Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 3.7e-64 248.1 125 100.0
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.5e-41 172.9 122 73.0
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.2e-40 169.1 119 73.9
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 4.8e-40 167.9 123 72.4
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.4e-39 166.4 118 73.7
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 3.5e-38 161.8 123 68.3
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 6.5e-37 157.5 123 69.1
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 5.5e-36 154.5 114 71.1
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.8e-35 152.1 114 70.2
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 6.1e-35 151.0 124 61.3
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 6.1e-35 151.0 112 65.2
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 1.8e-34 149.4 120 67.5
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 4.0e-34 148.3 114 68.4
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.5e-33 146.4 116 65.5
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 3.4e-33 145.2 128 64.8
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 4.4e-33 144.8 135 63.7
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 4.4e-33 144.8 112 66.1
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 5.7e-33 144.4 118 63.6
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 7.5e-33 144.1 112 63.4
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 1.7e-32 142.9 120 63.3
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.2e-32 142.5 112 61.6
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 6.3e-32 141.0 112 61.6
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.4e-31 139.8 112 60.7
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 3.1e-31 138.7 117 61.5
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 5.4e-31 137.9 117 65.0
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 9.2e-31 137.1 130 61.5
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 9.2e-31 137.1 126 61.1
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.2e-30 136.7 114 63.2
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.6e-30 136.3 115 60.9
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 3.5e-30 135.2 131 58.0
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 7.8e-30 134.0 116 57.8
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.0e-29 133.7 116 61.2
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 1.0e-29 133.7 130 56.9
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.0e-29 133.7 135 57.0
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.9e-29 132.1 122 59.0
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 6.6e-29 131.0 115 60.9
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 8.6e-29 130.6 117 59.0
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 8.6e-29 130.6 120 56.7
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.5e-28 129.8 122 58.2
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 3.3e-28 128.6 116 57.8
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 4.3e-28 128.3 114 58.8
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 7.3e-28 127.5 112 58.9
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 7.3e-28 127.5 123 56.1
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 9.5e-28 127.1 117 58.1
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 1.2e-27 126.7 132 53.8
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 2.1e-27 125.9 123 56.9
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 2.8e-27 125.6 144 56.2
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 2.8e-27 125.6 126 55.6
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.6e-27 125.2 126 56.3
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.6e-27 125.2 126 56.3
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.6e-27 125.2 126 57.1
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 3.6e-27 125.2 119 55.5
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 6.1e-27 124.4 118 56.8
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.8e-26 122.9 126 56.3
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 2.3e-26 122.5 124 56.5
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 6.8e-26 120.9 126 54.8
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.2e-25 120.2 126 54.0
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.6e-25 119.0 108 60.2
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 5.8e-25 117.9 129 57.4
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 9.8e-25 117.1 117 54.7
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 1.3e-24 116.7 129 55.8
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.7e-24 116.3 111 55.0
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.7e-24 116.3 126 53.2
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 4.9e-24 114.8 112 56.2
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 8.3e-24 114.0 120 54.2
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.2e-22 110.2 125 52.0
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.6e-22 109.8 141 47.5
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 2.0e-22 109.4 131 49.6
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 3.5e-22 108.6 131 49.6
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 4.6e-22 108.2 122 48.4
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 4.6e-22 108.2 122 48.4
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 7.8e-22 107.5 122 47.5
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 7.8e-22 107.5 112 52.7
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.3e-21 106.7 112 51.8
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 1.7e-21 106.3 129 48.1
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 1.7e-21 106.3 122 50.8
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 3.0e-21 105.5 131 48.9
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 3.0e-21 105.5 131 48.9
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 3.9e-21 105.1 122 49.2
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 5.0e-21 104.8 119 52.9
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 5.0e-21 104.8 126 50.8
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.0e-21 104.8 126 50.8
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 6.6e-21 104.4 117 52.1
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.6e-21 104.4 123 51.2
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.6e-21 104.4 123 51.2
