Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19844 Avicennia marina HOM05D007260 ORTHO05D009149 1.3e-114 416.4 204 100.0
Migut.J01731 Erythranthe guttata HOM05D007260 ORTHO05D009149 3.4e-91 338.6 205 80.5
SalBow6G2074 Salvia bowleyana HOM05D007260 ORTHO05D009149 3.3e-86 322.0 199 78.9
SalBow6G0663 Salvia bowleyana HOM05D007260 ORTHO05D009149 2.8e-85 318.9 199 78.4
Oeu023130.1 Olea europaea HOM05D007260 ORTHO05D009149 2.1e-80 302.8 202 73.3
SGA_v2.0_scaffold105G30380 Striga asiatica HOM05D007260 ORTHO05D009149 2.3e-79 299.3 204 74.0
vmacro21973 Vaccinium macrocarpon HOM05D007260 ORTHO05D009149 3.6e-69 265.4 200 67.0
Lj1C1126T6 Lonicera japonica HOM05D007260 ORTHO05D009149 4.4e-67 258.5 204 62.3
Ciclev10005732m.g Citrus clementina HOM05D007260 ORTHO05D009149 3.5e-64 248.8 201 60.2
CiPaw.10G035100 Carya illinoinensis HOM05D007260 ORTHO05D009149 5.1e-63 245.0 201 59.7
QL07p003043 Quercus lobata HOM05D007260 ORTHO05D009149 7.4e-62 241.1 203 58.1
COL.COLO4_22299 Corchorus olitorius HOM05D007260 ORTHO05D009149 1.6e-61 240.0 209 58.9
GSVIVG01033239001 Vitis vinifera HOM05D007260 ORTHO05D009149 2.1e-61 239.6 205 58.0
Thecc.05G151300 Theobroma cacao HOM05D007260 ORTHO05D009149 3.6e-61 238.8 204 57.8
TAR633G2662 Trochodendron aralioides HOM05D007260 ORTHO05D009149 4.8e-61 238.4 197 58.4
Gohir.D03G072400 Gossypium hirsutum HOM05D007260 ORTHO05D009149 6.2e-61 238.0 203 56.2
Gorai.003G087400 Gossypium raimondii HOM05D007260 ORTHO05D009149 6.2e-61 238.0 203 56.2
Gohir.A02G107109 Gossypium hirsutum HOM05D007260 ORTHO05D009149 8.1e-61 237.7 203 56.7
Cfa016789 Carpinus fangiana HOM05D007260 ORTHO05D009149 1.8e-60 236.5 204 57.8
CANSAT80G0389 Cannabis sativa HOM05D007260 ORTHO05D009149 1.2e-59 233.8 208 55.8
CANSAT80G1528 Cannabis sativa HOM05D007260 ORTHO05D009149 2.6e-59 232.6 209 55.0
Nitab4.5_0000826g0300 Nicotiana tabacum HOM05D007260 ORTHO05D009149 4.5e-59 231.9 199 59.3
Potri.006G046350 Populus trichocarpa HOM05D007260 ORTHO05D009149 5.8e-59 231.5 200 58.0
Duzib106G0310 Durio zibethinus HOM05D007260 ORTHO05D009149 9.9e-59 230.7 200 57.5
PGSC0003DMG401012695 Solanum tuberosum HOM05D007260 ORTHO05D009149 9.9e-59 230.7 207 55.6
TWI74G0992 Tripterygium wilfordii HOM05D007260 ORTHO05D009149 2.2e-58 229.6 204 55.4
Cpa.g.sc182.9 Carica papaya HOM05D007260 ORTHO05D009149 8.4e-58 227.6 204 54.9
Eucgr.K02009 Eucalyptus grandis HOM05D007260 ORTHO05D009149 1.9e-57 226.5 200 55.0
Nitab4.5_0006870g0020 Nicotiana tabacum HOM05D007260 ORTHO05D009149 2.4e-57 226.1 206 56.3
Sabra06G0031900 Salix brachista HOM05D007260 ORTHO05D009149 2.4e-57 226.1 200 57.0
