Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.6e-242 842.4 440 100.0
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 7.4e-168 594.3 448 69.9
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 3.3e-160 568.9 447 69.6
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 4.6e-154 548.5 450 64.4
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 1.3e-135 487.3 500 55.8
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 3.8e-124 449.1 436 56.4
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 6.3e-119 431.8 436 53.9
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.1e-115 421.0 460 53.0
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 5.5e-115 418.7 469 53.7
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.2e-114 417.5 471 54.1
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.2e-112 411.0 474 52.7
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.2e-112 411.0 470 53.4
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 5.7e-112 408.7 475 51.6
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 3.2e-110 402.9 472 50.0
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 5.4e-110 402.1 467 49.5
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 4.5e-109 399.1 460 51.5
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 4.3e-107 392.5 473 50.3
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 4.3e-107 392.5 497 47.9
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 5.6e-107 392.1 463 50.1
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.2e-106 391.0 478 48.1
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 1.2e-106 391.0 475 49.3
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.1e-106 390.2 469 50.3
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 2.1e-106 390.2 456 48.5
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.8e-106 389.8 469 50.5
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.8e-106 389.8 465 50.8
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 3.6e-106 389.4 468 48.7
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 4.7e-106 389.0 461 50.3
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.1e-106 388.7 468 48.9
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 6.1e-106 388.7 465 48.0
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 6.1e-106 388.7 473 49.7
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 8.0e-106 388.3 471 49.3
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 1.0e-105 387.9 471 49.3
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 1.0e-105 387.9 478 47.9
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.4e-105 387.5 472 50.4
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.4e-105 387.5 483 49.9
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 4.0e-105 386.0 478 50.8
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 4.0e-105 386.0 465 48.4
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 6.8e-105 385.2 478 47.9
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.2e-104 384.4 467 50.7
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.2e-104 384.4 468 51.7
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.3e-103 380.9 452 51.1
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 1.7e-103 380.6 469 48.6
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 6.4e-103 378.6 464 49.4
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 6.4e-103 378.6 464 49.4
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 6.4e-103 378.6 463 50.8
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.1e-102 377.9 478 46.7
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.9e-102 377.1 464 49.6
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 3.2e-102 376.3 474 49.6
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 5.4e-102 375.6 468 47.9
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 5.4e-102 375.6 464 48.5
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 7.0e-102 375.2 466 48.1
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 7.0e-102 375.2 466 47.9
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 7.0e-102 375.2 465 49.2
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 2.0e-101 373.6 468 48.7
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 3.5e-101 372.9 480 46.7
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 6.0e-101 372.1 467 47.8
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 1.3e-100 370.9 485 47.4
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 3.9e-100 369.4 464 48.5
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 5.0e-100 369.0 470 47.9
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.1e-99 367.9 465 47.3
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.5e-99 367.5 392 52.3
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 2.5e-99 366.7 479 47.4
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 2.5e-99 366.7 472 48.7
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 5.6e-99 365.5 524 44.7
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 7.3e-99 365.2 469 49.0
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 2.1e-98 363.6 472 45.6
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 2.1e-98 363.6 457 49.0
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.7e-98 362.5 477 45.3
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 8.0e-98 361.7 392 52.6
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 3.1e-97 359.8 374 52.1
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 1.5e-96 357.5 477 46.5
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 2.6e-96 356.7 382 50.3
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 4.4e-96 355.9 479 47.4
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 2.4e-94 350.1 474 45.4
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 9.2e-94 348.2 350 53.1
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 6.0e-93 345.5 450 47.3
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 6.0e-93 345.5 456 46.3
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 1.0e-92 344.7 313 59.4
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.3e-92 344.4 460 46.3
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.1e-91 341.3 461 46.2
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.9e-91 340.5 377 50.1
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.5e-91 340.1 461 46.6
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 5.6e-91 339.0 461 45.3
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 7.3e-91 338.6 465 47.3
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 7.3e-91 338.6 461 46.2
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 2.8e-90 336.7 469 45.2
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 1.8e-89 334.0 602 39.7
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.8e-89 334.0 459 44.9
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.2e-88 331.3 380 49.2
