Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20092 Avicennia marina HOM05D005274 ORTHO05D006485 7.7e-141 503.8 258 100.0
SGA_v2.0_scaffold32G13165 Striga asiatica HOM05D005274 ORTHO05D006485 1.5e-104 383.3 245 80.4
Cc00_g24660 Coffea canephora HOM05D005274 ORTHO05D006485 4.3e-99 365.2 259 70.3
Migut.B00249 Erythranthe guttata HOM05D005274 ORTHO05D006485 7.3e-99 364.4 258 73.3
Oeu020806.2 Olea europaea HOM05D005274 ORTHO05D006485 1.1e-94 350.5 254 72.4
Dinv33272 Davidia involucrata HOM05D005274 ORTHO05D006485 1.6e-93 346.7 241 72.6
Cc06_g13990 Coffea canephora HOM05D005274 ORTHO05D006485 7.8e-93 344.4 238 71.8
Oeu034171.3 Olea europaea HOM05D005274 ORTHO05D006485 3.9e-92 342.0 237 74.3
Peaxi162Scf00102g01534 Petunia axillaris HOM05D005274 ORTHO05D006485 3.6e-90 335.5 259 68.0
SalBow6G5022 Salvia bowleyana HOM05D005274 ORTHO05D006485 1.4e-89 333.6 239 73.2
SalBow6G6215 Salvia bowleyana HOM05D005274 ORTHO05D006485 3.1e-89 332.4 239 72.8
CSS0033174 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 2.4e-86 322.8 240 67.1
CAN.G792.79 Capsicum annuum HOM05D005274 ORTHO05D006485 4.1e-86 322.0 256 67.6
PGSC0003DMG400005779 Solanum tuberosum HOM05D005274 ORTHO05D006485 2.7e-85 319.3 263 66.2
Lsat_1_v5_gn_2_86720 Lactuca sativa HOM05D005274 ORTHO05D006485 3.5e-85 318.9 258 64.0
unitig_744.g24245 Utricularia gibba HOM05D005274 ORTHO05D006485 6.0e-85 318.2 251 65.7
vmacro18391 Vaccinium macrocarpon HOM05D005274 ORTHO05D006485 2.3e-84 316.2 259 63.3
Nitab4.5_0004836g0020 Nicotiana tabacum HOM05D005274 ORTHO05D006485 4.3e-83 312.0 232 69.0
TAR381G1230 Trochodendron aralioides HOM05D005274 ORTHO05D006485 9.6e-83 310.8 260 63.8
Nitab4.5_0006090g0030 Nicotiana tabacum HOM05D005274 ORTHO05D006485 2.1e-82 309.7 235 68.9
GSVIVG01032972001 Vitis vinifera HOM05D005274 ORTHO05D006485 2.1e-82 309.7 245 64.5
HanXRQChr07g0200241 Helianthus annuus HOM05D005274 ORTHO05D006485 1.4e-81 307.0 260 61.5
Solyc08g008040.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 1.5e-80 303.5 231 67.5
TAR624G0372 Trochodendron aralioides HOM05D005274 ORTHO05D006485 9.9e-80 300.8 245 64.1
Lj9A368G50 Lonicera japonica HOM05D005274 ORTHO05D006485 1.3e-79 300.4 232 67.2
Atru.chr6.2707 Acer truncatum HOM05D005274 ORTHO05D006485 2.9e-79 299.3 260 59.6
QL02p069234 Quercus lobata HOM05D005274 ORTHO05D006485 2.9e-79 299.3 243 62.1
Cpa.g.sc70.54 Carica papaya HOM05D005274 ORTHO05D006485 3.8e-79 298.9 241 62.7
Potri.004G197200 Populus trichocarpa HOM05D005274 ORTHO05D006485 8.4e-79 297.7 260 58.8
Sopen08g003920 Solanum pennellii HOM05D005274 ORTHO05D006485 4.2e-78 295.4 229 66.4
VMungo1309G1271 Vigna mungo HOM05D005274 ORTHO05D006485 9.3e-78 294.3 260 59.6
ECA238G2078 Erigeron canadensis HOM05D005274 ORTHO05D006485 1.6e-77 293.5 245 60.8