Eucgr.K01719 Eucalyptus grandis HOM05D007260 ORTHO05D009149 3.2e-57 225.7 200 55.0
Lsat_1_v5_gn_5_160501 Lactuca sativa HOM05D007260 ORTHO05D009149 3.2e-57 225.7 200 54.0
ClCG04G003650 Citrullus lanatus HOM05D007260 ORTHO05D009149 5.5e-57 224.9 205 54.1
Atru.chr1.1150 Acer truncatum HOM05D007260 ORTHO05D009149 7.1e-57 224.6 199 56.8
Cc06_g17880 Coffea canephora HOM05D007260 ORTHO05D009149 9.3e-57 224.2 195 59.0
DCAR_020507 Daucus carota HOM05D007260 ORTHO05D009149 3.5e-56 222.2 164 64.6
Sed0015422 Sechium edule HOM05D007260 ORTHO05D009149 7.9e-56 221.1 204 56.9
Nn2g15147 Nelumbo nucifera HOM05D007260 ORTHO05D009149 1.0e-55 220.7 201 53.2
Rhsim03G0028400 Rhododendron simsii HOM05D007260 ORTHO05D009149 3.0e-55 219.2 232 52.2
ECA248G0818 Erigeron canadensis HOM05D007260 ORTHO05D009149 5.1e-55 218.4 201 52.2
Sopen04g008360 Solanum pennellii HOM05D007260 ORTHO05D009149 1.1e-54 217.2 204 52.5
CsaV3_6G012930 Cucumis sativus L. HOM05D007260 ORTHO05D009149 1.9e-54 216.5 202 54.0
CAN.G676.12 Capsicum annuum HOM05D007260 ORTHO05D009149 3.3e-54 215.7 206 53.9
unitig_8.g3500 Utricularia gibba HOM05D000800 ORTHO05D000658 4.0e-52 208.8 205 57.6
Actinidia39206 Actinidia chinensis HOM05D007260 ORTHO05D009149 2.0e-51 206.5 148 66.9
Ah.13g076600 Amaranthus hybridus HOM05D007260 ORTHO05D009149 2.6e-51 206.1 201 50.7
RcHm_v2.0_Chr3g0483391 Rosa chinensis HOM05D007260 ORTHO05D009149 3.4e-51 205.7 206 53.9
Sc25g0005370 Simmondsia chinensis HOM05D007260 ORTHO05D009149 5.8e-51 204.9 207 51.2
Ca_08430_v3 Cicer arietinum L. HOM05D007260 ORTHO05D009149 1.0e-50 204.1 194 52.1
Aqoxy1G00296 Aquilegia oxysepala HOM05D007260 ORTHO05D009149 1.3e-50 203.8 205 47.8
Psat3g074400 Pisum sativum HOM05D007260 ORTHO05D009149 2.2e-50 203.0 198 51.0
AUR62026087 Chenopodium quinoa HOM05D007260 ORTHO05D009149 2.9e-50 202.6 196 50.5
Lalb_Chr01g0017381 Lupinus albus HOM05D007260 ORTHO05D009149 8.4e-50 201.1 200 49.0
EL10Ac3g07131 Beta vulgaris HOM05D007260 ORTHO05D009149 1.1e-49 200.7 204 46.6
THA.LOC104802057 Tarenaya hassleriana HOM05D007260 ORTHO05D009149 3.2e-49 199.1 202 49.5
Medtr7g091050 Medicago truncatula HOM05D007260 ORTHO05D009149 1.2e-48 197.2 198 49.0
AUR62024501 Chenopodium quinoa HOM05D007260 ORTHO05D009149 1.6e-48 196.8 196 49.5
MD14G1076800 Malus domestica HOM05D007260 ORTHO05D009149 2.1e-48 196.4 206 50.5
VMungo1309G2091 Vigna mungo HOM05D007260 ORTHO05D009149 3.5e-48 195.7 183 54.1
Phvul.008G158118 Phaseolus vulgaris HOM05D007260 ORTHO05D009149 4.6e-48 195.3 183 53.0
