Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 4.5e-145 518.1 293 100.0
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 3.6e-126 455.3 294 80.3
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 8.0e-118 427.6 294 76.9
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 5.7e-116 421.4 294 76.2
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 4.8e-115 418.3 293 71.7
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 1.4e-114 416.8 286 76.6
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 4.1e-114 415.2 294 72.8
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 1.0e-112 410.6 294 73.1
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 3.8e-112 408.7 293 70.3
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 1.1e-111 407.1 294 70.4
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.5e-111 406.8 295 71.9
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.5e-111 406.8 295 71.9
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.5e-111 406.8 292 70.5
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 1.9e-111 406.4 294 70.1
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 3.2e-111 405.6 293 69.6
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 5.5e-111 404.8 295 71.5
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 1.8e-109 399.8 293 68.6
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.3e-109 399.4 295 70.5
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 2.3e-109 399.4 293 68.6
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 2.3e-109 399.4 296 70.3
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 4.0e-109 398.7 295 69.5
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 6.7e-109 397.9 293 67.6
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 1.2e-108 397.1 290 69.3
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 1.2e-108 397.1 295 68.8
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 2.0e-108 396.4 293 67.9
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 3.3e-108 395.6 293 68.9
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 3.3e-108 395.6 295 68.8
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 5.7e-108 394.8 293 67.2
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 7.5e-108 394.4 293 68.9
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 7.5e-108 394.4 293 67.6
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 9.7e-108 394.0 293 66.6
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 9.7e-108 394.0 298 68.5
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 9.7e-108 394.0 293 67.2
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 1.3e-107 393.7 293 68.6
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 1.3e-107 393.7 294 68.4
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.3e-107 393.7 294 68.4
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 1.3e-107 393.7 294 68.4
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 1.3e-107 393.7 293 67.9
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 2.2e-107 392.9 294 68.0
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 2.8e-107 392.5 293 67.2
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 4.8e-107 391.7 294 67.3
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 4.8e-107 391.7 293 67.2
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 6.3e-107 391.3 291 69.8
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 8.3e-107 391.0 295 68.1
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 1.4e-106 390.2 293 68.9
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 1.4e-106 390.2 296 66.2
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 3.1e-106 389.0 295 70.5
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 3.1e-106 389.0 293 66.9
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 5.3e-106 388.3 293 68.6
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 7.0e-106 387.9 293 67.9
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 1.2e-105 387.1 294 67.7
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 1.2e-105 387.1 293 66.9
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 2.0e-105 386.3 293 66.6
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 2.0e-105 386.3 291 69.1
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 2.7e-105 386.0 294 66.3
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 2.7e-105 386.0 351 60.7
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.5e-105 385.6 292 67.8
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 3.5e-105 385.6 296 65.9
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 4.5e-105 385.2 293 65.5
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 5.9e-105 384.8 292 68.5
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.0e-104 384.0 294 66.7
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 1.3e-104 383.6 296 67.2
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 1.7e-104 383.3 295 70.2
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 6.5e-104 381.3 317 63.1
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 8.5e-104 380.9 295 65.8
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.5e-103 380.2 294 66.7
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.9e-103 379.8 294 66.0
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 2.5e-103 379.4 294 65.6
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 3.2e-103 379.0 294 65.6
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 3.2e-103 379.0 319 61.8
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 4.2e-103 378.6 294 66.0
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 4.2e-103 378.6 293 63.8
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 2.1e-102 376.3 294 66.3
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 4.7e-102 375.2 291 66.7
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 6.1e-102 374.8 323 60.7
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.8e-101 373.2 321 62.3
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 2.3e-101 372.9 306 64.4
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 2.3e-101 372.9 306 64.4
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 3.0e-101 372.5 296 63.5
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.2e-100 370.5 297 66.3
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 3.4e-100 369.0 294 64.3
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 9.8e-100 367.5 306 63.7
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 3.7e-99 365.5 328 61.0
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.4e-98 363.6 290 63.8
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 3.1e-98 362.5 327 59.3
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 4.1e-98 362.1 296 63.5
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.5e-95 353.6 295 62.4
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 3.3e-95 352.4 305 62.0
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.2e-94 350.5 294 60.9
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 2.1e-94 349.7 296 61.8
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 4.7e-94 348.6 292 61.0
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 8.0e-94 347.8 299 62.2
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.0e-93 347.4 296 60.8
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 5.2e-93 345.1 296 61.1
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 8.9e-93 344.4 306 58.5
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 1.3e-91 340.5 272 67.6
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 2.2e-91 339.7 298 59.7
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 2.2e-91 339.7 224 74.1
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 2.8e-91 339.3 221 75.6
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 2.8e-91 339.3 294 59.5
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 3.7e-91 339.0 296 60.5
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 6.3e-91 338.2 300 60.7
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 6.3e-91 338.2 289 62.3
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.4e-90 337.0 291 61.5
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 1.4e-90 337.0 294 59.9
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.0e-88 330.9 225 72.0
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 1.0e-88 330.9 287 62.0
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.3e-88 330.5 294 60.5
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 6.6e-88 328.2 341 54.3
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.1e-87 327.4 294 59.9
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 2.5e-87 326.2 291 60.1
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 5.6e-87 325.1 224 71.0
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 1.6e-86 323.6 292 59.9
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 2.8e-86 322.8 301 58.5
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 4.0e-85 318.9 263 63.1
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 2.3e-80 303.1 205 75.1
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 3.9e-80 302.4 307 53.7
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 1.8e-77 293.5 196 73.0
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 2.6e-76 289.7 294 57.1
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 2.2e-75 286.6 299 54.2
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 4.9e-75 285.4 313 51.8
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.1e-73 280.0 293 50.9
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 2.1e-73 280.0 294 54.8
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 3.3e-71 272.7 263 55.9
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 1.2e-70 270.8 293 52.6
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 3.1e-69 266.2 275 56.0
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.6e-68 263.1 274 51.8
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 4.4e-68 262.3 293 51.2
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 9.9e-68 261.2 217 65.9
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 2.2e-67 260.0 329 48.6
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 2.9e-67 259.6 260 53.5
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 6.4e-67 258.5 206 69.4
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 4.6e-65 252.3 205 62.9
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 4.6e-65 252.3 367 43.6
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 1.3e-64 250.8 219 57.1
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 2.3e-64 250.0 289 52.6
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 3.3e-63 246.1 205 62.0
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 7.3e-63 245.0 205 62.4
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 1.5e-60 237.3 290 48.3
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 3.2e-58 229.6 178 64.6
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 1.2e-57 227.6 174 68.4
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 3.9e-56 222.6 320 37.5
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 3.2e-50 203.0 333 36.9
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 9.9e-44 181.4 110 76.4
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.9e-40 169.5 253 39.9
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 1.9e-39 167.2 90 90.0
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 8.7e-32 141.7 101 71.3
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 3.2e-26 123.2 79 70.9
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 7.9e-25 118.6 310 36.5
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.4e-21 107.8 101 75.2
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 2.7e-17 93.6 60 76.7
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 1.5e-15 87.8 127 43.3
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 9.7e-15 85.1 142 44.4
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 2.2e-14 84.0 149 40.3
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 1.1e-13 81.6 332 25.3
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 9.1e-13 78.6 82 53.7
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 3.4e-12 76.6 45 82.2
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 3.0e-08 63.5 42 66.7
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.5e-07 61.2 38 68.4


User provided reference genes

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