Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 2.6e-300 1034.6 539 100.0
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.2e-161 573.2 529 61.8
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 3.0e-147 526.2 529 59.0
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 2.8e-145 519.6 542 55.7
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 1.2e-143 514.2 547 58.7
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 1.3e-142 510.8 548 56.4
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 2.0e-138 496.9 560 55.0
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 4.8e-129 465.7 552 53.3
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 8.3e-129 464.9 489 56.2
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 2.4e-128 463.4 550 53.1
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 7.0e-128 461.8 489 56.0
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 6.8e-123 445.3 546 50.9
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 1.5e-122 444.1 550 49.5
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 1.6e-119 434.1 545 49.9
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 4.7e-116 422.5 358 63.4
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 1.4e-115 421.0 580 48.3
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 9.8e-114 414.8 544 48.5
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 1.3e-113 414.5 525 48.0
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 3.7e-113 412.9 544 49.1
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 1.9e-112 410.6 363 59.5
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 3.2e-112 409.8 416 57.5
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 2.0e-111 407.1 537 49.7
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 4.6e-111 406.0 537 49.0
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 2.3e-110 403.7 297 69.0
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 8.6e-110 401.7 427 54.1
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 1.5e-109 401.0 395 59.0
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 3.3e-109 399.8 413 55.0
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 4.3e-109 399.4 488 50.8
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 4.3e-109 399.4 415 54.2
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 7.3e-109 398.7 577 46.3
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 7.3e-109 398.7 364 59.1
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 1.2e-108 397.9 319 64.3
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 2.8e-108 396.7 539 47.5
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 4.7e-108 396.0 607 43.2
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 6.2e-108 395.6 413 55.4
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 8.0e-108 395.2 359 60.7
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 8.0e-108 395.2 561 47.1
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 8.0e-108 395.2 361 58.7
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 1.1e-107 394.8 545 48.4
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.8e-107 394.0 370 58.1
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 2.3e-107 393.7 356 59.3
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 6.8e-107 392.1 444 50.9
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 6.8e-107 392.1 453 53.9
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 1.2e-106 391.3 540 46.9
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 1.2e-106 391.3 392 58.4
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 1.5e-106 391.0 546 48.9
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 2.0e-106 390.6 540 47.4
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 4.4e-106 389.4 370 58.1
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 7.5e-106 388.7 358 59.2
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 9.8e-106 388.3 442 51.8
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.3e-105 387.9 358 57.8
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 2.9e-105 386.7 355 57.7
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 3.7e-105 386.3 536 47.6
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 4.9e-105 386.0 418 55.7
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 4.9e-105 386.0 318 61.9
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 6.4e-105 385.6 359 57.1
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 6.4e-105 385.6 538 47.4
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 6.4e-105 385.6 403 55.3
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 8.3e-105 385.2 374 57.0
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 1.1e-104 384.8 373 56.8
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 5.4e-104 382.5 514 45.9
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 1.6e-103 380.9 366 57.7
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 2.7e-103 380.2 390 55.9
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 3.5e-103 379.8 390 53.3
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 6.0e-103 379.0 324 62.0
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 7.8e-103 378.6 358 58.4
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 2.3e-102 377.1 386 54.4
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 3.0e-102 376.7 630 42.2
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 1.1e-101 374.8 539 44.5
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 3.3e-101 373.2 402 52.0
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 9.5e-101 371.7 387 54.0
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 3.6e-100 369.8 417 51.3
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.1e-99 368.2 596 43.5
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 1.1e-99 368.2 480 50.6
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 2.6e-98 363.6 387 54.0
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 1.7e-97 360.9 546 45.8
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 2.2e-97 360.5 370 53.5
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 4.1e-96 356.3 550 45.1
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 9.2e-96 355.1 401 50.9
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.0e-94 351.7 419 49.6
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 1.7e-94 350.9 409 49.9
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 3.9e-94 349.7 417 48.7
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 8.6e-94 348.6 437 48.3
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 8.6e-94 348.6 398 50.0
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 1.2e-92 344.7 297 58.6
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 2.8e-92 343.6 428 48.1
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 2.4e-91 340.5 365 55.3
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 3.1e-91 340.1 477 46.1
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 2.9e-89 333.6 469 44.8
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 1.0e-86 325.1 423 50.1
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 1.0e-86 325.1 343 55.7
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 1.3e-84 318.2 852 32.9
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 2.1e-84 317.4 297 55.9
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 3.6e-84 316.6 272 61.0
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 3.8e-81 306.6 429 43.1
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 3.0e-70 270.4 415 44.3
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 4.8e-68 263.1 367 42.0
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 3.8e-65 253.4 292 49.7
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 1.2e-63 248.4 423 41.1
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 1.9e-61 241.1 298 44.6
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 5.7e-61 239.6 286 47.6
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 1.5e-58 231.5 530 33.8
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 5.0e-57 226.5 527 33.8
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.3e-52 211.8 173 65.9
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 2.2e-52 211.1 202 54.0
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 4.3e-45 186.8 277 44.8
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 1.2e-42 178.7 249 46.6
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 2.0e-42 177.9 167 58.7
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 1.1e-40 172.2 255 42.0
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 7.2e-40 169.5 102 82.4
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 1.8e-38 164.9 125 68.0
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 8.8e-38 162.5 287 41.1
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 4.5e-34 150.2 143 55.2
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 5.5e-32 143.3 227 36.1
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 6.1e-31 139.8 128 55.5
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 8.2e-28 129.4 196 40.3
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 8.2e-28 129.4 159 49.7
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.8e-27 128.3 125 57.6
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.8e-27 128.3 125 57.6
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 3.5e-26 124.0 118 56.8
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 2.0e-21 108.2 62 82.3
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 9.8e-21 105.9 89 60.7
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 3.6e-15 87.4 64 62.5
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 6.1e-15 86.7 52 76.9
Actinidia19446 Actinidia chinensis HOM05D005646 ORTHO05D006828 2.8e-12 77.8 228 35.5
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 5.4e-11 73.6 130 38.5
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 9.1e-11 72.8 296 27.0
CBR_g38389 Chara braunii HOM05D005646 ORTHO05D006828 4.5e-10 70.5 151 31.8
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 4.5e-10 70.5 45 73.3
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 1.0e-09 69.3 68 52.9
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 5.0e-09 67.0 48 64.6
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 4.7e-07 60.5 160 34.4
GSVIVG01038299001 Vitis vinifera HOM05D005646 ORTHO05D006828 5.2e-06 57.0 43 65.1


User provided reference genes

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