Lj1g0013385 Lotus japonicus HOM05D007260 ORTHO05D009149 6.0e-48 194.9 198 48.5
Carub.0004s2386 Capsella rubella HOM05D007260 ORTHO05D009149 1.3e-47 193.7 201 50.7
TPR.G18237 Trifolium pratense HOM05D007260 ORTHO05D009149 1.3e-47 193.7 205 48.3
FvH4_6g24410 Fragaria vesca HOM05D007260 ORTHO05D009149 1.8e-47 193.4 206 51.5
arahy.Tifrunner.gnm1.ann1.QMP5TS Arachis hypogaea HOM05D007260 ORTHO05D009149 2.3e-47 193.0 202 49.0
Aa31LG1G23620 Aethionema arabicum HOM05D007260 ORTHO05D009149 3.9e-47 192.2 197 51.3
AT2G41600 Arabidopsis thaliana HOM05D007260 ORTHO05D009149 3.9e-47 192.2 202 48.0
Sp4g23850 Schrenkiella parvula HOM05D007260 ORTHO05D009149 3.9e-47 192.2 201 47.8
arahy.Tifrunner.gnm1.ann1.HX298U Arachis hypogaea HOM05D007260 ORTHO05D009149 1.5e-46 190.3 202 48.0
Glyma.03G134300 Glycine max HOM05D007260 ORTHO05D009149 1.5e-46 190.3 183 50.8
Thhalv10017244m.g Eutrema salsugineum HOM05D007260 ORTHO05D009149 2.5e-46 189.5 201 47.8
Glyma.19G136500 Glycine max HOM05D007260 ORTHO05D009149 1.3e-45 187.2 184 51.1
HanXRQChr13g0396001 Helianthus annuus HOM05D007260 ORTHO05D009149 2.1e-45 186.4 162 54.3
AL4G39670 Arabidopsis lyrata HOM05D007260 ORTHO05D009149 2.8e-45 186.0 202 46.0
Manes.09G018400 Manihot esculenta HOM05D007260 ORTHO05D009149 6.3e-45 184.9 205 47.8
PSO782G2785 Papaver somniferum HOM05D007260 ORTHO05D009149 6.3e-45 184.9 185 53.0
CARHR136700 Cardamine hirsuta HOM05D007260 ORTHO05D009149 1.4e-44 183.7 200 47.0
MBI13_g10219_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 2.6e-43 179.5 158 55.7
Prupe.7G054700 Prunus persica HOM05D007260 ORTHO05D009149 7.6e-43 177.9 208 48.6
FAN02G1162 Fragaria x ananassa HOM05D007260 ORTHO05D009149 8.5e-42 174.5 210 48.1
BcaB06g29191 Brassica carinata HOM05D007260 ORTHO05D009149 1.9e-41 173.3 197 44.7
BraA04t18628Z Brassica rapa HOM05D007260 ORTHO05D009149 1.9e-41 173.3 200 46.5
A04p31710 Brassica napus HOM05D007260 ORTHO05D009149 2.5e-41 172.9 200 46.0
Hund19138 Selenicereus undatus HOM05D007260 ORTHO05D009149 3.2e-41 172.6 205 44.4
MBI13_g36811_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 5.5e-41 171.8 193 47.2
C04p69130 Brassica napus HOM05D007260 ORTHO05D009149 7.2e-41 171.4 201 45.3
BcaC02g07303 Brassica carinata HOM05D007260 ORTHO05D009149 9.3e-41 171.0 201 45.8
BolC4t28410H Brassica oleracea HOM05D007260 ORTHO05D009149 9.3e-41 171.0 201 45.8
Solyc04g016250.3 Solanum lycopersicum HOM05D007260 ORTHO05D009149 9.3e-41 171.0 173 49.1
Haze_19813 Corylus avellana HOM05D007260 ORTHO05D009149 6.1e-40 168.3 148 56.8
Peaxi162Scf00130g00720 Petunia axillaris HOM05D007260 ORTHO05D009149 1.0e-39 167.5 141 58.9
