Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1960 Avicennia marina HOM05D006116 ORTHO05D007795 4.8e-230 800.8 408 100.0
CSS0034154 Camellia sinensis var. sinensis HOM05D006116 ORTHO05D007795 2.4e-157 559.3 426 66.9
Oeu020145.1 Olea europaea HOM05D006116 ORTHO05D007795 3.2e-157 558.9 441 66.0
CSS0043999 Camellia sinensis var. sinensis HOM05D006116 ORTHO05D007795 7.8e-156 554.3 448 64.3
vmacro00376 Vaccinium macrocarpon HOM05D006116 ORTHO05D007795 1.1e-154 550.4 443 63.4
Hma1.2p1_0414F.1_g147510 Hydrangea macrophylla HOM05D006116 ORTHO05D007795 3.3e-154 548.9 435 66.2
Actinidia03408 Actinidia chinensis HOM05D006116 ORTHO05D007795 4.3e-154 548.5 436 65.8
Nitab4.5_0006135g0020 Nicotiana tabacum HOM05D006116 ORTHO05D007795 1.8e-152 543.1 432 63.7
Rhsim11G0056500 Rhododendron simsii HOM05D006116 ORTHO05D007795 1.8e-152 543.1 445 63.4
GSVIVG01013271001 Vitis vinifera HOM05D006116 ORTHO05D007795 6.9e-152 541.2 447 65.5
PGSC0003DMG400001856 Solanum tuberosum HOM05D006116 ORTHO05D007795 2.6e-151 539.3 432 63.4
Sopen08g026090 Solanum pennellii HOM05D006116 ORTHO05D007795 3.8e-150 535.4 428 63.3
CAN.G1445.8 Capsicum annuum HOM05D006116 ORTHO05D007795 4.9e-150 535.0 432 62.3
Duzib205G0680 Durio zibethinus HOM05D006116 ORTHO05D007795 1.9e-149 533.1 439 66.7
Solyc08g077510.4 Solanum lycopersicum HOM05D006116 ORTHO05D007795 1.9e-149 533.1 428 63.1
COL.COLO4_06703 Corchorus olitorius HOM05D006116 ORTHO05D007795 5.4e-149 531.6 452 62.6
HanXRQChr03g0087311 Helianthus annuus HOM05D006116 ORTHO05D007795 5.4e-149 531.6 426 64.1
Nitab4.5_0001255g0040 Nicotiana tabacum HOM05D006116 ORTHO05D007795 5.4e-149 531.6 443 61.6
ECA240G2524 Erigeron canadensis HOM05D006116 ORTHO05D007795 7.1e-149 531.2 425 63.3
ClCG10G002040 Citrullus lanatus HOM05D006116 ORTHO05D007795 1.3e-147 526.9 429 63.4
Cc08_g01540 Coffea canephora HOM05D006116 ORTHO05D007795 3.0e-147 525.8 445 61.3
CsaV3_3G002130 Cucumis sativus L. HOM05D006116 ORTHO05D007795 3.0e-147 525.8 431 62.6
Prupe.5G050800 Prunus persica HOM05D006116 ORTHO05D007795 3.0e-147 525.8 441 62.4
MELO3C013885.2 Cucumis melo HOM05D006116 ORTHO05D007795 6.7e-147 524.6 431 62.4
Thecc.03G237000 Theobroma cacao HOM05D006116 ORTHO05D007795 2.5e-146 522.7 442 64.7
Migut.E00901 Erythranthe guttata HOM05D006116 ORTHO05D007795 9.6e-146 520.8 426 66.2
Potri.003G085600 Populus trichocarpa HOM05D006116 ORTHO05D007795 1.3e-145 520.4 434 65.4
unitig_21.g20374 Utricularia gibba HOM05D006116 ORTHO05D007795 1.3e-145 520.4 411 65.0
MD04G1057000 Malus domestica HOM05D006116 ORTHO05D007795 4.8e-145 518.5 441 61.2
Nn1g00701 Nelumbo nucifera HOM05D006116 ORTHO05D007795 8.1e-145 517.7 444 66.0
