Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 1.9e-77 292.4 143 100.0
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 2.2e-52 209.1 144 73.6
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 2.1e-47 192.6 143 71.3
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 8.0e-47 190.7 144 69.4
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 1.5e-40 169.9 143 62.9
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 1.2e-39 166.8 124 71.8
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 4.7e-39 164.9 127 67.7
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 5.2e-38 161.4 124 66.9
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 9.8e-37 157.1 156 57.1
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 2.8e-36 155.6 124 64.5
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 1.2e-34 150.2 144 59.0
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 2.0e-34 149.4 148 54.7
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.3e-33 146.0 142 54.9
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 6.6e-33 144.4 147 54.4
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 6.6e-33 144.4 145 55.2
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 2.8e-31 139.0 144 54.2
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 4.7e-31 138.3 144 54.2
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 4.7e-31 138.3 140 52.9
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 1.5e-29 133.3 128 57.0
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 3.4e-29 132.1 140 53.6
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 5.8e-29 131.3 139 53.2
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 5.8e-29 131.3 136 58.8
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 7.5e-29 131.0 151 50.3
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 9.8e-29 130.6 152 50.0
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 2.9e-28 129.0 139 52.5
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 8.3e-28 127.5 129 56.6
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 1.4e-27 126.7 152 48.7
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 2.4e-27 125.9 142 50.7
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 4.1e-27 125.2 124 59.7
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 5.4e-27 124.8 129 55.8
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 7.0e-27 124.4 151 50.3
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 7.0e-27 124.4 130 54.6
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 9.2e-27 124.0 154 49.4
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 9.2e-27 124.0 146 49.3
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.0e-26 122.9 146 49.3
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 2.7e-26 122.5 148 50.0
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 2.7e-26 122.5 178 45.5
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 4.6e-26 121.7 139 51.1
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 6.0e-26 121.3 139 51.1
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 6.0e-26 121.3 148 48.6
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 7.8e-26 120.9 143 50.3
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 1.0e-25 120.6 180 42.8
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 1.0e-25 120.6 139 49.6
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 1.3e-25 120.2 140 51.4
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 2.3e-25 119.4 149 47.7
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 2.3e-25 119.4 149 47.7
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 2.3e-25 119.4 147 47.6
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 2.3e-25 119.4 140 51.4
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 2.3e-25 119.4 145 46.9
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 2.3e-25 119.4 151 49.0
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 2.3e-25 119.4 131 55.0
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 2.3e-25 119.4 152 46.7
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 3.9e-25 118.6 149 47.7
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 3.9e-25 118.6 153 47.7
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 6.6e-25 117.9 148 47.3
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 6.6e-25 117.9 124 53.2
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 8.6e-25 117.5 148 47.3
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 8.6e-25 117.5 126 52.4
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 1.9e-24 116.3 148 45.3
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 1.9e-24 116.3 148 46.6
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 1.9e-24 116.3 149 46.3
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 2.5e-24 115.9 148 45.9
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 2.5e-24 115.9 139 47.5
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 5.6e-24 114.8 143 47.6
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 5.6e-24 114.8 147 46.3
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 7.3e-24 114.4 145 46.9
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 7.3e-24 114.4 155 41.3
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 9.5e-24 114.0 148 46.6
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 9.5e-24 114.0 129 49.6
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 9.5e-24 114.0 149 48.3
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 1.2e-23 113.6 144 53.5
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 1.2e-23 113.6 154 47.4
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 1.2e-23 113.6 120 52.5
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 1.6e-23 113.2 121 55.4
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 1.6e-23 113.2 151 47.7
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 2.1e-23 112.8 125 52.0
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 2.1e-23 112.8 152 44.7
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 2.8e-23 112.5 149 44.3
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 2.8e-23 112.5 139 46.8
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 3.6e-23 112.1 149 45.6
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 4.7e-23 111.7 149 45.6
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 6.2e-23 111.3 148 44.6
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 6.2e-23 111.3 155 47.1
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 6.2e-23 111.3 146 46.6
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 8.0e-23 110.9 149 43.6
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 1.8e-22 109.8 137 48.2
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 1.8e-22 109.8 158 43.0
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 2.3e-22 109.4 142 47.2
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 3.1e-22 109.0 138 44.9
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 3.1e-22 109.0 143 45.5
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 4.0e-22 108.6 151 45.0
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 5.2e-22 108.2 126 48.4
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 6.8e-22 107.8 158 43.7
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 8.9e-22 107.5 145 46.2
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 8.9e-22 107.5 139 46.8
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 8.9e-22 107.5 140 48.6
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 8.9e-22 107.5 151 45.7
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 1.2e-21 107.1 143 46.2
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 1.5e-21 106.7 128 50.8
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 2.0e-21 106.3 145 46.9
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 2.6e-21 105.9 127 49.6
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.6e-21 105.9 122 45.1
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 2.6e-21 105.9 139 46.8
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 3.4e-21 105.5 140 43.6
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 3.4e-21 105.5 143 43.4
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 4.4e-21 105.1 126 50.0
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 4.4e-21 105.1 134 50.0
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 5.8e-21 104.8 142 45.1
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 5.8e-21 104.8 145 45.5
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 5.8e-21 104.8 141 44.7
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 7.5e-21 104.4 143 41.3
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 7.5e-21 104.4 138 44.9
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 7.5e-21 104.4 139 45.3
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.3e-20 103.6 145 44.8
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 1.3e-20 103.6 133 48.1
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 1.3e-20 103.6 145 46.9
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.7e-20 103.2 160 44.4
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 3.7e-20 102.1 125 44.8
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 4.9e-20 101.7 126 47.6
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 6.4e-20 101.3 139 44.6
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 8.3e-20 100.9 120 48.3
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 1.1e-19 100.5 138 42.8
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 1.1e-19 100.5 136 44.9
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 1.9e-19 99.8 122 48.4
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.9e-19 99.8 139 45.3
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.4e-19 99.4 145 44.1
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 3.2e-19 99.0 167 40.7
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 3.2e-19 99.0 120 45.8
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 4.1e-19 98.6 145 42.1
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 9.2e-19 97.4 179 38.0
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 1.2e-18 97.1 163 41.1
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 3.5e-18 95.5 107 53.3
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.0e-17 94.0 120 46.7
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 1.3e-17 93.6 138 40.6
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 2.3e-17 92.8 126 45.2
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 3.9e-17 92.0 162 39.5
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 3.3e-16 89.0 102 47.1
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 3.3e-16 89.0 81 59.3
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 3.3e-16 89.0 156 37.8
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 5.6e-16 88.2 162 38.3
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 7.3e-16 87.8 151 39.1
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.1e-15 86.3 162 37.7
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.1e-15 86.3 162 37.7
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 2.8e-15 85.9 149 38.9
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 1.1e-14 84.0 145 41.4
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 3.1e-14 82.4 156 38.5
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 1.2e-13 80.5 99 50.5
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 5.8e-13 78.2 64 56.2
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 1.7e-12 76.6 96 49.0
AUR62021312 Chenopodium quinoa HOM05D004757 ORTHO05D005743 1.7e-09 66.6 97 43.3
AUR62033229 Chenopodium quinoa HOM05D004757 ORTHO05D005743 5.1e-09 65.1 97 42.3
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 2.1e-07 59.7 101 43.6
Peaxi162Scf00417g00054 Petunia axillaris HOM05D004757 ORTHO05D005743 8.9e-06 54.3 75 49.3


User provided reference genes

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