Haze_19810 Corylus avellana HOM05D007260 ORTHO05D009149 2.4e-36 156.4 137 56.2
Hma1.2p1_0110F.1_g052790 Hydrangea macrophylla HOM05D007260 ORTHO05D009149 3.1e-36 156.0 112 65.2
PSO063G4612 Papaver somniferum HOM05D007260 ORTHO05D009149 1.2e-35 154.1 248 38.7
Lj1P1128T41 Lonicera japonica HOM05D007260 ORTHO05D009149 2.6e-35 152.9 111 63.1
MELO3C013619.2 Cucumis melo HOM05D007260 ORTHO05D009149 4.2e-33 145.6 136 52.9
Dinv02794 Davidia involucrata HOM05D007260 ORTHO05D009149 1.2e-32 144.1 100 70.0
CSS0011677 Camellia sinensis var. sinensis HOM05D007260 ORTHO05D009149 3.6e-32 142.5 106 63.2
CDE04G0457 Ceratophyllum demersum HOM05D007260 ORTHO05D009149 4.3e-30 135.6 201 38.3
MBI13_g37004_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 1.3e-29 134.0 184 41.8
Zm00001eb405200 Zea mays HOM05D007260 ORTHO05D009149 1.4e-28 130.6 207 38.6
Os11g0140100 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 2.1e-24 116.7 202 36.1
ATR0188G026 Amborella trichopoda HOM05D007260 ORTHO05D009149 3.6e-24 115.9 148 41.2
Pp3c12_23320 Physcomitrium patens HOM05D001009 ORTHO05D000829 4.0e-15 85.9 194 32.0
SEGI_00639 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 3.7e-13 79.3 133 37.6
SEGI_24189 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 3.7e-13 79.3 133 37.6
SEGI_29096 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 3.7e-13 79.3 133 37.6
SMO197G0050 Selaginella moellendorffii HOM05D001009 ORTHO05D000829 1.0e-10 71.2 153 29.4
Os12g0136600 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 2.9e-10 69.7 104 36.5
Mapoly0001s0479 Marchantia polymorpha HOM05D001009 ORTHO05D000829 5.0e-10 68.9 218 27.5
MSTRG.11173 Avicennia marina HOM05D001009 ORTHO05D000829 6.5e-10 68.6 194 25.8
Aa31LG5G19830 Aethionema arabicum HOM05D001009 ORTHO05D000829 1.1e-09 67.8 205 31.2
arahy.Tifrunner.gnm1.ann1.4F3MJE Arachis hypogaea HOM05D001009 ORTHO05D000829 1.1e-09 67.8 200 30.0
TWI74G1509 Tripterygium wilfordii HOM05D001009 ORTHO05D000829 1.1e-09 67.8 192 30.2
Medtr5g080880 Medicago truncatula HOM05D001009 ORTHO05D000829 1.5e-09 67.4 213 32.4
EL10Ac9g22225 Beta vulgaris HOM05D001009 ORTHO05D000829 2.5e-09 66.6 208 25.0
Lalb_Chr17g0346401 Lupinus albus HOM05D001009 ORTHO05D000829 2.5e-09 66.6 196 30.1
arahy.Tifrunner.gnm1.ann1.FFR9P9 Arachis hypogaea HOM05D001009 ORTHO05D000829 3.2e-09 66.2 200 27.5
arahy.Tifrunner.gnm1.ann1.U1AIJ2 Arachis hypogaea HOM05D001009 ORTHO05D000829 3.2e-09 66.2 200 29.5
Ciclev10032528m.g Citrus clementina HOM05D001009 ORTHO05D000829 3.2e-09 66.2 201 29.9