Ciclev10020221m.g Citrus clementina HOM05D006116 ORTHO05D007795 2.4e-144 516.2 437 60.9
FAN18G3779 Fragaria x ananassa HOM05D006116 ORTHO05D007795 3.1e-144 515.8 437 60.4
CiPaw.11G085600 Carya illinoinensis HOM05D006116 ORTHO05D007795 4.0e-144 515.4 442 64.0
PGR042G3339 Punica granatum HOM05D006116 ORTHO05D007795 4.0e-144 515.4 457 58.9
QL12p007972 Quercus lobata HOM05D006116 ORTHO05D007795 1.2e-143 513.8 457 61.9
THA.LOC104813328 Tarenaya hassleriana HOM05D006116 ORTHO05D007795 2.6e-143 512.7 426 61.3
FvH4_5g20810 Fragaria vesca HOM05D006116 ORTHO05D007795 3.4e-143 512.3 437 60.2
TWI60G0034 Tripterygium wilfordii HOM05D006116 ORTHO05D007795 1.7e-142 510.0 435 65.3
Peaxi162Scf00084g00117 Petunia axillaris HOM05D006116 ORTHO05D007795 2.2e-142 509.6 433 61.4
FAN08G3374 Fragaria x ananassa HOM05D006116 ORTHO05D007795 2.9e-142 509.2 438 59.4
SGA_v2.0_scaffold20G09247 Striga asiatica HOM05D006116 ORTHO05D007795 8.4e-142 507.7 478 57.3
DCAR_008310 Daucus carota HOM05D006116 ORTHO05D007795 1.4e-141 506.9 445 63.1
Glyma.17G150200 Glycine max HOM05D006116 ORTHO05D007795 2.5e-141 506.1 408 62.5
FAN04G0705 Fragaria x ananassa HOM05D006116 ORTHO05D007795 9.3e-141 504.2 435 59.8
Gorai.008G230000 Gossypium raimondii HOM05D006116 ORTHO05D007795 1.2e-140 503.8 447 60.2
Lalb_Chr05g0220761 Lupinus albus HOM05D006116 ORTHO05D007795 2.7e-140 502.7 420 60.5
RcHm_v2.0_Chr7g0207741 Rosa chinensis HOM05D006116 ORTHO05D007795 4.6e-140 501.9 440 62.0
Ca_22031_v3 Cicer arietinum L. HOM05D006116 ORTHO05D007795 1.8e-139 500.0 436 60.3
CANSAT21G1244 Cannabis sativa HOM05D006116 ORTHO05D007795 3.9e-139 498.8 463 60.7
Gohir.A12G211900 Gossypium hirsutum HOM05D006116 ORTHO05D007795 5.1e-139 498.4 445 59.6
Medtr4g099100 Medicago truncatula HOM05D006116 ORTHO05D007795 9.6e-138 494.2 445 58.2
Aqoxy7G00869 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 1.3e-137 493.8 430 61.2
arahy.Tifrunner.gnm1.ann1.F87Z6X Arachis hypogaea HOM05D006116 ORTHO05D007795 3.7e-137 492.3 449 57.0
Phvul.003G227000 Phaseolus vulgaris HOM05D006116 ORTHO05D007795 8.2e-137 491.1 437 58.1
arahy.Tifrunner.gnm1.ann1.L13TYF Arachis hypogaea HOM05D006116 ORTHO05D007795 1.1e-136 490.7 449 56.8
VMungo0251G0386 Vigna mungo HOM05D006116 ORTHO05D007795 1.1e-136 490.7 453 59.2
Lj4g0012718 Lotus japonicus HOM05D006116 ORTHO05D007795 1.4e-136 490.3 431 58.5
BolC7t45369H Brassica oleracea HOM05D006116 ORTHO05D007795 2.4e-136 489.6 432 58.8
Gohir.D12G214400 Gossypium hirsutum HOM05D006116 ORTHO05D007795 4.0e-136 488.8 298 77.5
Lj8A287G22 Lonicera japonica HOM05D006116 ORTHO05D007795 4.0e-136 488.8 377 64.7
C07p48610 Brassica napus HOM05D006116 ORTHO05D007795 1.5e-135 486.9 432 58.6
Lsat_1_v5_gn_6_88480 Lactuca sativa HOM05D006116 ORTHO05D007795 2.0e-135 486.5 435 60.0
