Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 2.1e-163 578.9 286 100.0
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 1.3e-133 479.9 325 72.6
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 1.3e-133 479.9 325 72.6
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 3.8e-133 478.4 285 80.0
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 8.0e-131 470.7 284 79.6
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 2.9e-125 452.2 285 77.2
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.5e-124 449.1 283 76.3
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 5.6e-124 448.0 283 77.0
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 8.9e-122 440.7 285 75.1
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 1.2e-121 440.3 285 74.0
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.2e-121 440.3 285 75.1
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 2.6e-121 439.1 283 76.0
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 3.4e-121 438.7 285 73.3
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 5.7e-121 438.0 284 75.7
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 2.9e-120 435.6 286 73.8
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 6.4e-120 434.5 284 73.9
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.8e-119 433.0 283 73.1
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 4.1e-119 431.8 285 73.0
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 4.1e-119 431.8 285 73.0
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 4.1e-119 431.8 284 76.1
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 7.0e-119 431.0 289 74.0
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 9.2e-119 430.6 288 73.3
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 9.2e-119 430.6 288 72.6
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 9.2e-119 430.6 284 75.7
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.0e-118 429.5 285 72.3
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.0e-117 427.2 284 72.5
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.0e-117 427.2 288 71.9
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 1.0e-117 427.2 288 71.9
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 1.0e-117 427.2 287 71.8
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 1.0e-117 427.2 284 71.8
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.3e-117 426.8 285 73.3
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.7e-117 426.4 293 70.3
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.0e-117 425.6 278 73.4
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 8.6e-117 424.1 285 71.6
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 1.1e-116 423.7 284 73.2
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 1.5e-116 423.3 286 70.6
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 3.3e-116 422.2 283 72.4
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 7.3e-116 421.0 288 70.1
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 7.3e-116 421.0 286 72.7
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 7.3e-116 421.0 286 71.3
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 7.3e-116 421.0 283 72.8
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 9.5e-116 420.6 285 70.9
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 9.5e-116 420.6 323 65.0
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 9.5e-116 420.6 283 72.1
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 1.2e-115 420.2 284 71.5
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 2.1e-115 419.5 287 71.4
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.8e-115 419.1 286 71.7
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.8e-115 419.1 286 71.7
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 4.7e-115 418.3 287 73.2
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 1.0e-114 417.2 285 70.5
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 1.4e-114 416.8 286 69.9
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 6.8e-114 414.5 286 69.2
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.5e-113 413.3 284 70.8
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 1.5e-113 413.3 284 72.2
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 3.4e-113 412.1 286 69.2
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 3.4e-113 412.1 284 70.8
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 3.4e-113 412.1 323 66.6
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 4.4e-113 411.8 284 70.4
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 7.5e-113 411.0 286 68.5
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 7.5e-113 411.0 284 71.8
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 1.3e-112 410.2 294 70.1
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 1.3e-112 410.2 286 68.9
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.7e-112 409.8 283 72.1
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 2.9e-112 409.1 284 71.1
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.7e-112 408.7 285 70.5
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 1.1e-111 407.1 284 70.1
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.9e-111 406.4 287 70.7
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 2.4e-111 406.0 283 70.3
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 3.2e-111 405.6 287 71.8
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.6e-110 403.3 286 69.2
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 2.7e-110 402.5 275 71.3
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 2.7e-110 402.5 284 67.6
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 1.0e-109 400.6 286 69.9
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 3.9e-109 398.7 286 68.5
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 8.6e-109 397.5 286 69.6
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 8.6e-109 397.5 286 69.2
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 1.1e-108 397.1 286 69.6
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.1e-108 397.1 254 76.8
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 1.5e-108 396.7 274 71.2
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 1.9e-108 396.4 285 69.1
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 1.9e-108 396.4 287 66.9
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 1.9e-108 396.4 287 67.9
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 4.3e-108 395.2 294 67.3
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 9.5e-108 394.0 286 68.9
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 1.2e-107 393.7 287 68.3
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 4.7e-107 391.7 238 78.6
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 6.2e-107 391.3 286 68.5
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 6.2e-107 391.3 287 68.3
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 1.4e-106 390.2 287 67.2
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 2.3e-106 389.4 286 67.8
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 4.0e-106 388.7 286 66.8
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 6.8e-106 387.9 287 67.2
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 1.2e-105 387.1 303 66.0
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 2.6e-105 386.0 253 74.3
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 4.4e-105 385.2 283 69.3
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 1.3e-104 383.6 283 68.6
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.3e-104 383.6 254 74.8
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 4.9e-104 381.7 253 75.1
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 4.9e-104 381.7 283 68.9
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 1.9e-103 379.8 289 65.4
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 2.7e-102 375.9 284 65.1
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 2.3e-101 372.9 286 65.4
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.3e-101 372.9 283 65.7
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 6.6e-101 371.3 254 72.8
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 8.6e-101 370.9 254 71.3
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 1.5e-100 370.2 287 65.2
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.3e-96 357.1 225 74.7
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 2.4e-95 352.8 284 63.0
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 4.3e-92 342.0 278 60.8
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 3.8e-88 328.9 241 66.0
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.2e-86 323.9 208 76.0
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 2.1e-86 323.2 283 59.4
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 1.0e-85 320.9 286 57.0
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.0e-85 319.3 285 57.5
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 1.1e-84 317.4 276 60.9
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 2.1e-83 313.2 249 62.2
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 4.8e-83 312.0 281 55.5
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 2.9e-80 302.8 237 62.4
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 8.4e-80 301.2 279 55.6
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 5.1e-69 265.4 228 64.0
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 4.3e-68 262.3 168 72.0
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 1.0e-64 251.1 186 67.7
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 6.7e-53 211.8 297 45.1
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 9.0e-50 201.4 262 42.7
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 9.4e-47 191.4 130 70.8
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 8.2e-43 178.3 273 37.0
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 1.7e-40 170.6 149 60.4
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 1.6e-38 164.1 152 57.9
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 6.1e-38 162.2 149 58.4
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.6e-36 156.8 147 58.5
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 1.4e-34 151.0 137 59.1
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 1.5e-31 141.0 122 58.2
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.7e-30 136.7 266 32.3
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 1.8e-29 134.0 366 29.0
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 2.2e-27 127.1 93 69.9
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 6.5e-24 115.5 71 76.1
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 1.5e-23 114.4 82 65.9
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 1.2e-22 111.3 168 38.7
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.0e-21 108.2 99 54.5
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 1.0e-21 108.2 89 65.2
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 7.7e-17 92.0 72 61.1
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 1.0e-16 91.7 59 62.7
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 2.9e-16 90.1 90 55.6
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.1e-14 84.0 60 71.7
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 8.0e-14 82.0 180 31.1
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.0e-13 81.6 61 57.4
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 1.8e-13 80.9 109 45.0
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.8e-13 80.9 59 57.6
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.0e-13 80.1 59 59.3
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.0e-13 80.1 59 59.3
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 6.8e-13 79.0 213 31.9
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 9.8e-12 75.1 88 48.9
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 9.8e-12 75.1 88 47.7
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 2.8e-11 73.6 83 49.4
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 2.8e-11 73.6 83 49.4
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 6.3e-11 72.4 56 66.1
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 3.1e-10 70.1 43 67.4
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 4.5e-09 66.2 122 41.0
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.6e-06 56.6 43 69.8
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 8.0e-06 55.5 40 65.0


User provided reference genes

Program Settings