Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 2.4e-84 315.5 159 100.0
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 2.5e-73 278.9 159 83.6
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 3.0e-71 271.9 157 82.8
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 8.8e-71 270.4 156 84.6
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 1.2e-70 270.0 159 79.9
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 1.2e-70 270.0 157 83.4
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 2.6e-70 268.9 157 82.8
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 2.6e-70 268.9 159 81.1
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 1.3e-69 266.5 158 81.6
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 1.3e-69 266.5 158 81.6
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 1.7e-69 266.2 158 81.0
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 4.8e-69 264.6 159 81.1
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 4.8e-69 264.6 158 79.1
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.8e-69 264.6 159 80.5
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 1.4e-68 263.1 159 80.5
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.8e-68 262.7 155 81.3
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.4e-68 262.3 154 81.8
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.4e-68 262.3 154 81.8
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 3.1e-68 261.9 156 81.4
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.1e-68 261.9 159 78.0
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 4.1e-68 261.5 159 78.6
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 7.0e-68 260.8 154 81.8
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 7.0e-68 260.8 140 90.7
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 7.0e-68 260.8 156 80.8
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 7.0e-68 260.8 158 81.0
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 9.1e-68 260.4 156 81.4
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 1.2e-67 260.0 156 80.1
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.6e-67 259.6 156 80.1
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 1.6e-67 259.6 157 78.3
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 2.0e-67 259.2 158 82.9
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.0e-67 259.2 156 80.1
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 4.5e-67 258.1 159 78.0
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 7.7e-67 257.3 158 80.4
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.0e-66 256.9 158 81.6
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 1.3e-66 256.5 158 79.7
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 1.7e-66 256.1 159 78.0
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 1.7e-66 256.1 159 76.7
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 2.2e-66 255.8 158 79.1
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 2.9e-66 255.4 159 78.0
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 2.9e-66 255.4 157 79.0
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 5.0e-66 254.6 157 77.7
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 77.2
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 77.2
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 77.2
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 77.2
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 77.2
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.1e-65 253.4 158 77.2
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 1.9e-65 252.7 150 81.3
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.9e-65 252.7 150 81.3
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 2.5e-65 252.3 158 77.2
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 3.2e-65 251.9 158 77.8
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 5.5e-65 251.1 150 81.3
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 7.2e-65 250.8 159 73.0
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 7.2e-65 250.8 156 76.3
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 9.4e-65 250.4 159 77.4
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 1.2e-64 250.0 150 80.7
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 1.2e-64 250.0 155 76.8
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.6e-64 249.6 151 77.5
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 2.1e-64 249.2 159 77.4
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 2.1e-64 249.2 156 77.6
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 2.1e-64 249.2 155 78.7
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 2.7e-64 248.8 154 78.6
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 2.7e-64 248.8 156 77.6
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 3.6e-64 248.4 158 75.3
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 3.6e-64 248.4 154 77.3
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 4.7e-64 248.1 158 76.6
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 4.7e-64 248.1 154 77.3
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 6.1e-64 247.7 158 75.3
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.0e-63 246.9 154 77.3
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.4e-63 246.5 154 77.9
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.4e-63 246.5 154 77.9
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.8e-63 246.1 150 77.3
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 1.8e-63 246.1 154 77.9
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 3.0e-63 245.4 159 74.2
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 3.0e-63 245.4 159 75.5
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 8.8e-63 243.8 158 75.9
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 8.8e-63 243.8 154 77.3
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 1.2e-62 243.4 159 75.5
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 2.0e-62 242.7 154 76.6
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 2.6e-62 242.3 156 75.6
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 4.4e-62 241.5 154 76.0
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 5.7e-62 241.1 154 76.0
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 5.7e-62 241.1 154 75.3
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 5.7e-62 241.1 156 75.0
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 5.7e-62 241.1 156 75.0
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 5.7e-62 241.1 156 76.3
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 5.7e-62 241.1 154 75.3
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 7.5e-62 240.7 156 75.0
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 9.8e-62 240.4 154 76.0
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 1.7e-61 239.6 156 76.3
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 1.7e-61 239.6 154 75.3
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 2.2e-61 239.2 158 72.8
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 6.3e-61 237.7 206 61.7
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 1.4e-60 236.5 156 75.0
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 1.8e-60 236.1 155 74.8
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 1.8e-60 236.1 155 74.8
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 1.8e-60 236.1 155 74.8
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 1.8e-60 236.1 155 74.8
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.8e-60 236.1 155 74.8
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.8e-60 236.1 154 74.0
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 1.8e-60 236.1 159 72.3
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 2.4e-60 235.7 142 80.3
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 4.1e-60 235.0 150 76.0
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 5.4e-60 234.6 158 74.7
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 5.4e-60 234.6 158 74.7
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 2.0e-59 232.6 150 75.3
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 2.0e-59 232.6 158 70.9
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 2.7e-59 232.3 149 75.8
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 2.7e-59 232.3 149 75.8
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 2.7e-59 232.3 149 75.8
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 4.5e-59 231.5 150 74.7
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.0e-58 230.3 146 73.3
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 2.9e-58 228.8 156 68.6
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 2.8e-56 222.2 148 72.3
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 3.6e-56 221.9 208 56.2
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 1.5e-54 216.5 125 84.0
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 1.5e-54 216.5 249 50.2
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 2.9e-53 212.2 191 58.1
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 4.9e-53 211.5 143 72.7
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 1.2e-51 206.8 302 43.4
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 1.6e-51 206.5 135 74.8
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.7e-50 203.0 155 65.2
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 2.9e-50 202.2 123 80.5
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 6.2e-48 194.5 156 62.2
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.0e-46 189.5 142 68.3
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 5.8e-46 188.0 156 58.3
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 8.3e-45 184.1 109 81.7
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 4.1e-44 181.8 112 75.9
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.4e-36 156.8 99 79.8
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 1.6e-35 153.3 95 78.9
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 1.0e-34 150.6 111 67.6
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 1.3e-34 150.2 133 58.6
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 3.6e-32 142.1 154 46.1
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 7.6e-30 134.4 130 54.6
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 8.4e-29 131.0 146 55.5
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 8.4e-29 131.0 149 45.6
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 1.4e-28 130.2 150 43.3
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.9e-28 129.8 149 45.0
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 2.4e-28 129.4 77 79.2
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 7.3e-25 117.9 150 41.3
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 2.1e-24 116.3 85 67.1
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 1.8e-23 113.2 143 41.3
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.0e-22 109.8 95 62.1
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.0e-22 109.8 95 62.1
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 1.7e-21 106.7 65 76.9
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.2e-21 106.3 65 76.9
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 6.4e-21 104.8 138 42.8
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 3.2e-20 102.4 64 76.6
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 7.1e-20 101.3 101 58.4
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 4.6e-19 98.6 64 73.4
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 1.1e-15 87.4 78 59.0
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 9.6e-09 64.3 68 54.4
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 2.8e-08 62.8 68 52.9
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 1.8e-07 60.1 61 52.5
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 5.3e-07 58.5 45 66.7
ATR0706G141 Amborella trichopoda HOM05D007613 ORTHO05D009344 2.6e-06 56.2 122 31.1


User provided reference genes

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