arahy.Tifrunner.gnm1.ann1.B3W4AW Arachis hypogaea HOM05D001009 ORTHO05D000829 4.2e-09 65.9 200 30.0
Prupe.2G240700 Prunus persica HOM05D001009 ORTHO05D000829 4.2e-09 65.9 202 30.7
Zm00001eb124560 Zea mays HOM05D001009 ORTHO05D000829 5.5e-09 65.5 213 27.2
arahy.Tifrunner.gnm1.ann1.W9PXM2 Arachis hypogaea HOM05D001009 ORTHO05D000829 7.2e-09 65.1 198 27.3
CANSAT56G1474 Cannabis sativa HOM05D001009 ORTHO05D000829 7.2e-09 65.1 199 29.1
CARHR165660 Cardamine hirsuta HOM05D001009 ORTHO05D000829 7.2e-09 65.1 204 27.9
Sc06g0007180 Simmondsia chinensis HOM05D001009 ORTHO05D000829 9.4e-09 64.7 196 26.0
Phvul.008G230400 Phaseolus vulgaris HOM05D001009 ORTHO05D000829 1.6e-08 63.9 199 29.1
GSVIVG01017565001 Vitis vinifera HOM05D001009 ORTHO05D000829 1.6e-08 63.9 199 24.1
ATR0559G287 Amborella trichopoda HOM05D001009 ORTHO05D000829 2.1e-08 63.5 198 28.8
CANSAT56G0269 Cannabis sativa HOM05D001009 ORTHO05D000829 2.7e-08 63.2 200 25.0
Nitab4.5_0001454g0100 Nicotiana tabacum HOM05D001009 ORTHO05D000829 2.7e-08 63.2 190 25.3
HPP92_007460 Vanilla planifolia HOM05D001009 ORTHO05D000829 2.7e-08 63.2 200 29.5
Carub.0005s2235 Capsella rubella HOM05D001009 ORTHO05D000829 3.6e-08 62.8 200 28.5
Eucgr.E02483 Eucalyptus grandis HOM05D001009 ORTHO05D000829 3.6e-08 62.8 197 25.9
Psat2g038720 Pisum sativum HOM05D001009 ORTHO05D000829 3.6e-08 62.8 202 31.7
DCAR_025580 Daucus carota HOM05D001009 ORTHO05D000829 4.7e-08 62.4 192 24.5
SGA_v2.0_scaffold5G02758 Striga asiatica HOM05D001009 ORTHO05D000829 4.7e-08 62.4 193 23.3
Nitab4.5_0009423g0010 Nicotiana tabacum HOM05D001009 ORTHO05D000829 6.1e-08 62.0 197 24.9
VMungo0647G0043 Vigna mungo HOM05D001009 ORTHO05D000829 6.1e-08 62.0 199 28.1
CsaV3_7G031950 Cucumis sativus L. HOM05D001009 ORTHO05D000829 8.0e-08 61.6 193 23.3
Migut.I00712 Erythranthe guttata HOM05D001009 ORTHO05D000829 8.0e-08 61.6 202 23.8
Phvul.010G159900 Phaseolus vulgaris HOM05D001009 ORTHO05D000829 8.0e-08 61.6 199 22.1
LjContig00141g0011947 Lotus japonicus HOM05D001009 ORTHO05D000829 1.0e-07 61.2 201 27.4
TPR.G27325 Trifolium pratense HOM05D001009 ORTHO05D000829 1.0e-07 61.2 197 25.4
Actinidia13891 Actinidia chinensis HOM05D001009 ORTHO05D000829 1.4e-07 60.8 205 27.8
unitig_0.g1108 Utricularia gibba HOM05D001009 ORTHO05D000829 1.4e-07 60.8 206 22.3
Glyma.14G065700 Glycine max HOM05D001009 ORTHO05D000829 1.8e-07 60.5 201 27.9
CSS0039760 Camellia sinensis var. sinensis HOM05D001009 ORTHO05D000829 2.3e-07 60.1 202 23.8
AL5G36810 Arabidopsis lyrata HOM05D001009 ORTHO05D000829 4.0e-07 59.3 126 34.9