Eucgr.I01592 Eucalyptus grandis HOM05D005274 ORTHO05D006485 2.7e-77 292.7 256 60.2
DCAR_022112 Daucus carota HOM05D005274 ORTHO05D006485 7.8e-77 291.2 238 61.8
Glyma.14G044800 Glycine max HOM05D005274 ORTHO05D006485 1.0e-76 290.8 247 57.9
CiPaw.04G000800 Carya illinoinensis HOM05D005274 ORTHO05D006485 2.3e-76 289.7 244 61.1
Glyma.02G271800 Glycine max HOM05D005274 ORTHO05D006485 3.0e-76 289.3 247 59.1
PGSC0003DMG400011003 Solanum tuberosum HOM05D005274 ORTHO05D006485 3.9e-76 288.9 239 64.4
CsaV3_5G024970 Cucumis sativus L. HOM05D005274 ORTHO05D006485 6.6e-76 288.1 246 60.2
Medtr2g097630 Medicago truncatula HOM05D005274 ORTHO05D006485 1.1e-75 287.3 247 59.1
Medtr5g071380 Medicago truncatula HOM05D005274 ORTHO05D006485 4.3e-75 285.4 247 58.7
Rhsim08G0038500 Rhododendron simsii HOM05D005274 ORTHO05D006485 4.3e-75 285.4 233 63.5
Manes.11G112500 Manihot esculenta HOM05D005274 ORTHO05D006485 3.6e-74 282.3 226 62.8
MELO3C005096.2 Cucumis melo HOM05D005274 ORTHO05D006485 8.1e-74 281.2 245 58.8
Gohir.D11G068400 Gossypium hirsutum HOM05D005274 ORTHO05D006485 8.1e-74 281.2 259 57.5
Lalb_Chr10g0096401 Lupinus albus HOM05D005274 ORTHO05D006485 8.1e-74 281.2 263 58.6
Sed0000255 Sechium edule HOM05D005274 ORTHO05D006485 8.1e-74 281.2 245 59.2
Gorai.007G073200 Gossypium raimondii HOM05D005274 ORTHO05D006485 1.4e-73 280.4 259 57.5
Cfa007146 Carpinus fangiana HOM05D005274 ORTHO05D006485 2.4e-73 279.6 260 57.3
Sabra04G0133600 Salix brachista HOM05D005274 ORTHO05D006485 2.4e-73 279.6 235 60.0
Duzib187G0989 Durio zibethinus HOM05D005274 ORTHO05D006485 4.0e-73 278.9 259 57.1
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 4.0e-73 278.9 247 56.7
Nn8g40353 Nelumbo nucifera HOM05D005274 ORTHO05D006485 1.2e-72 277.3 229 59.8
LjContig00564g0024425 Lotus japonicus HOM05D005274 ORTHO05D006485 2.6e-72 276.2 261 56.7
arahy.Tifrunner.gnm1.ann1.T7P6Q4 Arachis hypogaea HOM05D005274 ORTHO05D006485 3.4e-72 275.8 259 54.1
arahy.Tifrunner.gnm1.ann1.5GP605 Arachis hypogaea HOM05D005274 ORTHO05D006485 4.4e-72 275.4 259 54.1
Psat2g056880 Pisum sativum HOM05D005274 ORTHO05D006485 4.4e-72 275.4 243 57.6
FAN15G2064 Fragaria x ananassa HOM05D005274 ORTHO05D006485 7.6e-72 274.6 256 56.6
FAN27G1266 Fragaria x ananassa HOM05D005274 ORTHO05D006485 7.6e-72 274.6 255 57.3
FAN24G2993 Fragaria x ananassa HOM05D005274 ORTHO05D006485 9.9e-72 274.2 255 57.3
Hma1.2p1_0474F.1_g160740 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 9.9e-72 274.2 236 61.9
FvH4_2g10500 Fragaria vesca HOM05D005274 ORTHO05D006485 2.2e-71 273.1 255 56.9
Ciclev10016162m.g Citrus clementina HOM05D005274 ORTHO05D006485 3.8e-71 272.3 243 58.4
RcHm_v2.0_Chr6g0267991 Rosa chinensis HOM05D005274 ORTHO05D006485 3.8e-71 272.3 255 56.5
