Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 2.9e-168 595.1 297 100.0
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 1.3e-88 330.5 299 64.2
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 5.3e-45 185.7 237 52.7
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 1.3e-43 181.0 303 45.9
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 2.6e-39 166.8 295 41.0
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 4.4e-39 166.0 324 39.5
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 1.7e-38 164.1 281 43.4
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 7.7e-36 155.2 351 39.3
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 7.7e-36 155.2 204 47.5
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.1e-34 151.4 308 39.6
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.9e-34 150.6 357 37.3
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 2.5e-34 150.2 324 39.5
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 2.1e-33 147.1 161 57.8
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 2.7e-33 146.7 304 38.2
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 6.1e-33 145.6 254 41.7
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 6.1e-33 145.6 268 40.7
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 8.0e-33 145.2 201 46.8
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.8e-32 144.1 315 36.2
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.8e-32 144.1 257 41.6
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 3.0e-32 143.3 226 42.0
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 4.0e-32 142.9 190 46.3
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 1.2e-31 141.4 330 39.1
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.2e-31 141.4 366 35.8
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.2e-31 141.4 310 38.7
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 1.2e-31 141.4 320 35.9
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 1.5e-31 141.0 255 40.8
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 1.5e-31 141.0 220 42.7
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 2.0e-31 140.6 245 41.6
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.6e-31 140.2 213 48.4
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 7.5e-31 138.7 232 41.4
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 7.5e-31 138.7 232 42.7
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.3e-30 137.9 364 35.7
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 1.3e-30 137.9 384 34.9
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 1.3e-30 137.9 246 40.2
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 1.7e-30 137.5 211 42.2
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.7e-30 137.5 346 36.7
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 1.7e-30 137.5 333 37.2
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 3.7e-30 136.3 220 42.7
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 3.7e-30 136.3 316 36.1
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 8.3e-30 135.2 230 40.4
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 8.3e-30 135.2 344 35.8
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.8e-29 134.0 331 33.8
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 1.6e-28 131.0 331 34.1
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.6e-28 131.0 200 42.5
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 2.0e-28 130.6 249 39.8
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.0e-28 130.6 186 44.6
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.5e-28 129.8 314 36.9
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 3.5e-28 129.8 220 40.5
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 3.5e-28 129.8 362 34.0
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 4.5e-28 129.4 383 34.5
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 5.9e-28 129.0 139 53.2
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 5.9e-28 129.0 349 35.8
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 7.7e-28 128.6 340 36.5
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.3e-27 127.9 180 46.1
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 1.7e-27 127.5 234 39.7
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 1.7e-27 127.5 280 38.2
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 2.3e-27 127.1 364 32.7
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 2.9e-27 126.7 268 38.8
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 3.8e-27 126.3 389 33.9
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 6.6e-27 125.6 246 41.1
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 6.6e-27 125.6 193 44.0
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.1e-26 124.8 351 35.3
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 1.1e-26 124.8 355 34.9
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 1.5e-26 124.4 292 38.4
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 2.5e-26 123.6 342 33.3
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 2.5e-26 123.6 359 33.1
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 3.3e-26 123.2 368 34.8
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 4.2e-26 122.9 314 37.3
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 5.5e-26 122.5 164 48.8
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 1.2e-25 121.3 167 47.9
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 1.6e-25 120.9 219 39.7
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 2.1e-25 120.6 144 51.4
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 2.8e-25 120.2 213 39.9
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 3.6e-25 119.8 240 37.5
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 3.6e-25 119.8 222 37.8
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 4.7e-25 119.4 364 33.2
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 4.7e-25 119.4 346 32.1
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 4.7e-25 119.4 208 38.5
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 8.0e-25 118.6 265 37.0
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 8.0e-25 118.6 219 39.3
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 8.0e-25 118.6 184 44.6
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 1.8e-24 117.5 203 42.9
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 2.3e-24 117.1 308 35.7
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 3.0e-24 116.7 278 36.0
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 3.0e-24 116.7 322 33.5
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 4.0e-24 116.3 212 40.6
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 5.2e-24 115.9 363 30.6
