Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 4.3e-122 441.4 236 100.0
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 1.0e-51 207.6 192 61.5
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 1.2e-42 177.6 192 57.8
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 7.0e-40 168.3 189 56.1
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 1.2e-39 167.5 197 53.3
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 1.4e-35 154.1 201 47.8
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 1.5e-34 150.6 222 51.4
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 1.3e-33 147.5 179 50.3
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 3.7e-33 146.0 186 50.5
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 1.1e-32 144.4 182 48.9
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 5.4e-32 142.1 200 47.5
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 2.7e-31 139.8 180 48.3
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.7e-31 139.8 206 44.7
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 4.6e-31 139.0 180 48.3
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 5.9e-31 138.7 185 48.1
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 1.7e-30 137.1 180 50.6
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 2.3e-30 136.7 184 48.9
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 2.3e-30 136.7 184 46.2
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 2.3e-30 136.7 184 46.2
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 6.6e-30 135.2 180 50.0
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 6.6e-30 135.2 187 49.2
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 8.6e-30 134.8 184 50.0
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 8.6e-30 134.8 208 45.7
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.5e-29 134.0 198 47.0
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 2.5e-29 133.3 180 48.3
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 2.5e-29 133.3 177 49.7
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 2.5e-29 133.3 173 47.4
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 3.3e-29 132.9 160 55.6
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 3.3e-29 132.9 186 48.4
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 3.3e-29 132.9 188 49.5
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 5.6e-29 132.1 182 47.3
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 7.3e-29 131.7 177 50.8
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.2e-28 131.0 185 45.9
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 1.2e-28 131.0 185 50.3
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 1.6e-28 130.6 188 47.9
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 2.1e-28 130.2 192 45.8
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 2.8e-28 129.8 186 43.0
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 4.7e-28 129.0 189 46.0
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 4.7e-28 129.0 177 46.3
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 6.2e-28 128.6 181 47.0
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 8.0e-28 128.3 194 43.8
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 8.0e-28 128.3 183 47.0
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.4e-27 127.5 177 46.3
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 5.2e-27 125.6 170 45.3
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 8.9e-27 124.8 182 48.4
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 1.2e-26 124.4 181 46.4
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 1.2e-26 124.4 185 44.3
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 1.5e-26 124.0 188 44.7
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 2.0e-26 123.6 229 43.2
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 2.6e-26 123.2 182 44.0
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.6e-26 123.2 185 47.0
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 4.4e-26 122.5 188 44.1
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 5.8e-26 122.1 180 43.9
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.3e-25 120.9 175 44.6
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 2.2e-25 120.2 185 45.9
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 2.2e-25 120.2 177 44.6
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 2.9e-25 119.8 188 43.6
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 3.7e-25 119.4 212 39.2
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 4.9e-25 119.0 191 43.5
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 8.3e-25 118.2 186 42.5
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 8.3e-25 118.2 175 45.1
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 1.1e-24 117.9 193 41.5
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 4.1e-24 115.9 189 43.4
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 9.2e-24 114.8 192 42.2
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.6e-23 114.0 184 40.8
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 1.6e-23 114.0 191 41.4
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 1.6e-23 114.0 175 42.9
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 2.0e-23 113.6 177 43.5
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 2.0e-23 113.6 177 43.5
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 2.0e-23 113.6 191 40.3
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 2.7e-23 113.2 175 42.3
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 3.5e-23 112.8 177 42.9
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 4.6e-23 112.5 177 41.8
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 4.6e-23 112.5 177 44.1
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 6.0e-23 112.1 182 40.7
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 6.0e-23 112.1 185 41.6
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 1.0e-22 111.3 177 42.9
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 1.0e-22 111.3 177 42.9