EL10Ac6g13414 Beta vulgaris HOM05D005274 ORTHO05D006485 6.4e-71 271.6 255 54.9
Ca_26258_v3 Cicer arietinum L. HOM05D005274 ORTHO05D006485 8.4e-71 271.2 260 53.5
PSO063G1622 Papaver somniferum HOM05D005274 ORTHO05D006485 1.9e-70 270.0 241 58.1
AUR62009346 Chenopodium quinoa HOM05D005274 ORTHO05D006485 3.2e-70 269.2 255 54.1
MD09G1264600 Malus domestica HOM05D005274 ORTHO05D006485 7.1e-70 268.1 244 57.4
AUR62017870 Chenopodium quinoa HOM05D005274 ORTHO05D006485 1.2e-69 267.3 257 54.5
Prupe.5G024800 Prunus persica HOM05D005274 ORTHO05D006485 1.6e-69 266.9 254 56.3
THA.LOC104802536 Tarenaya hassleriana HOM05D005274 ORTHO05D006485 4.6e-69 265.4 244 57.0
Phvul.005G158400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 1.0e-68 264.2 246 56.9
PSO017G0788 Papaver somniferum HOM05D005274 ORTHO05D006485 1.3e-68 263.8 252 54.0
ClCG01G008500 Citrullus lanatus HOM05D005274 ORTHO05D006485 6.6e-68 261.5 238 56.3
Aqoxy5G02491 Aquilegia oxysepala HOM05D005274 ORTHO05D006485 7.3e-67 258.1 256 56.6
Sc14g0002660 Simmondsia chinensis HOM05D005274 ORTHO05D006485 1.6e-66 256.9 232 57.8
Thecc.04G049000 Theobroma cacao HOM05D005274 ORTHO05D006485 4.0e-65 252.3 233 56.7
CANSAT54G1155 Cannabis sativa HOM05D005274 ORTHO05D006485 2.0e-64 250.0 240 52.5
Gohir.A11G064100 Gossypium hirsutum HOM05D005274 ORTHO05D006485 4.5e-64 248.8 230 55.7
PGR142G3427 Punica granatum HOM05D005274 ORTHO05D006485 9.9e-64 247.7 256 51.6
ATR1136G175 Amborella trichopoda HOM05D005274 ORTHO05D006485 3.8e-63 245.7 242 53.3
TWI32G1102 Tripterygium wilfordii HOM05D005274 ORTHO05D006485 9.3e-62 241.1 296 43.9
Aa31LG10G6820 Aethionema arabicum HOM05D005274 ORTHO05D006485 2.1e-61 240.0 273 47.6
Sp4g16830 Schrenkiella parvula HOM05D005274 ORTHO05D006485 2.7e-61 239.6 252 51.2
Sopen10g034190 Solanum pennellii HOM05D005274 ORTHO05D006485 3.5e-61 239.2 218 60.6
Carub.0004s1624 Capsella rubella HOM05D005274 ORTHO05D006485 4.6e-61 238.8 244 49.6
Thhalv10017887m.g Eutrema salsugineum HOM05D005274 ORTHO05D006485 6.0e-61 238.4 250 49.6
BcaC01g05789 Brassica carinata HOM05D005274 ORTHO05D006485 3.0e-60 236.1 250 50.8
BolC3t14622H Brassica oleracea HOM05D005274 ORTHO05D006485 3.0e-60 236.1 250 50.8
Ah.10g032810 Amaranthus hybridus HOM05D005274 ORTHO05D006485 5.1e-60 235.3 258 51.2
CARHR128660 Cardamine hirsuta HOM05D005274 ORTHO05D006485 6.7e-60 235.0 242 49.6
MD08G1181300 Malus domestica HOM05D005274 ORTHO05D006485 6.7e-60 235.0 238 52.9
AT2G34570 Arabidopsis thaliana HOM05D005274 ORTHO05D006485 1.1e-59 234.2 239 50.2
Hund29750 Selenicereus undatus HOM05D005274 ORTHO05D006485 1.1e-59 234.2 182 62.1
Hund29752 Selenicereus undatus HOM05D005274 ORTHO05D006485 1.1e-59 234.2 182 62.1
