Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 5.7e-261 903.7 438 100.0
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 3.6e-239 831.2 438 89.7
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 2.9e-233 811.6 436 88.3
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 4.0e-230 801.2 434 86.9
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 5.2e-230 800.8 438 85.4
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 5.2e-230 800.8 434 87.1
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 1.2e-229 799.7 436 87.2
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.5e-229 799.3 437 86.5
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.0e-229 798.9 435 86.9
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 2.6e-229 798.5 435 86.7
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 5.7e-229 797.3 428 87.9
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.7e-228 795.8 437 84.7
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 7.0e-227 790.4 524 75.4
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 3.5e-226 788.1 437 85.1
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 7.7e-226 786.9 438 84.5
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 1.0e-225 786.6 437 84.0
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 6.5e-225 783.9 437 84.4
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 6.5e-225 783.9 494 76.3
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 1.1e-224 783.1 438 83.8
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 3.2e-224 781.6 452 82.3
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 5.5e-224 780.8 438 82.4
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 9.4e-224 780.0 438 83.1
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 1.2e-223 779.6 437 84.0
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 2.1e-223 778.9 509 75.6
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 4.7e-223 777.7 438 82.9
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 6.1e-223 777.3 437 83.8
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 8.0e-223 776.9 435 83.9
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 5.2e-222 774.2 438 83.1
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 8.8e-222 773.5 435 82.1
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 1.5e-221 772.7 434 83.9
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 1.5e-221 772.7 438 82.6
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 2.0e-221 772.3 436 82.1
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 3.4e-221 771.5 434 83.6
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 3.4e-221 771.5 434 83.6
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 7.5e-221 770.4 434 83.4
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 7.5e-221 770.4 437 82.6
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 7.5e-221 770.4 433 83.4
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 3.7e-220 768.1 438 82.2
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 3.7e-220 768.1 437 81.7
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 8.3e-220 766.9 437 81.5
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 8.3e-220 766.9 435 82.1
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.8e-219 765.8 428 84.3
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 2.4e-219 765.4 438 81.7
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.4e-219 765.4 433 83.1
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 9.1e-219 763.5 430 82.8
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 9.1e-219 763.5 433 82.7
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 2.0e-218 762.3 429 83.7
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 2.7e-218 761.9 438 81.1
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 3.5e-218 761.5 428 83.4
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 4.5e-218 761.1 437 81.5
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 7.7e-218 760.4 436 81.4
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 7.7e-218 760.4 433 82.7
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.3e-217 759.6 434 81.6
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.3e-217 759.6 434 81.6
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.3e-217 759.6 438 80.8
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 1.3e-217 759.6 432 82.4
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 1.3e-217 759.6 435 81.4
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 1.7e-217 759.2 428 83.2
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.7e-217 759.2 430 81.2
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.3e-217 758.8 433 82.4
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 3.8e-217 758.1 428 82.7
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 3.8e-217 758.1 438 80.1
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 3.8e-217 758.1 428 83.2
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 5.0e-217 757.7 429 83.4
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 6.6e-217 757.3 428 82.7
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.1e-216 756.5 431 82.1
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 2.5e-216 755.4 437 81.7
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.3e-216 755.0 445 80.0
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 3.3e-216 755.0 438 81.7
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 4.2e-216 754.6 437 81.0
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 7.2e-216 753.8 435 80.7
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 3.6e-215 751.5 443 80.6
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 1.8e-214 749.2 434 82.3
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 6.8e-214 747.3 438 80.4
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 8.9e-214 746.9 428 81.3
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 8.9e-214 746.9 436 79.6
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 4.4e-213 744.6 473 75.1
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 1.3e-212 743.0 435 79.1
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 1.7e-212 742.7 438 79.7
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 1.7e-212 742.7 413 85.5
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.4e-211 739.6 434 79.3
