Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 2.0e-64 248.8 117 100.0
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 7.0e-57 223.8 117 88.9
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 1.9e-54 215.7 114 86.8
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 7.2e-54 213.8 117 83.8
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.4e-52 209.5 117 81.2
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.2e-51 206.5 111 84.7
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 3.3e-51 204.9 113 81.4
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.3e-51 204.9 115 81.7
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 4.4e-51 204.5 115 82.6
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.7e-51 204.1 115 81.7
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 7.5e-51 203.8 110 84.5
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 7.5e-51 203.8 114 81.6
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 7.5e-51 203.8 114 80.7
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 7.5e-51 203.8 114 80.7
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 9.7e-51 203.4 115 80.9
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.7e-51 203.4 115 80.9
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.7e-51 203.4 115 80.9
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 9.7e-51 203.4 115 80.9
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 9.7e-51 203.4 113 82.3
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 9.7e-51 203.4 117 80.3
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.3e-50 203.0 115 80.9
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 1.3e-50 203.0 116 79.3
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 2.2e-50 202.2 115 80.9
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 6.3e-50 200.7 114 78.9
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 8.2e-50 200.3 111 81.1
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 1.1e-49 199.9 109 81.7
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 1.4e-49 199.5 115 80.0
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 1.8e-49 199.1 117 77.8
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 3.1e-49 198.4 113 79.6
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 4.1e-49 198.0 112 78.6
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 4.1e-49 198.0 115 80.0
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 4.1e-49 198.0 111 81.1
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 5.3e-49 197.6 112 78.6
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.3e-49 197.6 112 78.6
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 5.3e-49 197.6 115 79.1
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 9.1e-49 196.8 115 78.3
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 9.1e-49 196.8 115 80.9
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 9.1e-49 196.8 117 78.6
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 9.1e-49 196.8 116 76.7
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.2e-48 196.4 115 77.4
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 1.2e-48 196.4 115 79.1
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 1.2e-48 196.4 117 77.8
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.2e-48 196.4 117 77.8
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 1.2e-48 196.4 117 76.9
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 1.6e-48 196.1 114 77.2
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 1.6e-48 196.1 112 78.6
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.6e-48 196.1 114 75.4
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 2.0e-48 195.7 114 78.1
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 2.0e-48 195.7 112 77.7
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 2.7e-48 195.3 112 77.7
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 2.7e-48 195.3 112 77.7
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 2.7e-48 195.3 112 77.7
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 2.7e-48 195.3 112 77.7
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 2.7e-48 195.3 112 77.7
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 2.7e-48 195.3 114 77.2
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 3.5e-48 194.9 112 76.8
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 3.5e-48 194.9 116 75.9
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 3.5e-48 194.9 116 75.9
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 3.5e-48 194.9 107 83.2
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.5e-48 194.9 112 77.7
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 3.5e-48 194.9 116 77.6
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 4.5e-48 194.5 116 75.0
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 4.5e-48 194.5 112 77.7
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 5.9e-48 194.1 114 76.3
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 7.7e-48 193.7 116 75.9
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 7.7e-48 193.7 112 76.8
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 7.7e-48 193.7 112 76.8
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 7.7e-48 193.7 114 75.4
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 76.1
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 1.0e-47 193.4 112 76.8
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 1.0e-47 193.4 112 76.8
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 1.7e-47 192.6 113 74.3
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 1.7e-47 192.6 113 78.8
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 2.9e-47 191.8 112 75.9
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 2.9e-47 191.8 112 75.9
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.9e-47 191.8 112 76.8
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 2.9e-47 191.8 112 75.9
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.9e-47 191.8 112 77.7
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 3.8e-47 191.4 115 77.4
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 5.0e-47 191.0 112 76.8
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 6.5e-47 190.7 112 75.0
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 6.5e-47 190.7 112 75.0
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 6.5e-47 190.7 112 75.0
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 6.5e-47 190.7 114 75.4
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 6.5e-47 190.7 114 75.4
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 6.5e-47 190.7 114 75.4
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 8.5e-47 190.3 112 75.9
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 8.5e-47 190.3 112 75.9
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 8.5e-47 190.3 113 77.0
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 8.5e-47 190.3 129 71.3
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 1.1e-46 189.9 113 77.0
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.9e-46 189.1 117 76.9
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 2.5e-46 188.7 105 81.0
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.2e-46 188.3 112 75.0
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 4.2e-46 188.0 112 75.0
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 4.2e-46 188.0 111 78.4
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 4.2e-46 188.0 117 72.6
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 5.5e-46 187.6 111 77.5
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 9.4e-46 186.8 104 82.7
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 9.4e-46 186.8 112 75.9
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 1.2e-45 186.4 114 74.6
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 1.6e-45 186.0 101 84.2
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 2.7e-45 185.3 110 74.5
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 4.7e-45 184.5 117 75.2
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 6.1e-45 184.1 114 72.8
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 8.0e-45 183.7 103 79.6
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 2.3e-44 182.2 114 75.4
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 2.3e-44 182.2 106 77.4
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.0e-44 181.8 100 83.0
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 7.5e-43 177.2 109 74.3
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 9.8e-43 176.8 114 71.9
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 2.2e-42 175.6 147 58.5
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 6.3e-42 174.1 112 70.5
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 1.4e-41 172.9 134 62.7
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 3.1e-41 171.8 101 74.3
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 5.4e-41 171.0 98 80.6
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.6e-40 169.5 102 75.5
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 1.5e-38 162.9 102 70.6
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 4.2e-38 161.4 178 48.9
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.2e-37 159.8 111 71.2
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 1.4e-33 146.4 113 59.3
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 4.1e-33 144.8 81 81.5
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 2.0e-32 142.5 91 75.8
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 3.5e-32 141.7 118 61.9
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 2.9e-31 138.7 112 52.7
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 1.1e-30 136.7 111 55.0
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 2.1e-29 132.5 112 57.1
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 2.3e-28 129.0 103 54.4
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 4.1e-25 118.2 102 57.8
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-23 113.6 111 48.6
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 3.9e-23 111.7 60 76.7
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 5.0e-23 111.3 149 44.3
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 5.0e-23 111.3 113 49.6
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.9e-22 109.4 82 65.9
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 1.9e-22 109.4 57 78.9
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.2e-21 106.7 60 78.3
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 4.7e-21 104.8 103 45.6
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 6.2e-21 104.4 102 47.1
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 8.0e-21 104.0 58 75.9
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 8.9e-20 100.5 57 86.0
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 2.6e-19 99.0 55 85.5
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 4.4e-19 98.2 96 47.9
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 1.1e-17 93.6 79 58.2
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 2.5e-14 82.4 54 75.9
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 6.2e-13 77.8 55 61.8
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 9.9e-11 70.5 46 63.0
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 3.7e-10 68.6 97 36.1
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 7.3e-06 54.3 83 43.4


User provided reference genes

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