Os04g0542900 Oryza sativa ssp. japonica HOM05D006116 ORTHO05D007795 3.4e-135 485.7 468 56.2
TPR.G11192 Trifolium pratense HOM05D006116 ORTHO05D007795 3.4e-135 485.7 456 55.9
A03p50320 Brassica napus HOM05D006116 ORTHO05D007795 4.5e-135 485.3 432 61.8
CARHR223700 Cardamine hirsuta HOM05D006116 ORTHO05D007795 2.9e-134 482.6 434 62.0
BraA03t14121Z Brassica rapa HOM05D006116 ORTHO05D007795 3.8e-134 482.3 432 61.6
Eucgr.E00329 Eucalyptus grandis HOM05D006116 ORTHO05D007795 1.4e-133 480.3 454 57.5
Sed0023369 Sechium edule HOM05D006116 ORTHO05D007795 3.2e-133 479.2 432 62.7
AL7G37600 Arabidopsis lyrata HOM05D006116 ORTHO05D007795 7.9e-132 474.6 437 61.1
Sp7g17070 Schrenkiella parvula HOM05D006116 ORTHO05D007795 5.1e-131 471.9 426 62.0
Aa31LG2G13210 Aethionema arabicum HOM05D006116 ORTHO05D007795 2.5e-130 469.5 395 61.0
Ah.12g053810 Amaranthus hybridus HOM05D006116 ORTHO05D007795 1.6e-129 466.8 426 57.0
PSO732G0356 Papaver somniferum HOM05D006116 ORTHO05D007795 1.6e-129 466.8 445 55.5
Sc07g0009020 Simmondsia chinensis HOM05D006116 ORTHO05D007795 3.7e-129 465.7 459 55.1
Carub.0007s2428 Capsella rubella HOM05D006116 ORTHO05D007795 6.3e-129 464.9 299 71.9
ClCG00G004790 Citrullus lanatus HOM05D006116 ORTHO05D007795 1.1e-128 464.2 429 58.3
Manes.17G019700 Manihot esculenta HOM05D006116 ORTHO05D007795 1.1e-128 464.2 440 56.6
Thhalv10025290m.g Eutrema salsugineum HOM05D006116 ORTHO05D007795 1.4e-128 463.8 433 59.8
Hund14464 Selenicereus undatus HOM05D006116 ORTHO05D007795 2.4e-128 463.0 445 54.6
ATR0829G115 Amborella trichopoda HOM05D006116 ORTHO05D007795 5.3e-128 461.8 438 57.3
Lalb_Chr09g0329681 Lupinus albus HOM05D006116 ORTHO05D007795 3.4e-127 459.1 328 65.2
Zm00001eb075030 Zea mays HOM05D006116 ORTHO05D007795 7.7e-127 458.0 473 51.6
PSO675G1792 Papaver somniferum HOM05D006116 ORTHO05D007795 1.3e-126 457.2 422 55.9
AUR62007200 Chenopodium quinoa HOM05D006116 ORTHO05D007795 6.5e-126 454.9 299 70.2
AUR62018802 Chenopodium quinoa HOM05D006116 ORTHO05D007795 4.2e-125 452.2 394 59.4
EL10Ac5g12218 Beta vulgaris HOM05D006116 ORTHO05D007795 1.8e-123 446.8 505 50.1
HPP92_020688 Vanilla planifolia HOM05D006116 ORTHO05D007795 5.5e-117 425.2 441 54.4
SEGI_40490 Sequoiadendron giganteum HOM05D006116 ORTHO05D007795 2.8e-113 412.9 292 67.5
TAR375G0725 Trochodendron aralioides HOM05D006116 ORTHO05D007795 3.5e-111 406.0 385 61.8
AagrBONN_evm.TU.Sc2ySwM_368.518 Anthoceros agrestis HOM05D006116 ORTHO05D007795 4.7e-108 395.6 409 49.6
CiPaw.12G058000 Carya illinoinensis HOM05D006116 ORTHO05D007795 1.1e-106 391.0 232 78.0
Migut.E00812 Erythranthe guttata HOM05D006116 ORTHO05D007795 7.4e-106 388.3 218 83.5
