Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 6.7e-96 354.0 176 100.0
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 7.2e-82 307.4 175 81.1
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 2.7e-81 305.4 173 84.4
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.8e-78 295.4 172 82.0
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 3.1e-77 292.0 173 78.6
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 4.1e-77 291.6 173 78.0
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 7.0e-77 290.8 173 78.6
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 7.0e-77 290.8 173 78.6
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 7.0e-77 290.8 173 78.6
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.0e-76 289.3 173 78.6
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.7e-76 288.9 174 77.0
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 5.9e-76 287.7 173 78.0
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 7.7e-76 287.3 173 79.8
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 7.7e-76 287.3 173 76.9
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.3e-75 286.6 174 76.4
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 2.9e-75 285.4 173 76.3
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 2.9e-75 285.4 173 76.3
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 3.8e-75 285.0 173 78.6
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.8e-75 285.0 173 76.3
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 5.0e-75 284.6 173 77.5
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 5.0e-75 284.6 173 76.9
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.0e-75 284.6 173 76.9
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 6.5e-75 284.3 173 75.7
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 8.5e-75 283.9 173 77.5
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.5e-74 282.3 173 77.5
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.5e-74 282.3 173 77.5
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.5e-74 282.3 173 76.3
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 5.5e-74 281.2 173 74.6
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 9.4e-74 280.4 173 76.3
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.2e-73 280.0 175 74.3
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.6e-73 279.6 173 74.0
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.6e-73 279.6 173 76.3
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.1e-73 279.3 173 75.1
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 2.1e-73 279.3 173 75.1
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.7e-73 278.9 173 75.1
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 4.7e-73 278.1 173 75.7
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 6.1e-73 277.7 173 74.6
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 6.1e-73 277.7 171 74.3
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 1.0e-72 276.9 172 75.6
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.0e-72 276.9 173 74.0
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.4e-72 276.6 173 74.6
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.8e-72 276.2 175 73.1
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.8e-72 276.2 167 79.6
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 2.3e-72 275.8 173 73.4
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 2.3e-72 275.8 174 75.3
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.3e-72 275.8 173 73.4
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 3.0e-72 275.4 172 73.3
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 3.0e-72 275.4 172 72.7
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.0e-72 275.0 173 72.8
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 4.0e-72 275.0 173 73.4
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 4.0e-72 275.0 173 74.6
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 4.0e-72 275.0 173 75.1
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 4.0e-72 275.0 172 73.3
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 5.2e-72 274.6 176 73.3
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 6.8e-72 274.2 174 74.1
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 8.8e-72 273.9 172 72.1
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.2e-71 273.5 172 72.1
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.0e-71 272.7 172 72.1
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 2.0e-71 272.7 173 72.8
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 2.6e-71 272.3 172 72.1
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.6e-71 272.3 173 75.1
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 2.6e-71 272.3 164 78.7
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.6e-71 272.3 165 75.2
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 4.4e-71 271.6 172 70.9
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 4.4e-71 271.6 172 70.9
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 5.7e-71 271.2 172 70.9
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 5.7e-71 271.2 172 70.9
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 5.7e-71 271.2 173 72.8
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 7.5e-71 270.8 173 72.3
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.3e-70 270.0 175 72.6
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.7e-70 269.6 173 72.3
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 2.2e-70 269.2 171 74.3
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 8.3e-70 267.3 173 71.1
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.8e-69 266.2 173 71.1
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 4.1e-69 265.0 172 73.3
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.4e-69 264.6 162 78.4
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 3.5e-68 261.9 158 78.5
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 5.9e-68 261.2 173 69.4
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.3e-67 260.0 169 69.8
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.7e-67 259.6 170 70.6
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 2.9e-67 258.8 167 71.3
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 2.9e-67 258.8 170 70.0
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 3.8e-67 258.5 172 73.3
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 6.5e-67 257.7 170 69.4
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 8.6e-67 257.3 170 68.8
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 8.6e-67 257.3 172 70.9
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 1.1e-66 256.9 167 71.9
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 1.2e-65 253.4 164 72.6
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 2.8e-65 252.3 167 71.3
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 4.7e-65 251.5 172 68.6
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 4.7e-65 251.5 169 68.6