Ciclev10026378m.g Citrus clementina HOM05D001009 ORTHO05D000829 5.2e-07 58.9 193 25.4
MBI01_g22963_MAGBIO Magnolia biondii HOM05D001009 ORTHO05D000829 5.2e-07 58.9 61 44.3
RcHm_v2.0_Chr6g0299721 Rosa chinensis HOM05D001009 ORTHO05D000829 5.2e-07 58.9 188 25.0
vmacro19043 Vaccinium macrocarpon HOM05D001009 ORTHO05D000829 5.2e-07 58.9 212 24.5
ATR0693G259 Amborella trichopoda HOM05D001009 ORTHO05D000829 6.8e-07 58.5 206 23.3
Os11g0139900 Oryza sativa ssp. japonica HOM05D003296 ORTHO05D003720 6.8e-07 58.5 51 54.9
Sopen06g024290 Solanum pennellii HOM05D001009 ORTHO05D000829 6.8e-07 58.5 208 27.9
Zm00001eb306190 Zea mays HOM05D007260 ORTHO05D009149 6.8e-07 58.5 109 37.6
MELO3C016977.2 Cucumis melo HOM05D001009 ORTHO05D000829 8.8e-07 58.2 192 23.4
Eucgr.E02491 Eucalyptus grandis HOM05D001009 ORTHO05D000829 8.8e-07 58.2 197 25.4
Manes.11G064600 Manihot esculenta HOM05D001009 ORTHO05D000829 8.8e-07 58.2 192 25.0
Sed0018913 Sechium edule HOM05D001009 ORTHO05D000829 1.2e-06 57.8 192 25.0
Cpa.g.sc10.106 Carica papaya HOM05D001009 ORTHO05D000829 1.5e-06 57.4 195 23.1
Ca_05905_v3 Cicer arietinum L. HOM05D001009 ORTHO05D000829 1.5e-06 57.4 205 26.3
MD12G1094400 Malus domestica HOM05D001009 ORTHO05D000829 1.5e-06 57.4 192 28.6
Hund06528 Selenicereus undatus HOM05D001009 ORTHO05D000829 1.5e-06 57.4 187 26.7
Psat6g028840 Pisum sativum HOM05D001009 ORTHO05D000829 2.0e-06 57.0 192 24.5
Psat3g135840 Pisum sativum HOM05D001009 ORTHO05D000829 2.6e-06 56.6 200 26.0
FAN15G3362 Fragaria x ananassa HOM05D001009 ORTHO05D000829 3.4e-06 56.2 188 25.0
Glyma.02G251000 Glycine max HOM05D001009 ORTHO05D000829 3.4e-06 56.2 200 28.0
Cre10.g447100 Chlamydomonas reinhardtii HOM05D001009 ORTHO05D000829 4.4e-06 55.8 90 32.2
PGSC0003DMG400026135 Solanum tuberosum HOM05D001009 ORTHO05D000829 4.4e-06 55.8 208 25.5
TAR629G0184 Trochodendron aralioides HOM05D001009 ORTHO05D000829 4.4e-06 55.8 211 22.7
FvH4_2g40840 Fragaria vesca HOM05D001009 ORTHO05D000829 5.7e-06 55.5 188 24.5
Medtr7g063520 Medicago truncatula HOM05D001009 ORTHO05D000829 5.7e-06 55.5 61 42.6
Os01g0143700 Oryza sativa ssp. japonica HOM05D001009 ORTHO05D000829 5.7e-06 55.5 114 33.3
Peaxi162Scf00430g00310 Petunia axillaris HOM05D001009 ORTHO05D000829 5.7e-06 55.5 206 24.3
Oeu010366.1 Olea europaea HOM05D001009 ORTHO05D000829 7.5e-06 55.1 206 22.3
CsaV3_6G001390 Cucumis sativus L. HOM05D001009 ORTHO05D000829 9.8e-06 54.7 218 28.0
PSO339G2987 Papaver somniferum HOM05D001009 ORTHO05D000829 9.8e-06 54.7 206 26.2


User provided reference genes

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