Pp3c14_16100 Physcomitrium patens HOM05D006116 ORTHO05D007795 3.5e-103 379.4 375 52.8
Pp3c14_16101 Physcomitrium patens HOM05D006116 ORTHO05D007795 3.5e-103 379.4 375 52.8
SMO356G0030 Selaginella moellendorffii HOM05D006116 ORTHO05D007795 1.3e-102 377.5 301 59.8
TAR375G0708 Trochodendron aralioides HOM05D006116 ORTHO05D007795 1.3e-102 377.5 369 61.0
Mapoly0141s0023 Marchantia polymorpha HOM05D006116 ORTHO05D007795 2.2e-102 376.7 394 51.5
Pp3c2_10960 Physcomitrium patens HOM05D006116 ORTHO05D007795 2.9e-102 376.3 297 64.0
Zm00001eb313880 Zea mays HOM05D006116 ORTHO05D007795 4.4e-98 362.5 265 65.3
Psat4g077320 Pisum sativum HOM05D006116 ORTHO05D007795 9.7e-98 361.3 345 56.2
BcaC06g33529 Brassica carinata HOM05D006116 ORTHO05D007795 3.6e-92 342.8 348 57.5
Zm00001eb091650 Zea mays HOM05D006116 ORTHO05D007795 6.1e-92 342.0 303 55.8
Haze_08334 Corylus avellana HOM05D006116 ORTHO05D007795 1.4e-88 330.9 346 56.4
FAN13G0371 Fragaria x ananassa HOM05D006116 ORTHO05D007795 3.0e-83 313.2 335 51.9
Zm00001eb319310 Zea mays HOM05D006116 ORTHO05D007795 6.8e-83 312.0 201 72.1
CBR_g27781 Chara braunii HOM05D006116 ORTHO05D007795 1.0e-70 271.6 268 50.4
Zm00001eb129530 Zea mays HOM05D006116 ORTHO05D007795 4.0e-67 259.6 202 61.4
Zm00001eb391960 Zea mays HOM05D006116 ORTHO05D007795 4.0e-67 259.6 202 61.4
Cre14.g631900 Chlamydomonas reinhardtii HOM05D006116 ORTHO05D007795 2.9e-65 253.4 277 42.2
Dinv28896 Davidia involucrata HOM05D006116 ORTHO05D007795 2.2e-57 227.3 198 60.6
Atru.chr9.1147 Acer truncatum HOM05D006116 ORTHO05D007795 1.5e-53 214.5 118 79.7
Zm00001eb268110 Zea mays HOM05D006116 ORTHO05D007795 1.4e-40 171.4 194 47.4
PSO732G0385 Papaver somniferum HOM05D006116 ORTHO05D007795 1.4e-35 154.8 254 38.6
Zm00001eb276710 Zea mays HOM05D006116 ORTHO05D007795 4.0e-35 153.3 128 57.0
Ca_20974_v3 Cicer arietinum L. HOM05D006116 ORTHO05D007795 2.4e-32 144.1 107 63.6
EL10Ac5g12217 Beta vulgaris HOM05D006116 ORTHO05D007795 1.6e-28 131.3 78 71.8
TAR375G0859 Trochodendron aralioides HOM05D006116 ORTHO05D007795 2.0e-26 124.4 68 85.3
Lsat_1_v5_gn_7_9401 Lactuca sativa HOM05D006116 ORTHO05D000290 9.3e-24 115.5 82 62.2
DCAR_005654 Daucus carota HOM05D006116 ORTHO05D007795 3.5e-23 113.6 68 75.0
CAN.G507.3 Capsicum annuum HOM05D006116 ORTHO05D007795 1.5e-21 108.2 76 64.5
CDE11G0087 Ceratophyllum demersum HOM05D006116 ORTHO05D007795 2.5e-16 90.9 53 81.1
Aqoxy6G01690 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 4.5e-10 70.1 123 31.7
TAR375G0706 Trochodendron aralioides HOM05D006116 ORTHO05D009946 2.5e-08 64.3 69 47.8
Aqoxy7G03532 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 7.9e-07 59.3 59 42.4


User provided reference genes

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