Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 1.5e-178 629.4 322 100.0
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 2.0e-130 469.5 278 86.7
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 1.1e-125 453.8 315 73.7
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 2.5e-125 452.6 303 76.2
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 9.6e-125 450.7 312 75.0
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.3e-124 450.3 279 80.3
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 3.7e-124 448.7 321 73.8
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 2.4e-123 446.0 314 73.9
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 6.9e-123 444.5 305 75.1
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 6.9e-123 444.5 286 79.7
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 1.5e-122 443.4 327 73.7
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 4.5e-122 441.8 277 80.1
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 7.6e-122 441.0 309 74.1
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 1.3e-121 440.3 281 79.4
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 1.3e-121 440.3 317 70.3
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 5.0e-121 438.3 284 77.1
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 1.1e-120 437.2 284 76.8
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 1.1e-120 437.2 283 77.0
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.9e-120 436.4 305 73.8
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 1.9e-120 436.4 287 76.7
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 2.5e-120 436.0 290 76.6
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 7.2e-120 434.5 288 76.7
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 7.2e-120 434.5 287 76.3
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 9.3e-120 434.1 288 75.7
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 1.2e-119 433.7 278 77.3
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 1.6e-119 433.3 290 75.5
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 2.1e-119 433.0 291 73.9
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 4.6e-119 431.8 285 74.7
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.3e-118 430.3 305 73.1
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.3e-118 430.3 308 71.4
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 1.3e-118 430.3 290 75.5
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 1.3e-118 430.3 287 76.0
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 1.3e-118 430.3 289 75.4
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 1.8e-118 429.9 328 69.2
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 2.3e-118 429.5 321 70.1
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 5.1e-118 428.3 287 76.0
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 5.1e-118 428.3 305 73.8
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 5.7e-117 424.9 306 70.9
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 9.7e-117 424.1 299 72.2
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 1.3e-116 423.7 285 74.4
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 1.3e-116 423.7 304 71.1
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 2.8e-116 422.5 305 73.1
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 1.8e-115 419.9 297 73.7
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 2.4e-115 419.5 290 72.4
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 6.9e-115 417.9 287 72.8
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 1.0e-113 414.1 280 74.6
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 1.0e-113 414.1 295 69.8
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 3.8e-113 412.1 282 73.0
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 5.0e-113 411.8 304 71.4
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 8.5e-113 411.0 319 68.7
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 2.5e-112 409.5 279 73.8
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 5.5e-112 408.3 278 72.3
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 7.2e-112 407.9 277 74.4
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 7.2e-112 407.9 326 66.0
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 1.2e-111 407.1 288 69.1
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 1.2e-111 407.1 304 70.4
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 2.1e-111 406.4 287 72.8
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 7.9e-111 404.4 280 72.1
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 1.4e-110 403.7 288 70.1
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 3.0e-110 402.5 344 62.2
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 3.0e-110 402.5 259 76.8
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 6.7e-110 401.4 288 69.1
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 4.3e-109 398.7 288 68.1
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 5.7e-109 398.3 330 65.2
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 3.7e-108 395.6 277 69.3
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.4e-107 393.7 282 69.1
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 1.8e-107 393.3 287 69.0
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 3.1e-107 392.5 276 74.3
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 9.1e-107 391.0 309 68.3
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 4.2e-104 382.1 291 67.0
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 5.5e-104 381.7 290 66.9
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 2.7e-103 379.4 281 69.0
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 4.7e-103 378.6 280 68.9
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 7.9e-103 377.9 276 71.4
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 2.6e-98 362.8 252 73.0
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 2.6e-98 362.8 280 70.0
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 3.5e-98 362.5 287 68.3
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 2.9e-97 359.4 324 61.7
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.5e-96 357.1 251 69.7
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 1.0e-94 350.9 299 64.2
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 3.3e-93 345.9 305 63.6
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 7.5e-93 344.7 305 63.6
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 5.9e-90 335.1 322 57.8
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 6.1e-87 325.1 282 63.5
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 1.8e-86 323.6 303 62.0
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 5.2e-86 322.0 234 72.2
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 6.3e-84 315.1 198 78.8
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 8.3e-84 314.7 291 58.1
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.1e-83 314.3 291 57.7
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 2.4e-83 313.2 197 79.7
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 4.1e-83 312.4 317 54.9
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 1.2e-82 310.8 304 58.6
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 2.3e-78 296.6 201 76.6
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 1.2e-77 294.3 296 51.7
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 3.4e-77 292.7 264 56.8
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 6.6e-73 278.5 270 54.4
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 4.7e-71 272.3 277 53.1
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.0e-70 271.2 272 53.7
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.0e-65 254.6 272 51.8
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 2.3e-65 253.4 260 55.4
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 5.6e-64 248.8 180 71.1
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 2.0e-61 240.4 348 45.1
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 4.9e-60 235.7 207 62.3
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 1.0e-57 228.0 197 58.4
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 4.4e-53 212.6 156 67.9
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.1e-43 181.4 114 80.7
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 1.2e-42 177.9 132 68.2
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 1.9e-40 170.6 144 63.9
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 2.0e-37 160.6 186 51.6
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 1.2e-34 151.4 186 48.9
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 3.9e-33 146.4 242 36.0
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 4.3e-32 142.9 188 46.3
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 6.9e-30 135.6 225 42.2
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.5e-29 134.4 104 66.3
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 4.5e-29 132.9 212 42.0
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 5.8e-29 132.5 214 42.5
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 1.2e-26 124.8 275 31.3
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 1.3e-25 121.3 212 41.0
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 1.8e-25 120.9 79 79.7
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 2.3e-25 120.6 71 77.5
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 8.7e-25 118.6 97 60.8
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 1.9e-24 117.5 101 63.4
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 2.8e-23 113.6 137 51.1
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 4.9e-20 102.8 244 27.9
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 8.4e-20 102.1 68 72.1
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 5.5e-19 99.4 69 69.6
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 2.1e-18 97.4 90 52.2
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 2.8e-15 87.0 128 40.6
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 4.8e-15 86.3 151 39.1
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 1.2e-13 81.6 61 68.9
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 4.9e-12 76.3 78 55.1
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 1.1e-11 75.1 61 63.9
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 4.6e-10 69.7 69 56.5
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 7.9e-10 68.9 57 64.9
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 8.7e-09 65.5 46 65.2
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 9.6e-08 62.0 106 42.5
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 1.6e-07 61.2 142 29.6
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 5.3e-06 56.2 48 52.1


User provided reference genes

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