BcaB01g06368 Brassica carinata HOM05D005274 ORTHO05D006485 1.5e-59 233.8 250 49.2
A03p19190 Brassica napus HOM05D005274 ORTHO05D006485 1.5e-59 233.8 250 50.4
BraA03t11174Z Brassica rapa HOM05D005274 ORTHO05D006485 1.5e-59 233.8 250 50.4
AL4G30540 Arabidopsis lyrata HOM05D005274 ORTHO05D006485 3.3e-59 232.6 240 50.0
C03p22390 Brassica napus HOM05D005274 ORTHO05D006485 4.3e-59 232.3 250 50.0
MD16G1246600 Malus domestica HOM05D005274 ORTHO05D006485 2.1e-58 229.9 196 57.7
Potri.009G159400 Populus trichocarpa HOM05D005274 ORTHO05D006485 1.0e-55 221.1 170 60.0
SHI33526 Sapria himalayana HOM05D005274 ORTHO05D006485 2.2e-55 219.9 234 50.9
SHI31386 Sapria himalayana HOM05D005274 ORTHO05D006485 6.5e-55 218.4 236 49.2
Cc00_g27920 Coffea canephora HOM05D005274 ORTHO05D006485 2.7e-53 213.0 159 66.0
AUR62037816 Chenopodium quinoa HOM05D005274 ORTHO05D006485 3.3e-51 206.1 234 47.4
Os02g0468200 Oryza sativa ssp. japonica HOM05D005274 ORTHO05D006485 1.6e-50 203.8 233 47.2
AagrBONN_evm.TU.Sc2ySwM_228.2974 Anthoceros agrestis HOM05D005274 ORTHO05D006485 8.2e-50 201.4 254 43.3
Zm00001eb319780 Zea mays HOM05D005274 ORTHO05D006485 1.4e-49 200.7 231 48.1
Mapoly0006s0036 Marchantia polymorpha HOM05D005274 ORTHO05D006485 1.2e-48 197.6 244 44.7
SMO347G0017 Selaginella moellendorffii HOM05D005274 ORTHO05D006485 5.9e-48 195.3 243 45.3
COL.COLO4_13388 Corchorus olitorius HOM05D005274 ORTHO05D006485 7.6e-48 194.9 233 48.5
HPP92_002470 Vanilla planifolia HOM05D005274 ORTHO05D006485 2.2e-47 193.4 133 63.2
Pp3c2_27880 Physcomitrium patens HOM05D005274 ORTHO05D006485 8.4e-47 191.4 249 43.0
BolC4t23029H Brassica oleracea HOM05D005274 ORTHO05D006485 1.1e-46 191.0 250 44.0
Solyc10g084740.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 1.6e-42 177.2 279 43.0
Actinidia19548 Actinidia chinensis HOM05D005274 ORTHO05D006485 2.8e-42 176.4 108 77.8
BcaC02g11519 Brassica carinata HOM05D005274 ORTHO05D006485 8.2e-42 174.9 182 48.9
Nitab4.5_0000568g0280 Nicotiana tabacum HOM05D005274 ORTHO05D006485 1.2e-37 161.0 247 42.9
SEGI_17090 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 4.6e-37 159.1 132 54.5
CBR_g8346 Chara braunii HOM05D005274 ORTHO05D006485 6.1e-37 158.7 199 41.7
C04p14460 Brassica napus HOM05D005274 ORTHO05D006485 1.7e-34 150.6 250 38.4
Cc00_g29040 Coffea canephora HOM05D005274 ORTHO05D006485 3.1e-33 146.4 85 81.2
Phvul.005G025400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 5.1e-28 129.0 236 40.3
Nn8g41301 Nelumbo nucifera HOM05D005274 ORTHO05D006485 4.7e-21 105.9 115 51.3
Cre11.g480800 Chlamydomonas reinhardtii HOM05D005274 ORTHO05D006485 1.0e-20 104.8 304 28.9
MCO15G315 Micromonas commoda HOM05D005274 ORTHO05D006485 5.2e-20 102.4 243 29.6
