.9 192 51.0
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 3.1e-41 172.6 183 53.6
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 4.0e-41 172.2 169 50.9
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 4.0e-41 172.2 180 56.1
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 5.3e-41 171.8 195 50.3
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 5.3e-41 171.8 179 50.3
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 5.3e-41 171.8 169 55.0
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 5.3e-41 171.8 177 54.2
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 1.2e-40 170.6 184 48.4
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.5e-40 170.2 166 55.4
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 1.5e-40 170.2 155 55.5
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 2.0e-40 169.9 195 49.7
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.0e-40 169.9 181 53.6
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 3.4e-40 169.1 188 48.9
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 4.5e-40 168.7 168 54.2
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 4.5e-40 168.7 166 54.8
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.5e-40 168.7 166 54.8
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 4.5e-40 168.7 171 54.4
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 7.6e-40 167.9 182 52.7
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.7e-39 166.8 153 56.2
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 2.9e-39 166.0 166 52.4
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 3.8e-39 165.6 174 54.6
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 1.9e-38 163.3 191 48.7
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 1.9e-38 163.3 183 49.2
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 2.4e-38 162.9 178 52.8
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 4.2e-38 162.2 187 47.6
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 4.2e-38 162.2 181 49.7
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 4.2e-38 162.2 184 52.2
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 5.4e-38 161.8 181 49.2
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 7.1e-38 161.4 189 49.2
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 2.7e-37 159.5 185 49.2
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 4.6e-37 158.7 181 49.2
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 6.0e-37 158.3 181 49.2
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 6.0e-37 158.3 181 50.8
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 6.0e-37 158.3 160 54.4
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 2.3e-36 156.4 168 50.0
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 3.0e-36 156.0 153 54.2
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 6.7e-36 154.8 136 56.6
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 8.7e-36 154.5 194 45.4
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 1.5e-35 153.7 165 50.3
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 3.3e-35 152.5 164 51.8
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 5.6e-35 151.8 164 52.4
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 6.2e-34 148.3 191 49.7
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 8.1e-34 147.9 149 51.0
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 1.4e-33 147.1 168 50.6
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 1.8e-33 146.7 165 50.3
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 1.5e-32 143.7 175 47.4
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 1.5e-32 143.7 172 46.5
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 2.6e-32 142.9 140 52.1
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 3.4e-32 142.5 140 52.1
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 5.8e-32 141.7 184 43.5
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 7.6e-32 141.4 176 48.9
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 9.9e-32 141.0 184 42.4
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 1.3e-31 140.6 120 58.3
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 8.4e-31 137.9 162 47.5
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 8.4e-31 137.9 165 47.3
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.2e-29 134.0 139 47.5
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 1.2e-29 134.0 160 45.0
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 1.6e-29 133.7 174 43.1
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 2.1e-29 133.3 167 45.5
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.5e-29 132.5 181 44.8
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 4.6e-29 132.1 164 44.5
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 6.0e-29 131.7 170 42.9
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 6.0e-29 131.7 162 43.8
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 6.0e-29 131.7 181 44.8
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 1.0e-28 131.0 179 43.0
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 1.3e-28 130.6 167 42.5
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 1.8e-28 130.2 132 48.5
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 2.3e-28 129.8 187 40.1
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 3.9e-28 129.0 131 55.0
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 3.9e-28 129.0 171 45.6
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 5.1e-28 128.6 154 42.9
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 6.7e-28 128.3 182 46.2
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.1e-27 127.5 165 43.6
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.1e-27 127.5 182 40.7
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 1.1e-27 127.5 167 42.5
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 3.3e-27 125.9 151 46.4
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 4.3e-27 125.6 142 50.0
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 4.3e-27 125.6 193 40.9
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 4.3e-27 125.6 248 35.9
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 4.3e-27 125.6 177 41.8
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 5.6e-27 125.2 171 43.3
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 7.4e-27 124.8 90 62.2
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 2.1e-26 123.2 126 46.0
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 2.8e-26 122.9 139 46.8
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 6.2e-26 121.7 133 51.9
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 5.3e-25 118.6 112 50.0
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 6.9e-25 118.2 166 41.6
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 6.9e-25 118.2 133 49.6
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 9.0e-25 117.9 182 40.7
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.2e-24 117.5 144 44.4
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 2.0e-24 116.7 176 40.3
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 2.6e-24 116.3 166 41.0
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 5.8e-24 115.2 86 64.0
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 6.5e-23 111.7 150 42.0
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 2.5e-22 109.8 139 44.6
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 6.0e-21 105.1 100 48.0
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 1.0e-20 104.4 152 36.8
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.3e-19 99.0 88 50.0
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 5.7e-19 98.6 146 41.1
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 1.6e-18 97.1 180 36.7
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 1.6e-18 97.1 79 59.5
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 3.7e-18 95.9 145 37.9
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 4.8e-18 95.5 182 33.0
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 6.3e-18 95.1 114 45.6
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 1.4e-17 94.0 67 61.2
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.4e-17 93.2 78 55.1
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 4.1e-17 92.4 76 55.3
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 7.7e-16 88.2 117 40.2
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 7.2e-14 81.6 112 41.1
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 1.8e-12 77.0 98 44.9
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 3.0e-12 76.3 101 40.6
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 5.1e-12 75.5 126 34.9
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 6.7e-12 75.1 182 31.9
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 7.4e-11 71.6 64 51.6
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 2.2e-10 70.1 155 31.0
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 1.1e-09 67.8 86 39.5
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 5.3e-09 65.5 85 45.9
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 6.9e-09 65.1 89 43.8
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.5e-08 63.9 116 36.2
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 2.6e-08 63.2 59 45.8
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 3.8e-07 59.3 93 38.7
Aa31LG2G13200 Aethionema arabicum HOM05D000404 ORTHO05D001765 7.2e-06 55.1 57 52.6
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 7.2e-06 55.1 92 42.4
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 9.4e-06 54.7 95 40.0


User provided reference genes

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