Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 1.6e-264 915.6 488 100.0
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 9.3e-172 607.4 494 70.9
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 1.6e-163 580.1 488 61.5
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 1.1e-159 567.4 490 63.3
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 1.8e-159 566.6 490 65.5
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.2e-155 553.9 442 63.6
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 5.5e-148 528.5 431 63.1
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.5e-140 503.8 361 67.3
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 4.8e-136 488.8 486 54.3
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 8.5e-133 478.0 491 52.1
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 3.2e-132 476.1 449 53.5
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 2.1e-131 473.4 494 50.4
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 8.0e-131 471.5 448 53.8
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.0e-130 471.1 356 66.6
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.0e-130 471.1 356 66.6
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 8.8e-130 468.0 487 51.7
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 4.4e-129 465.7 354 65.5
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 1.8e-127 460.3 430 56.3
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 5.4e-127 458.8 491 49.9
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 5.9e-126 455.3 441 53.7
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 7.7e-126 454.9 438 54.1
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 1.7e-125 453.8 408 62.5
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 2.9e-125 453.0 499 50.3
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 2.9e-125 453.0 455 51.9
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 3.8e-125 452.6 458 51.5
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 5.0e-125 452.2 490 51.0
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 6.6e-125 451.8 409 55.0
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 2.5e-124 449.9 437 54.9
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 3.3e-124 449.5 491 49.1
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 1.6e-123 447.2 499 47.5
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 1.6e-123 447.2 485 51.8
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 2.1e-123 446.8 442 51.1
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 1.8e-122 443.7 425 54.4
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 2.3e-122 443.4 449 51.7
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 2.3e-122 443.4 487 50.1
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 3.0e-122 443.0 442 53.2
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 1.2e-121 441.0 459 52.5
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 2.0e-121 440.3 489 50.5
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 2.6e-121 439.9 346 65.3
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 3.4e-121 439.5 432 53.2
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.3e-120 437.6 409 53.3
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 1.3e-120 437.6 503 53.9
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 1.7e-120 437.2 492 49.6
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 3.7e-120 436.0 425 53.6
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 4.9e-120 435.6 501 47.7
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 8.3e-120 434.9 438 53.0
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 9.2e-119 431.4 442 52.5
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.2e-118 431.0 448 49.6
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 3.5e-118 429.5 452 52.9
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 3.0e-117 426.4 487 49.7
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 5.0e-117 425.6 494 48.2
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 1.1e-116 424.5 487 47.8
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.5e-116 424.1 425 52.0
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.5e-116 424.1 428 51.6
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 1.5e-116 424.1 441 51.0
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 1.9e-116 423.7 487 47.8
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 1.9e-116 423.7 487 47.8
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 1.9e-116 423.7 455 53.0
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 4.3e-116 422.5 487 48.7
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 5.6e-116 422.2 431 52.0
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 5.6e-116 422.2 431 52.0
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 7.3e-116 421.8 433 51.7
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 1.2e-115 421.0 484 48.6
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.1e-115 420.2 394 53.0
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 3.6e-115 419.5 431 49.7
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 8.0e-115 418.3 332 64.2
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.1e-114 416.4 395 53.2
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 3.1e-114 416.4 434 50.9
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 5.2e-114 415.6 363 55.6
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 8.9e-114 414.8 382 53.1
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 2.6e-113 413.3 441 49.4
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 1.7e-112 410.6 441 49.2
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 2.2e-112 410.2 440 46.8
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 3.7e-112 409.5 406 56.2
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 4.9e-112 409.1 418 52.6
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 6.4e-112 408.7 391 52.7
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 1.1e-111 407.9 431 49.2
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 1.9e-111 407.1 406 51.0
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 2.4e-111 406.8 428 49.3
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 7.0e-111 405.2 351 58.4
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 3.5e-110 402.9 422 51.4
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 6.0e-110 402.1 443 49.4
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.1e-108 397.9 432 50.0
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 1.6e-107 394.0 427 49.6
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 2.1e-107 393.7 392 50.3
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 2.8e-107 393.3 434 48.2
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 6.2e-107 392.1 399 48.6
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 8.9e-106 388.3 448 46.7
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 1.0e-101 374.8 316 66.1
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 4.9e-96 355.9 462 43.9
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 6.4e-96 355.5 427 42.9
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 3.2e-95 353.2 337 54.6
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 2.5e-92 343.6 345 53.0
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 2.8e-91 340.1 359 48.7
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 3.8e-88 329.7 344 49.7
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 9.6e-84 315.1 266 54.5
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 1.3e-69 268.1 182 69.2
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 3.1e-58 230.3 323 41.8
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 1.5e-57 228.0 463 31.5
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 7.6e-57 225.7 491 35.4
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 5.0e-56 223.0 391 36.8
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 8.7e-53 212.2 368 36.4
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 2.0e-49 201.1 175 59.4
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 8.5e-48 195.7 178 64.0
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 8.5e-48 195.7 300 39.0
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 4.6e-46 189.9 173 58.4
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 1.1e-39 168.7 199 48.7
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 7.0e-34 149.4 382 29.3
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 1.7e-32 144.8 207 39.6
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 4.7e-22 110.2 97 61.9
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.3e-11 75.5 65 52.3
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 1.3e-08 65.5 85 54.1
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.3e-07 60.8 85 40.0
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 7.3e-07 59.7 85 38.8
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 7.3e-07 59.7 62 45.2


User provided reference genes

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