Sabra10G0082800 Salix brachista HOM05D005274 ORTHO05D006485 2.0e-19 100.5 107 43.9
Sabra02G0148900 Salix brachista HOM05D005274 ORTHO05D006485 1.3e-18 97.8 107 43.0
CSS0005176 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 1.4e-17 94.4 103 55.3
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 1.0e-15 88.2 65 63.1
PGR142G3154 Punica granatum HOM05D005274 ORTHO05D006485 2.5e-14 83.6 116 38.8
CDE04G1865 Ceratophyllum demersum HOM05D000386 ORTHO05D000406 5.5e-14 82.4 65 55.4
PRCOL_00002591 Prasinoderma coloniale HOM05D005274 ORTHO05D006485 1.0e-12 78.2 246 29.7
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 3.1e-09 66.6 42 66.7
Sabra07G0113400 Salix brachista HOM05D005274 ORTHO05D006485 7.7e-08 62.0 127 31.5
Sabra16G0085100 Salix brachista HOM05D005274 ORTHO05D007424 7.7e-08 62.0 45 60.0
SEGI_09940 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 1.0e-07 61.6 102 35.3
Sabra16G0093500 Salix brachista HOM05D005274 ORTHO05D007424 2.2e-07 60.5 78 42.3
Pp3c7_15560 Physcomitrium patens HOM05D004276 ORTHO05D005126 6.5e-07 58.9 127 31.5
arahy.Tifrunner.gnm1.ann1.4FI6MM Arachis hypogaea HOM05D004276 ORTHO05D005126 8.5e-07 58.5 152 29.6
arahy.Tifrunner.gnm1.ann1.K2BJ17 Arachis hypogaea HOM05D004276 ORTHO05D005126 8.5e-07 58.5 152 29.6
arahy.Tifrunner.gnm1.ann1.BP50A3 Arachis hypogaea HOM05D004276 ORTHO05D005126 1.1e-06 58.2 152 29.6
arahy.Tifrunner.gnm1.ann1.X3APAR Arachis hypogaea HOM05D004276 ORTHO05D005126 1.1e-06 58.2 152 29.6
QL04p058903 Quercus lobata HOM05D004276 ORTHO05D005126 1.5e-06 57.8 127 29.9
Ciclev10022345m.g Citrus clementina HOM05D004276 ORTHO05D005126 1.9e-06 57.4 152 28.9
Pp3c11_12810 Physcomitrium patens HOM05D004276 ORTHO05D005126 1.9e-06 57.4 127 30.7
Os06g0158600 Oryza sativa ssp. japonica HOM05D004276 ORTHO05D005126 2.5e-06 57.0 137 28.5
Sed0018576 Sechium edule HOM05D004276 ORTHO05D005126 2.5e-06 57.0 127 29.9
Zm00001eb376300 Zea mays HOM05D004276 ORTHO05D005126 2.5e-06 57.0 137 28.5
CiPaw.01G069700 Carya illinoinensis HOM05D004276 ORTHO05D005126 3.2e-06 56.6 127 30.7
Zm00001eb376330 Zea mays HOM05D004276 ORTHO05D005126 3.2e-06 56.6 154 28.6
Lj9C594T5 Lonicera japonica HOM05D004276 ORTHO05D005126 4.2e-06 56.2 154 28.6
AL1G39200 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 5.5e-06 55.8 137 29.2
Cfa003820 Carpinus fangiana HOM05D004276 ORTHO05D005126 5.5e-06 55.8 127 29.9
HPP92_002892 Vanilla planifolia HOM05D004276 ORTHO05D005126 5.5e-06 55.8 127 29.9
Aa31LG1G27620 Aethionema arabicum HOM05D004276 ORTHO05D005126 9.4e-06 55.1 137 28.5
DCAR_017055 Daucus carota HOM05D004276 ORTHO05D005126 9.4e-06 55.1 127 29.1
Hma1.2p1_0474F.1_g160730 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 9.4e-06 55.1 83 47.0


User provided reference genes

Program Settings