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 1.5e-88 330.9 335 52.2
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 2.0e-88 330.5 464 45.0
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 2.6e-88 330.1 381 47.8
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 2.6e-88 330.1 382 46.9
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 5.8e-88 328.9 466 43.8
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 7.6e-88 328.6 423 44.9
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 9.9e-88 328.2 465 44.3
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.3e-87 327.8 367 49.3
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.7e-87 327.4 384 48.4
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 4.9e-87 325.9 466 43.8
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 4.1e-86 322.8 458 43.9
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 5.4e-86 322.4 370 50.0
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 5.4e-86 322.4 465 44.3
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 7.1e-86 322.0 457 43.3
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.6e-85 320.9 471 42.5
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.6e-85 320.9 464 44.6
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 3.5e-85 319.7 412 46.1
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.6e-85 319.3 471 42.5
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 1.7e-84 317.4 533 39.8
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 3.9e-84 316.2 450 44.0
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 5.1e-84 315.8 459 43.1
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 6.6e-84 315.5 461 42.5
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.9e-83 313.9 477 43.2
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 3.3e-83 313.2 459 42.9
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 3.3e-83 313.2 416 46.9
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 4.3e-83 312.8 471 42.7
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 9.6e-83 311.6 408 46.3
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.8e-82 310.1 477 42.6
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.8e-82 310.1 476 42.6
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.6e-82 309.7 323 51.4
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 8.1e-82 308.5 474 42.6
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 3.4e-80 303.1 477 42.3
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 3.8e-79 299.7 467 42.0
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 3.2e-78 296.6 415 42.7
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 5.4e-78 295.8 481 41.4
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.2e-77 294.7 366 43.2
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 3.5e-77 293.1 440 42.3
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 4.6e-77 292.7 385 43.9
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 3.0e-76 290.0 467 40.5
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 5.6e-75 285.8 312 49.4
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 7.3e-75 285.4 461 40.3
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 2.8e-74 283.5 282 53.2
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 4.0e-73 279.6 355 45.9
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 8.7e-68 261.9 368 45.9
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.5e-67 261.2 254 54.7
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 9.6e-67 258.5 357 42.9
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 2.8e-66 256.9 390 41.3
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 6.9e-65 252.3 215 61.4
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 4.5e-64 249.6 371 42.9
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 9.9e-64 248.4 311 43.1
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.3e-63 248.1 300 46.7
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.7e-63 247.7 313 44.1
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 6.4e-63 245.7 417 40.0
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.1e-61 240.7 373 41.8
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 4.6e-61 239.6 390 36.9
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.1e-59 235.0 392 39.5
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 8.1e-58 228.8 366 40.7
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.4e-56 223.4 306 40.2
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 2.5e-54 217.2 457 35.0
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.6e-53 214.5 445 37.1
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.0e-52 211.8 294 40.1
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.5e-51 208.0 372 41.1
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 5.7e-51 206.1 145 71.0
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 2.8e-50 203.8 314 39.2
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 8.2e-50 202.2 205 50.7
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 7.6e-48 195.7 453 32.0
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.7e-47 194.5 304 43.1
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 5.0e-47 193.0 198 53.0
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.0e-44 185.3 263 43.7
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.3e-44 184.1 204 52.9
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 4.3e-43 179.9 366 36.3
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 5.7e-43 179.5 279 43.0
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 3.1e-41 173.7 395 32.9
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 7.9e-37 159.1 332 34.6
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 4.3e-35 153.3 140 57.1
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 2.0e-32 144.4 383 31.1
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.6e-32 144.1 103 72.8
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 1.0e-28 132.1 207 39.6
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 6.3e-26 122.9 106 56.6
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 4.5e-24 116.7 204 37.3
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 8.5e-23 112.5 190 37.9
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.5e-19 101.7 206 36.4
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 5.7e-19 99.8 74 67.6
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 7.0e-17 92.8 84 61.9
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 4.5e-16 90.1 81 59.3
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 2.5e-14 84.3 106 43.4
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 5.7e-11 73.2 64 60.9
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 1.3e-07 62.0 52 63.5
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 2.9e-07 60.8 119 36.1


User provided reference genes

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