Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 2339.3 1199 100.0
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1834.7 1197 77.8
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1822.4 1199 77.8
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1794.2 1208 76.1
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1716.4 1206 72.6
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1674.8 1209 70.4
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1660.6 1207 70.4
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1660.2 1203 70.2
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1653.3 1209 69.8
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1652.5 1201 70.1
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1650.2 1207 69.9
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1642.9 1200 69.0
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1640.6 1205 68.1
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1640.6 1198 69.4
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1640.2 1206 69.2
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1637.9 1204 68.4
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1637.5 1206 69.2
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1635.2 1197 69.4
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1631.7 1200 68.8
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1630.5 1202 68.6
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1630.2 1209 68.3
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1618.6 1181 70.3
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1614.4 1252 67.7
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1612.4 1199 67.9
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1612.0 1209 68.3
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1610.5 1203 68.7
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1610.1 1172 69.5
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1609.3 1202 67.9
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1609.3 1206 68.0
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1608.6 1201 69.0
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1600.1 1200 67.1
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1592.4 1201 67.9
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1591.2 1199 67.2
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1588.5 1205 65.9
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1585.9 1184 68.6
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1585.5 1200 67.6
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1582.8 1207 66.5
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1581.2 1200 67.2
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1581.2 1200 67.5
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1580.1 1200 67.2
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1579.3 1199 67.7
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1578.5 1208 66.8
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1576.6 1202 66.4
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1576.6 1200 67.2
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1571.6 1209 66.3
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1570.8 1200 67.0
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1567.0 1210 66.5
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1566.2 1209 65.3
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1558.9 1210 66.7
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1551.2 1208 65.1
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1550.4 1202 64.9
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1546.2 1205 65.6
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1545.4 1213 65.3
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1537.7 1206 64.9
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1536.2 1204 64.5
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1534.2 1196 65.4
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1526.5 1199 64.2
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1526.1 1205 64.1
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1521.1 1207 63.8
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1518.1 1202 64.6
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1513.0 1210 65.3
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1511.1 1207 63.5
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1511.1 1164 65.8
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1508.4 1207 63.4
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1506.9 1208 63.5
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1506.9 1208 64.7
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1505.7 1203 64.2
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1505.0 1209 65.4
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1504.6 1208 63.5
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1497.6 1204 64.0
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1497.6 1203 63.4
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1496.9 1200 64.6
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1493.4 1203 63.5
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1491.1 1199 63.1
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1489.2 1194 63.8
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1488.0 1200 64.0
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1486.1 1198 63.4
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1484.5 1198 62.5
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1479.2 1208 64.1
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1476.5 1194 63.7
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1468.8 1194 63.3
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1466.8 1199 63.0
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1464.1 1165 63.9
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1460.7 1181 63.2
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1458.7 1115 65.9
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1452.6 1193 61.7
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1443.7 1180 63.4
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1436.8 1193 61.5
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1421.8 1206 62.1
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1419.1 1200 61.3
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1400.6 980 72.7
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1388.2 1134 62.8
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1387.9 1293 58.8
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1371.7 1201 59.4
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1325.8 1025 65.7
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1320.1 1137 59.7
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1312.0 1177 57.9
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1311.6 1205 58.7
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1304.3 1200 56.6
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1297.3 1201 55.1
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1178.3 1051 59.5
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1107.8 891 63.2
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1102.0 806 69.2
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 4.0e-309 1065.1 962 58.8
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 1.3e-299 1033.5 834 64.5
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 5.6e-287 991.5 1150 49.5
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 3.3e-271 939.1 1223 43.3
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.4e-266 923.7 1239 42.7
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.6e-257 893.6 1250 43.0
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 3.5e-244 849.4 634 67.8
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 5.0e-243 845.5 1190 43.0
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 6.1e-233 812.0 1172 42.1
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 4.0e-232 809.3 1159 41.8
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.1e-229 801.2 1159 41.6
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.8e-224 783.9 1176 39.1
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 3.1e-216 756.5 797 51.7
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 5.4e-205 719.2 1038 42.2
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 1.8e-200 704.1 1223 36.0
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 2.0e-199 700.7 588 63.6
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.7e-187 661.0 569 59.8
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.6e-186 656.0 637 54.2
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 9.0e-176 622.1 538 58.9
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 2.0e-159 567.8 418 68.4
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 1.6e-156 558.1 487 62.2
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 8.2e-145 519.2 486 55.6
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 6.6e-118 429.9 321 67.9
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.1e-104 386.0 297 67.0
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 1.7e-78 298.9 1416 23.7
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 2.0e-74 285.4 263 54.0
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 9.3e-72 276.6 210 66.7
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 3.3e-69 268.1 210 65.7
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 2.9e-65 255.0 188 70.7
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 3.7e-52 211.5 204 55.9
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 6.1e-47 194.1 436 31.7
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 3.9e-46 191.4 457 30.9
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.9e-40 172.6 109 77.1
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 1.3e-33 149.8 1194 20.8
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 3.6e-23 115.2 96 63.5
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 3.5e-18 98.6 75 68.0
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 3.2e-16 92.0 74 64.9
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 1.8e-14 86.3 61 72.1
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 3.4e-13 82.0 79 51.9
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 1.3e-12 80.1 208 26.9
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 2.8e-12 79.0 64 67.2
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.6e-10 73.2 71 49.3
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 4.5e-10 71.6 64 57.8
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 1.3e-09 70.1 64 56.2
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 2.9e-09 68.9 80 47.5
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 6.5e-09 67.8 71 46.5
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.5e-08 66.6 71 49.3
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 6.1e-07 61.2 50 66.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 6.1e-07 61.2 50 66.0
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 1.4e-06 60.1 62 54.8


User provided reference genes

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