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.2e-24 115.9 308 35.4
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 5.2e-24 115.9 300 34.7
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 6.8e-24 115.5 312 35.3
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.5e-23 114.4 334 34.4
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.5e-23 114.4 348 33.0
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 2.6e-23 113.6 374 34.0
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 3.4e-23 113.2 379 31.1
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 4.4e-23 112.8 331 33.2
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 7.5e-23 112.1 251 35.5
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.3e-22 111.3 128 50.8
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 6.3e-22 109.0 333 32.7
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 6.3e-22 109.0 107 55.1
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 8.3e-22 108.6 338 32.2
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 8.3e-22 108.6 324 33.3
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 1.4e-21 107.8 114 53.5
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 1.4e-21 107.8 124 51.6
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 2.4e-21 107.1 112 54.5
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 3.2e-21 106.7 210 39.0
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 4.1e-21 106.3 248 34.3
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 9.2e-21 105.1 352 33.0
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.2e-20 104.8 98 61.2
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.6e-20 104.4 109 52.3
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 1.6e-20 104.4 356 31.7
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.7e-20 103.6 353 30.3
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 4.5e-20 102.8 102 54.9
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 4.5e-20 102.8 107 52.3
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 4.5e-20 102.8 107 51.4
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 5.9e-20 102.4 198 35.9
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 7.8e-20 102.1 106 55.7
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 7.8e-20 102.1 110 51.8
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 1.3e-19 101.3 350 30.6
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 1.3e-19 101.3 107 51.4
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 1.3e-19 101.3 107 51.4
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 1.7e-19 100.9 97 56.7
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 1.7e-19 100.9 107 52.3
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.7e-19 100.9 352 32.4
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 2.3e-19 100.5 107 50.5
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 2.9e-19 100.1 354 30.2
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 3.9e-19 99.8 103 55.3
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 3.9e-19 99.8 263 32.7
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 5.0e-19 99.4 111 52.3
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.9e-18 97.4 167 43.1
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 5.6e-18 95.9 101 52.5
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 5.6e-18 95.9 101 52.5
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.1e-17 94.0 67 67.2
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 4.7e-17 92.8 303 32.3
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 4.7e-17 92.8 107 47.7
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 4.7e-17 92.8 107 47.7
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.0e-16 91.7 69 68.1
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 1.4e-16 91.3 68 67.6
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 2.3e-16 90.5 101 50.5
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 6.8e-16 89.0 43 86.0
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 8.9e-16 88.6 49 77.6
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 1.2e-15 88.2 165 38.2
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 2.0e-15 87.4 297 32.7
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 2.0e-15 87.4 367 28.3
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 3.4e-15 86.7 239 33.5
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 3.4e-15 86.7 123 41.5
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 4.4e-15 86.3 100 50.0
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 4.4e-15 86.3 81 54.3
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 7.5e-15 85.5 297 32.3
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 9.8e-15 85.1 101 47.5
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 1.3e-14 84.7 298 30.9
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 1.3e-14 84.7 298 30.9
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 1.3e-14 84.7 298 30.9
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 4.9e-14 82.8 101 46.5
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 8.3e-14 82.0 229 33.6
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 3.2e-13 80.1 81 50.6
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 9.2e-13 78.6 99 42.4
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.2e-12 78.2 296 30.4
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 1.3e-11 74.7 194 32.5
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 3.3e-10 70.1 131 38.2
Potri.016G059400 Populus trichocarpa HOM05D014635 ORTHO05D014310 5.6e-10 69.3 120 35.8
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 9.5e-10 68.6 37 75.7
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 9.5e-10 68.6 37 75.7
Sabra16G0062200 Salix brachista HOM05D014635 ORTHO05D014310 2.8e-09 67.0 123 39.0
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.8e-09 67.0 138 35.5
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 6.2e-09 65.9 37 73.0
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.1e-08 65.1 39 69.2
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 5.8e-07 59.3 37 62.2
Migut.J01845 Erythranthe guttata HOM05D003648 ORTHO05D004267 9.8e-07 58.5 100 48.0
Thecc.05G174100 Theobroma cacao HOM05D014635 ORTHO05D014310 2.2e-06 57.4 97 39.2
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 2.9e-06 57.0 37 59.5
Gohir.A01G190633 Gossypium hirsutum HOM05D014635 ORTHO05D014310 6.4e-06 55.8 171 25.7
QL07p024385 Quercus lobata HOM05D046221 ORTHO05D014310 6.4e-06 55.8 265 26.4
Manes.08G044100 Manihot esculenta HOM05D014635 ORTHO05D014310 8.3e-06 55.5 128 31.2


User provided reference genes

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