Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 1.0e-224 783.1 399 100.0
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 1.4e-165 586.6 397 73.6
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 4.6e-161 571.6 394 71.8
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 3.5e-148 528.9 379 70.4
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 1.7e-147 526.6 395 68.6
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 3.6e-145 518.8 415 65.8
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 2.4e-141 506.1 394 66.2
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 4.5e-140 501.9 389 64.8
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 6.5e-139 498.0 394 64.5
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 4.2e-138 495.4 385 66.5
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 6.1e-137 491.5 394 63.2
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 8.0e-137 491.1 386 65.0
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 8.0e-137 491.1 394 64.5
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 8.0e-137 491.1 392 65.1
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.4e-136 490.3 393 64.1
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 1.2e-135 487.3 408 63.0
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 1.7e-134 483.4 394 64.2
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 8.3e-134 481.1 388 64.7
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 1.1e-133 480.7 390 63.1
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 1.4e-133 480.3 384 63.5
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 3.1e-133 479.2 384 63.3
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 1.6e-132 476.9 391 63.2
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 4.5e-132 475.3 384 62.8
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 5.9e-132 474.9 398 63.1
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 7.7e-132 474.6 400 61.5
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 3.8e-131 472.2 387 62.5
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 3.8e-131 472.2 394 61.9
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 2.1e-129 466.5 390 62.3
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 6.1e-129 464.9 390 62.1
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 6.1e-129 464.9 390 62.3
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 4.0e-128 462.2 391 62.9
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 1.5e-127 460.3 385 62.3
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 2.0e-127 459.9 396 60.1
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 2.6e-127 459.5 389 60.4
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 1.3e-126 457.2 395 59.0
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 3.7e-126 455.7 388 60.3
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 1.4e-125 453.8 388 60.8
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 2.4e-125 453.0 394 59.1
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 5.4e-125 451.8 395 59.5
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 3.8e-123 445.7 382 60.5
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 6.6e-123 444.9 386 58.5
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 1.9e-122 443.4 390 60.5
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 3.3e-122 442.6 395 59.0
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 4.2e-122 442.2 374 61.0
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 1.4e-120 437.2 388 58.2
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 1.8e-120 436.8 384 61.7
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 1.8e-120 436.8 384 59.9
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 3.0e-120 436.0 419 56.8
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 4.0e-120 435.6 389 57.3
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 4.0e-120 435.6 389 57.6
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 6.8e-120 434.9 388 58.8
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.2e-119 434.1 389 57.3
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 9.8e-119 431.0 388 58.0
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 4.9e-118 428.7 385 58.2
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 4.1e-117 425.6 386 58.3
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 7.8e-116 421.4 394 57.4
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.5e-114 417.2 392 57.7
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 4.3e-114 415.6 357 59.7
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 1.2e-113 414.1 425 54.4
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 1.8e-112 410.2 367 57.2
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 1.8e-112 410.2 413 55.2
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.8e-112 410.2 388 58.8
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 3.1e-112 409.5 386 57.3
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 4.0e-112 409.1 420 54.8
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 2.0e-111 406.8 323 63.8
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 7.5e-111 404.8 389 54.8
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 1.3e-110 404.1 385 56.4
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 1.6e-108 397.1 386 56.7
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 1.5e-106 390.6 381 52.5
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.5e-106 390.6 376 56.4
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 2.8e-105 386.3 384 52.6
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 3.4e-103 379.4 406 53.0
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 9.8e-103 377.9 384 52.9
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 4.1e-101 372.5 383 55.9
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.2e-100 370.9 314 61.8
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 1.2e-100 370.9 379 53.0
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 1.6e-100 370.5 384 50.5
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 3.5e-100 369.4 287 64.5
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 1.7e-99 367.1 382 50.8
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 3.0e-99 366.3 382 51.3
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 3.9e-99 365.9 382 51.6
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 3.9e-99 365.9 389 50.6
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 3.3e-98 362.8 382 50.8
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 8.1e-97 358.2 376 50.8
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 8.1e-97 358.2 389 49.9
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 1.8e-96 357.1 389 49.4
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 5.2e-96 355.5 392 49.7
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 1.2e-95 354.4 389 49.9
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 3.4e-95 352.8 389 49.9
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 7.6e-95 351.7 396 49.0
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 3.7e-94 349.4 389 49.6
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 4.9e-94 349.0 295 62.0
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 1.7e-91 340.5 379 51.5
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 1.2e-89 334.3 379 48.3
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.1e-88 331.3 336 52.7
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.5e-87 327.4 337 52.5
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 5.8e-87 325.5 411 46.0
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 8.1e-81 305.1 388 47.7
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 4.0e-80 302.8 311 54.7
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 3.8e-78 296.2 353 49.9
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 2.4e-77 293.5 331 48.9
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 4.6e-76 289.3 319 47.3
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 5.6e-74 282.3 298 51.3
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 2.6e-71 273.5 366 44.8
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 8.7e-67 258.5 355 45.6
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 4.8e-65 252.7 379 41.4
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 1.0e-54 218.4 399 36.1
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 7.4e-50 202.2 248 46.0
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 4.5e-47 193.0 331 37.5
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 1.3e-41 174.9 189 50.3
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 1.3e-41 174.9 397 34.8
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 3.9e-35 153.3 193 45.1
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 4.4e-34 149.8 111 64.0
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.3e-33 148.3 151 49.7
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 5.3e-32 142.9 168 47.0
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 5.3e-32 142.9 168 47.0
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 4.5e-31 139.8 175 48.6
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 3.8e-30 136.7 354 30.8
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.5e-29 134.0 162 47.5
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 5.2e-27 126.3 370 28.6
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 7.5e-26 122.5 205 39.0
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.4e-24 118.2 73 78.1
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.8e-24 117.9 151 41.1
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 5.0e-22 109.8 123 48.0
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 2.5e-21 107.5 72 72.2
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 9.4e-21 105.5 71 73.2
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 4.0e-19 100.1 114 44.7
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 3.4e-18 97.1 73 68.5
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.8e-17 94.0 68 67.6
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.6e-15 88.2 110 45.5
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 8.0e-12 75.9 64 60.9
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 8.0e-12 75.9 64 60.9
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 5.9e-07 59.7 42 71.4
Lsat_1_v5_gn_3_139021 Lactuca sativa HOM05D000115 ORTHO05D000645 3.8e-06 57.0 34 73.5
QL04p035577 Quercus lobata HOM05D005911 ORTHO05D007565 8.6e-06 55.8 60 46.7


User provided reference genes

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