Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 1.8e-176 622.5 309 100.0
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 7.0e-149 530.8 309 82.8
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 7.0e-149 530.8 309 82.2
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 2.3e-147 525.8 309 81.9
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 8.3e-142 507.3 309 79.3
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 7.8e-140 500.7 305 77.4
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 5.1e-139 498.0 305 77.0
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 7.3e-138 494.2 304 77.0
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 6.8e-136 487.6 303 74.3
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 6.8e-136 487.6 302 75.8
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 3.7e-134 481.9 299 75.3
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 4.9e-134 481.5 299 75.3
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 8.3e-134 480.7 304 74.0
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 3.2e-133 478.8 309 73.1
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 4.1e-133 478.4 294 75.9
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 1.6e-132 476.5 308 73.7
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.6e-132 476.5 306 74.5
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 2.1e-132 476.1 307 73.0
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.7e-132 475.7 300 74.3
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 3.5e-132 475.3 305 74.8
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 7.8e-132 474.2 306 72.5
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.7e-131 473.0 305 72.8
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 2.3e-131 472.6 304 74.0
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 2.3e-131 472.6 297 74.4
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 6.6e-131 471.1 305 74.1
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 1.1e-130 470.3 306 72.9
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 4.3e-130 468.4 304 72.7
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 4.3e-130 468.4 304 72.4
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 7.3e-130 467.6 304 72.4
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 1.6e-129 466.5 305 70.8
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 2.1e-129 466.1 304 72.0
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 3.6e-129 465.3 296 74.0
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 4.7e-129 464.9 305 71.8
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 6.2e-129 464.5 301 71.4
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 6.2e-129 464.5 305 71.8
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 1.1e-128 463.8 304 73.0
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 1.4e-128 463.4 305 72.1
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 1.4e-128 463.4 301 72.4
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 1.4e-128 463.4 304 72.4
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 4.0e-128 461.8 306 70.6
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 5.2e-128 461.5 304 72.4
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 8.9e-128 460.7 304 70.7
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 1.5e-127 459.9 301 71.4
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.5e-127 459.9 300 73.0
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 2.6e-127 459.1 301 72.1
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 4.4e-127 458.4 301 71.1
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 5.8e-127 458.0 298 70.8
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 7.6e-127 457.6 302 70.9
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 7.6e-127 457.6 301 71.1
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 7.6e-127 457.6 301 71.8
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 9.9e-127 457.2 302 71.2
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 1.3e-126 456.8 301 71.1
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 1.3e-126 456.8 296 72.0
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 1.7e-126 456.4 295 72.9
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 2.2e-126 456.1 304 69.7
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 4.9e-126 454.9 306 70.6
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 6.4e-126 454.5 301 71.8
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 1.1e-125 453.8 304 69.1
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 1.1e-125 453.8 305 70.5
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 1.9e-125 453.0 305 70.5
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 4.2e-125 451.8 304 71.1
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 5.4e-125 451.4 301 69.1
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 9.3e-125 450.7 301 70.8
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.1e-124 449.5 301 70.8
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 3.5e-124 448.7 302 70.5
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 4.6e-124 448.4 303 68.6
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 2.3e-123 446.0 301 69.1
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 3.0e-123 445.7 301 70.4
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 5.1e-123 444.9 304 69.7
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 1.5e-122 443.4 295 71.5
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 1.9e-122 443.0 374 61.0
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 7.3e-122 441.0 305 69.5
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 2.8e-121 439.1 306 67.6
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 2.8e-121 439.1 376 59.8
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 3.6e-121 438.7 304 67.1
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 1.8e-120 436.4 306 67.3
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 4.0e-120 435.3 311 67.2
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 4.0e-120 435.3 306 67.6
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 4.0e-120 435.3 306 67.6
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 5.3e-120 434.9 306 67.3
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 2.6e-119 432.6 304 69.4
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 4.4e-119 431.8 306 66.7
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 5.8e-119 431.4 307 66.4
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 7.6e-119 431.0 306 67.0
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 9.9e-119 430.6 306 66.7
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 9.9e-119 430.6 306 66.3
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 9.9e-119 430.6 302 68.9
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 9.9e-119 430.6 304 69.1
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 1.7e-118 429.9 310 65.8
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 2.2e-118 429.5 306 66.0
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 2.2e-118 429.5 306 66.0
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 2.9e-118 429.1 306 66.7
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 1.9e-117 426.4 306 66.3
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 1.9e-117 426.4 341 62.8
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.9e-117 426.4 304 66.4
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 5.1e-115 418.3 306 63.7
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 6.6e-115 417.9 314 66.2
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.9e-114 416.4 314 64.0
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 4.8e-113 411.8 328 61.3
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 4.8e-113 411.8 304 62.2
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 6.2e-113 411.4 267 74.5
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 3.1e-112 409.1 304 64.1
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 2.4e-109 399.4 304 64.5
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 1.3e-107 393.7 304 61.8
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 5.1e-107 391.7 271 68.6
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 1.3e-105 387.1 302 63.9
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 2.8e-105 386.0 255 69.8
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 1.2e-103 380.6 255 69.4
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 1.8e-96 356.7 305 54.4
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 4.5e-95 352.1 303 60.4
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 3.9e-91 339.0 234 67.9
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 4.5e-87 325.5 261 64.0
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 1.4e-85 320.5 299 51.5
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 2.7e-84 316.2 198 76.3
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 3.6e-84 315.8 291 53.6
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 1.3e-81 307.4 213 67.1
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 2.5e-77 293.1 210 63.8
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 3.2e-77 292.7 174 78.7
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 2.3e-75 286.6 174 77.0
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 3.0e-67 259.6 176 72.7
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 9.1e-64 248.1 236 49.2
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 7.2e-61 238.4 178 67.4
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 1.7e-57 227.3 143 74.8
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 6.1e-52 208.8 187 52.9
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 1.3e-49 201.1 170 56.5
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 4.5e-47 192.6 130 68.5
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 7.3e-45 185.3 129 68.2
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 4.4e-42 176.0 130 64.6
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 9.8e-42 174.9 140 61.4
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.2e-39 167.9 104 77.9
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 4.6e-39 166.0 104 74.0
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 6.6e-38 162.2 105 71.4
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.4e-32 143.7 131 55.7
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 9.2e-32 141.7 131 56.5
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 4.6e-31 139.4 107 61.7
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 8.3e-25 118.6 76 69.7
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 9.9e-18 95.1 53 75.5


User provided reference genes

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