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 6.1e-65 251.1 170 70.0
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 6.1e-65 251.1 172 68.0
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 8.0e-65 250.8 170 70.6
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.0e-64 250.4 171 67.3
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.4e-64 250.0 164 72.6
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 3.0e-64 248.8 163 71.2
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.0e-64 248.8 163 72.4
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 3.0e-64 248.8 171 66.1
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 6.8e-64 247.7 172 66.3
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.2e-63 246.9 134 84.3
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 2.0e-63 246.1 173 69.4
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 3.4e-63 245.4 168 70.8
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 3.4e-63 245.4 168 70.8
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 4.4e-63 245.0 163 72.4
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 9.8e-63 243.8 170 70.0
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 9.8e-63 243.8 170 68.2
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.3e-62 243.4 164 70.7
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.3e-62 243.4 170 65.9
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.7e-62 243.0 164 69.5
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 1.7e-62 243.0 167 68.3
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 2.2e-62 242.7 166 68.7
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 4.9e-62 241.5 173 67.1
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 4.9e-62 241.5 168 66.7
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 1.4e-61 240.0 171 67.8
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.8e-61 239.6 171 63.2
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 5.4e-61 238.0 175 69.1
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 7.0e-61 237.7 170 68.2
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.0e-60 236.1 160 69.4
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.0e-60 236.1 176 65.3
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 7.8e-60 234.2 171 63.2
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.0e-59 233.8 171 63.2
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.0e-59 233.8 173 67.1
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 3.8e-59 231.9 168 64.3
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 6.6e-59 231.1 161 67.7
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 6.6e-59 231.1 171 62.0
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 6.6e-59 231.1 168 63.1
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 1.5e-58 229.9 164 64.0
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 4.3e-58 228.4 171 62.0
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.6e-58 228.0 139 76.3
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 5.6e-58 228.0 171 61.4
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 6.1e-57 224.6 172 61.6
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 4.4e-55 218.4 134 72.4
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.8e-55 217.2 168 63.1
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.2e-54 216.1 171 65.5
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.1e-53 213.8 168 62.5
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-53 213.8 168 62.5
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.2e-53 212.2 168 61.9
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 5.9e-52 208.0 160 57.5
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 2.3e-51 206.1 161 56.5
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.0e-51 205.7 143 70.6
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.6e-51 204.5 176 56.8
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-50 203.4 182 57.7
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 3.3e-50 202.2 160 58.8
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 7.3e-50 201.1 164 61.0
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.2e-49 200.3 162 62.3
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 1.6e-49 199.9 157 58.6
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 3.6e-49 198.7 159 61.0
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.6e-49 198.7 138 71.0
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.7e-49 198.4 155 58.7
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.4e-48 196.8 135 73.3
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.6e-47 192.6 172 53.5
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 2.4e-45 186.0 164 56.1
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 2.4e-45 186.0 162 60.5
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 4.6e-44 181.8 169 54.4
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.0e-43 180.6 142 57.7
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.3e-43 179.5 129 69.0
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.0e-43 179.1 164 53.7
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.1e-42 177.2 130 66.2
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.6e-41 173.3 129 65.1
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.1e-41 172.9 169 51.5
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.7e-41 171.8 169 51.5
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 6.0e-36 154.8 116 66.4
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 4.0e-32 142.1 94 66.0
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 6.8e-32 141.4 105 69.5
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 8.9e-32 141.0 90 71.1
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 1.5e-31 140.2 91 67.0
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 9.9e-31 137.5 88 72.7
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.2e-29 132.5 156 40.4
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 1.8e-24 116.7 170 40.6
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 5.8e-23 111.7 73 68.5
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.1e-17 93.2 79 57.0
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 9.9e-15 84.3 53 77.4
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 4.9e-14 82.0 122 42.6
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 8.4e-14 81.3 52 69.2
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 3.9e-11 72.4 173 30.1
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 2.1e-09 66.6 180 30.0
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 2.1e-09 66.6 63 52.4
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 2.8e-09 66.2 36 75.0
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 8.1e-09 64.7 180 27.2
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-08 64.3 36 75.0
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 7.6e-07 58.2 36 66.7


User provided reference genes

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