Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 1.3e-46 189.5 104 100.0
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 4.3e-34 147.9 102 78.4
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 7.6e-31 137.1 102 70.6
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.1e-29 133.3 102 68.6
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 2.5e-29 132.1 99 67.7
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 1.6e-28 129.4 100 65.0
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 2.1e-28 129.0 100 66.0
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 2.7e-28 128.6 99 66.7
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 3.5e-28 128.3 99 64.6
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 6.0e-28 127.5 98 67.3
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 6.0e-28 127.5 100 62.0
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 1.0e-27 126.7 98 67.3
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 1.0e-27 126.7 99 67.7
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 1.8e-27 125.9 102 64.7
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 3.0e-27 125.2 102 63.7
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 3.0e-27 125.2 98 66.3
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 3.0e-27 125.2 98 66.3
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 3.9e-27 124.8 100 64.0
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 3.9e-27 124.8 102 62.7
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 3.9e-27 124.8 99 62.6
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 5.1e-27 124.4 98 64.3
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 6.7e-27 124.0 99 64.6
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 6.7e-27 124.0 99 61.6
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 8.7e-27 123.6 99 60.6
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 8.7e-27 123.6 98 64.3
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 8.7e-27 123.6 97 68.0
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.1e-26 123.2 100 61.0
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 1.1e-26 123.2 104 61.5
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 1.1e-26 123.2 102 62.7
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 1.1e-26 123.2 100 63.0
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.5e-26 122.9 100 60.0
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 1.5e-26 122.9 98 64.3
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 2.5e-26 122.1 101 62.4
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 2.5e-26 122.1 98 64.3
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 3.3e-26 121.7 100 61.0
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 3.3e-26 121.7 99 61.6
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 3.3e-26 121.7 99 61.6
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 5.7e-26 120.9 101 59.4
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 7.4e-26 120.6 100 60.0
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 7.4e-26 120.6 99 61.6
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 7.4e-26 120.6 99 61.6
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 1.3e-25 119.8 100 59.0
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 1.3e-25 119.8 104 60.6
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 2.8e-25 118.6 101 62.4
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 2.8e-25 118.6 100 61.0
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 3.7e-25 118.2 97 63.9
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 3.7e-25 118.2 101 59.4
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 4.8e-25 117.9 101 57.4
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 4.8e-25 117.9 101 57.4
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 6.2e-25 117.5 100 66.0
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 8.2e-25 117.1 99 58.6
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 1.1e-24 116.7 98 61.2
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 1.4e-24 116.3 97 60.8
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 1.4e-24 116.3 99 59.6
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 1.8e-24 115.9 98 61.2
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 1.8e-24 115.9 100 60.0
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 2.4e-24 115.5 101 56.4
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 3.1e-24 115.2 101 56.4
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 4.1e-24 114.8 101 57.4
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 4.1e-24 114.8 99 59.6
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 5.3e-24 114.4 100 64.0
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 5.3e-24 114.4 101 55.4
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 5.3e-24 114.4 101 55.4
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 6.9e-24 114.0 101 56.4
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 6.9e-24 114.0 100 59.0
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 6.9e-24 114.0 99 59.6
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 6.9e-24 114.0 98 59.2
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 9.0e-24 113.6 99 56.6
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 9.0e-24 113.6 99 56.6
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 9.0e-24 113.6 99 56.6
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 2.6e-23 112.1 100 55.0
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 4.5e-23 111.3 93 62.4
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 4.5e-23 111.3 98 62.2
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 1.3e-22 109.8 100 55.0
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 1.7e-22 109.4 102 55.9
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 1.7e-22 109.4 88 62.5
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 3.8e-22 108.2 98 57.1
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 3.8e-22 108.2 104 52.9
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 6.5e-22 107.5 101 54.5
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 6.5e-22 107.5 101 54.5
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 8.4e-22 107.1 101 55.4
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 8.4e-22 107.1 105 52.4
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 1.1e-21 106.7 102 57.8
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 2.5e-21 105.5 101 54.5
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 2.5e-21 105.5 99 54.5
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 5.5e-21 104.4 98 57.1
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 9.3e-21 103.6 82 63.4
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 1.6e-20 102.8 101 54.5
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 2.1e-20 102.4 94 56.4
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 1.9e-18 95.9 157 38.9
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 5.7e-18 94.4 97 52.6
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 7.4e-18 94.0 99 51.5
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 3.7e-17 91.7 117 49.6
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 6.3e-17 90.9 96 55.2
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 4.1e-16 88.2 85 51.8
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 2.6e-15 85.5 102 52.0
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 2.6e-15 85.5 103 51.5
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 6.5e-14 80.9 94 46.8
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 1.4e-13 79.7 100 50.0
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 1.2e-12 76.6 103 42.7
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 2.1e-12 75.9 104 46.2
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 8.8e-11 70.5 97 43.3
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 7.4e-10 67.4 115 33.9
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 1.3e-09 66.6 87 42.5
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 8.2e-09 63.9 51 66.7
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 9.1e-08 60.5 46 65.2
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 1.2e-07 60.1 53 54.7
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 1.5e-07 59.7 53 54.7
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 4.5e-07 58.2 61 45.9
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 1.3e-06 56.6 61 42.6
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 1.3e-06 56.6 61 42.6
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 1.3e-06 56.6 53 47.2
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 2.2e-06 55.8 44 63.6


User provided reference genes

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