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 1.8e-211 739.2 430 79.3
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 1.2e-210 736.5 433 79.2
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 1.3e-209 733.0 418 84.0
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 2.3e-209 732.3 435 78.6
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 5.2e-206 721.1 434 78.8
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 1.5e-205 719.5 405 83.7
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 5.8e-205 717.6 437 77.6
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 1.4e-203 713.0 435 77.9
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 9.2e-203 710.3 437 75.5
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 6.0e-202 707.6 392 85.7
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 1.2e-199 699.9 409 80.2
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 6.2e-199 697.6 402 80.8
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.4e-197 691.8 438 76.0
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.9e-196 688.7 427 75.9
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 8.3e-196 687.2 434 75.8
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 1.9e-195 686.0 441 73.0
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 7.8e-194 680.6 440 73.2
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.9e-192 676.0 434 73.3
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 2.4e-187 659.1 426 72.1
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 6.6e-185 651.0 427 71.2
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 5.2e-182 641.3 435 67.8
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 2.0e-181 639.4 438 72.8
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 3.4e-181 638.6 437 67.5
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 2.4e-179 632.5 330 89.4
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 2.7e-178 629.0 342 86.5
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.3e-177 626.7 427 70.0
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 3.9e-177 625.2 341 85.6
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 6.9e-174 614.4 436 65.8
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 2.0e-173 612.8 339 85.5
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.0e-169 600.5 433 65.6
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 3.0e-169 599.0 387 73.9
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.9e-168 596.3 435 70.1
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 2.8e-167 592.4 436 64.2
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.4e-166 590.1 355 79.4
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 6.0e-162 574.7 438 62.1
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.9e-161 572.0 438 61.4
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 1.5e-160 570.1 426 61.7
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 8.1e-159 564.3 439 62.6
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 4.9e-148 528.5 337 73.6
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 5.5e-147 525.0 354 70.6
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 3.9e-145 518.8 293 81.9
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.8e-140 502.3 431 56.4
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 8.8e-137 491.1 381 65.6
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 1.1e-128 464.2 443 51.5
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 6.1e-114 415.2 224 87.9
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 1.7e-111 407.1 352 59.9
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 9.4e-107 391.3 243 77.0
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 2.8e-90 336.7 228 69.7
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 3.2e-78 296.6 189 73.0
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.1e-73 280.0 176 73.3
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.0e-73 279.6 158 83.5
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 5.4e-70 269.2 145 86.9
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 5.6e-67 259.2 197 68.0
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.2e-62 243.4 134 86.6
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.7e-61 240.4 230 57.8
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.6e-50 203.4 113 81.4
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.2e-47 194.1 107 79.4
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 4.3e-43 179.9 137 66.4
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.8e-36 157.9 88 83.0
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 6.3e-34 149.4 93 75.3
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 3.8e-31 140.2 204 40.7
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 8.4e-31 139.0 165 47.9
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 8.4e-31 139.0 82 81.7
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 4.8e-26 123.2 78 74.4
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 6.9e-25 119.4 67 79.1
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.1e-21 107.8 269 31.6
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 2.7e-21 107.5 63 81.0
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 1.0e-20 105.5 57 77.2
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 6.7e-20 102.8 72 61.1
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 5.5e-14 83.2 118 41.5
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.2e-13 82.0 83 50.6
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 3.6e-13 80.5 38 86.8
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 2.0e-11 74.7 157 34.4
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 8.2e-10 69.3 35 85.7
Migut.N03294 Erythranthe guttata HOM05D002051 ORTHO05D002041 5.3e-09 66.6 383 25.1
Os01g0560000 Oryza sativa ssp. japonica HOM05D000617 ORTHO05D000478 4.5e-08 63.5 256 27.3
MSTRG.22610 Avicennia marina HOM05D000617 ORTHO05D000478 8.5e-07 59.3 248 24.6
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 1.1e-06 58.9 35 71.4
Mapoly0073s0071 Marchantia polymorpha HOM05D002051 ORTHO05D002041 7.2e-06 56.2 336 21.1
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 7.2e-06 56.2 69 47.8


User provided reference genes

Program Settings