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 1.0e-22 111.3 180 42.8
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 1.0e-22 111.3 180 41.7
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.3e-22 110.9 178 42.1
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 2.3e-22 110.2 162 48.1
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 3.0e-22 109.8 178 41.6
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 3.0e-22 109.8 180 42.2
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 3.0e-22 109.8 180 42.2
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 3.9e-22 109.4 183 41.0
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 3.9e-22 109.4 183 41.0
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 3.9e-22 109.4 180 42.2
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 6.6e-22 108.6 175 44.0
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 6.6e-22 108.6 185 41.1
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 8.6e-22 108.2 179 41.9
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 1.1e-21 107.8 185 41.1
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 1.1e-21 107.8 179 41.9
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 1.1e-21 107.8 179 41.9
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 1.5e-21 107.5 180 42.8
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.9e-21 107.1 186 41.4
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.3e-21 106.3 175 43.4
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 3.3e-21 106.3 175 43.4
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 3.3e-21 106.3 160 49.4
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 4.3e-21 105.9 192 39.6
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 7.3e-21 105.1 174 44.3
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 7.3e-21 105.1 182 39.0
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 1.2e-20 104.4 180 39.4
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 1.6e-20 104.0 176 41.5
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 2.1e-20 103.6 165 43.6
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 4.7e-20 102.4 179 36.3
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 6.2e-20 102.1 175 38.9
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 8.1e-20 101.7 165 44.2
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 8.1e-20 101.7 184 38.0
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.1e-19 101.3 166 44.0
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 6.8e-19 98.6 164 42.7
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 6.8e-19 98.6 185 40.0
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 2.0e-18 97.1 158 42.4
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 3.4e-18 96.3 175 40.6
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 5.8e-18 95.5 148 45.9
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 5.8e-18 95.5 158 41.1
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 7.5e-18 95.1 176 43.8
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 2.2e-17 93.6 196 37.8
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 2.2e-17 93.6 173 38.7
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 2.4e-16 90.1 169 40.2
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 2.4e-16 90.1 174 41.4
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 3.2e-16 89.7 177 36.2
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 3.5e-15 86.3 169 39.1
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.3e-14 84.3 173 35.3
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 3.0e-14 83.2 91 57.1
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 3.0e-14 83.2 181 33.7
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 3.9e-14 82.8 174 35.1
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 3.9e-14 82.8 179 36.3
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 8.6e-14 81.6 98 43.9
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 1.1e-13 81.3 174 35.6
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 2.5e-13 80.1 174 35.1
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 3.3e-13 79.7 180 34.4
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 7.3e-13 78.6 177 35.0
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 1.2e-12 77.8 174 32.2
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 3.6e-12 76.3 174 33.9
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 3.6e-12 76.3 174 33.9
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 8.1e-12 75.1 174 33.3
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 8.1e-12 75.1 174 33.3
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 1.4e-11 74.3 185 31.4
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 1.8e-11 73.9 186 32.8
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 3.1e-11 73.2 174 32.2
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 4.0e-11 72.8 174 32.8
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 3.4e-10 69.7 174 33.9
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 5.8e-10 68.9 49 69.4
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 7.6e-10 68.6 143 41.3
unitig_37.g12687 Utricularia gibba HOM05D004507 ORTHO05D004874 2.2e-09 67.0 88 48.9
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 2.2e-09 67.0 181 31.5
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 1.9e-08 63.9 63 54.0
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 2.1e-07 60.5 151 32.5
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 2.7e-07 60.1 184 31.5
SHI24759 Sapria himalayana HOM05D016562 ORTHO05D004874 6.0e-07 58.9 41 73.2
SMO144G0179 Selaginella moellendorffii HOM05D026704 ORTHO05D030102 1.3e-06 57.8 170 31.2
Zm00001eb192600 Zea mays HOM05D004507 ORTHO05D004874 1.7e-06 57.4 190 31.1
SEGI_10463 Sequoiadendron giganteum HOM05D058585 ORTHO05D050936 3.9e-06 56.2 196 27.0
Zm00001eb178020 Zea mays HOM05D004507 ORTHO05D004874 3.9e-06 56.2 170 27.6


User provided reference genes

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