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 8.6e-21 104.0 123 48.8
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 8.6e-21 104.0 125 52.0
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 1.9e-20 102.8 122 47.5
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 1.9e-20 102.8 113 53.1
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 2.5e-20 102.4 125 48.0
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.5e-20 102.4 117 48.7
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.3e-20 102.1 113 52.2
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 3.3e-20 102.1 123 48.8
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 4.3e-20 101.7 115 52.2
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 5.6e-20 101.3 120 48.3
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 5.6e-20 101.3 120 48.3
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 5.6e-20 101.3 108 46.3
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.3e-20 100.9 119 52.9
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 7.3e-20 100.9 119 52.9
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 9.5e-20 100.5 124 48.4
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 2.1e-19 99.4 108 51.9
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 2.8e-19 99.0 151 41.7
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 4.7e-19 98.2 148 41.9
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 6.2e-19 97.8 119 49.6
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 6.2e-19 97.8 116 50.9
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 6.2e-19 97.8 119 48.7
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 8.0e-19 97.4 138 44.2
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.4e-18 96.7 119 50.4
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.4e-18 96.7 120 46.7
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 1.4e-18 96.7 123 48.8
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.8e-18 96.3 117 49.6
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 2.3e-18 95.9 121 47.9
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.0e-18 95.1 113 51.3
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 8.9e-18 94.0 112 52.7
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 8.9e-18 94.0 115 47.0
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 8.9e-18 94.0 119 46.2
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 8.9e-18 94.0 91 58.2
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.2e-17 93.6 113 50.4
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 1.2e-17 93.6 118 50.0
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 1.2e-17 93.6 126 49.2
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.5e-17 93.2 109 45.9
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.5e-17 93.2 112 49.1
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 2.0e-17 92.8 115 50.4
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 2.0e-17 92.8 111 49.5
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 2.6e-17 92.4 112 49.1
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.8e-17 91.3 99 54.5
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 7.5e-17 90.9 118 49.2
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 7.5e-17 90.9 116 47.4
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 2.2e-16 89.4 113 46.9
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 2.9e-16 89.0 149 42.3
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 2.9e-16 89.0 132 43.2
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.7e-16 88.6 123 48.8
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 3.7e-16 88.6 118 46.6
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 4.9e-16 88.2 132 47.0
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 8.3e-16 87.4 99 52.5
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.1e-15 87.0 99 53.5
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.1e-15 87.0 134 44.8
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.9e-15 86.3 117 43.6
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.2e-15 85.5 120 44.2
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 6.0e-14 81.3 123 45.5
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 3.0e-13 79.0 163 38.0
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 3.0e-13 79.0 160 35.0
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.9e-13 78.6 128 40.6
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 9.5e-12 73.9 81 50.6
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 9.5e-12 73.9 81 50.6
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 1.2e-11 73.6 134 40.3
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 2.1e-11 72.8 72 54.2
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 4.7e-11 71.6 116 41.4
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 4.7e-11 71.6 128 39.1
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 6.2e-11 71.2 106 40.6
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 1.4e-10 70.1 119 42.9
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 1.4e-10 70.1 156 33.3
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.3e-10 69.3 83 44.6
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 5.2e-10 68.2 143 35.7
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 2.0e-09 66.2 127 37.8
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 2.6e-09 65.9 119 41.2
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 3.4e-09 65.5 116 37.9
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 3.4e-09 65.5 86 46.5
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 7.5e-09 64.3 110 38.2
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 2.9e-08 62.4 116 36.2
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 8.3e-08 60.8 139 34.5
Cfa013272 Carpinus fangiana HOM05D001798 ORTHO05D005040 5.4e-07 58.2 105 35.2
Cpa.g.sc95.59 Carica papaya HOM05D001798 ORTHO05D005040 9.2e-07 57.4 97 39.2
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 9.2e-07 57.4 116 40.5
Haze_21743 Corylus avellana HOM05D001798 ORTHO05D005040 1.6e-06 56.6 99 37.4
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 1.6e-06 56.6 98 38.8
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.1e-06 56.2 98 43.9
Glyma.06G076800 Glycine max HOM05D021496 ORTHO05D022761 2.7e-06 55.8 98 39.8
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 7.8e-06 54.3 117 39.3


User provided reference genes

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