Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 6.3e-182 640.6 309 100.0
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 1.1e-120 437.2 303 70.6
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 4.0e-120 435.3 303 71.3
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 4.5e-111 405.2 295 68.5
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 1.9e-109 399.8 267 72.3
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 3.2e-109 399.1 275 66.9
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 8.7e-107 391.0 267 66.7
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 1.4e-104 383.6 265 68.7
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 3.1e-104 382.5 303 62.4
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 2.6e-103 379.4 267 64.0
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.7e-102 376.7 267 65.5
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.5e-101 372.9 271 64.9
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 2.5e-101 372.9 270 65.6
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 7.1e-101 371.3 294 62.2
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 3.5e-100 369.0 240 72.5
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 2.1e-97 359.8 279 60.9
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 3.7e-97 359.0 284 61.3
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 1.5e-95 353.6 292 59.2
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 2.2e-94 349.7 300 58.7
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 1.1e-93 347.4 275 60.4
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 2.5e-93 346.3 270 61.9
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 5.5e-93 345.1 279 60.6
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 6.1e-92 341.7 276 60.1
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 3.0e-91 339.3 270 58.5
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 3.9e-91 339.0 295 58.6
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 6.7e-91 338.2 361 50.1
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 9.7e-90 334.3 264 61.4
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 1.6e-89 333.6 271 60.9
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 2.2e-89 333.2 274 59.9
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 3.7e-89 332.4 276 58.3
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 6.3e-89 331.6 272 59.2
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 1.1e-88 330.9 275 57.8
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 4.1e-88 328.9 325 54.5
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 1.5e-87 327.0 287 56.4
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 5.9e-87 325.1 266 59.4
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 7.7e-87 324.7 275 56.4
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 1.0e-86 324.3 268 57.8
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 1.0e-86 324.3 288 54.5
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 1.0e-86 324.3 304 52.6
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 1.7e-86 323.6 318 55.0
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 2.2e-86 323.2 275 57.5
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 2.2e-86 323.2 257 63.8
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 5.0e-86 322.0 277 56.7
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 8.5e-86 321.2 298 54.7
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 5.5e-85 318.5 304 52.6
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 9.4e-85 317.8 266 58.3
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 1.2e-84 317.4 270 57.8
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 1.2e-84 317.4 267 56.9
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 1.6e-84 317.0 278 57.9
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 2.7e-84 316.2 276 55.8
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 3.6e-84 315.8 264 59.5
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 3.0e-83 312.8 264 58.0
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 3.0e-83 312.8 264 58.0
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 6.7e-83 311.6 315 52.7
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 6.7e-83 311.6 276 53.6
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 8.8e-83 311.2 262 58.4
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 8.8e-83 311.2 289 52.6
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 1.1e-82 310.8 267 58.8
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 1.5e-82 310.5 267 58.1
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 1.5e-82 310.5 267 58.1
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 2.0e-82 310.1 295 53.9
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 5.7e-82 308.5 266 58.3
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 7.4e-82 308.1 270 57.8
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 9.7e-82 307.8 308 51.0
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 2.2e-81 306.6 264 56.4
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 2.2e-81 306.6 264 56.4
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 4.8e-81 305.4 284 52.5
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.1e-80 304.3 271 56.8
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 1.1e-80 304.3 282 54.3
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 1.4e-80 303.9 280 54.3
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 1.8e-80 303.5 270 57.8
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 1.8e-80 303.5 269 56.9
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 2.4e-80 303.1 264 56.1
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 3.1e-80 302.8 269 56.9
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 4.1e-80 302.4 299 50.5
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 6.9e-80 301.6 266 54.9
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 1.2e-79 300.8 251 57.8
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 1.2e-79 300.8 265 55.5
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 2.0e-79 300.1 283 52.3
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 3.4e-79 299.3 317 50.2
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 3.4e-79 299.3 273 53.1
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 7.7e-79 298.1 316 48.7
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 7.7e-79 298.1 316 48.7
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 1.0e-78 297.7 263 55.5
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 2.2e-78 296.6 275 53.8
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 1.9e-77 293.5 247 59.1
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 2.5e-77 293.1 269 52.8
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 1.4e-75 287.3 283 52.7
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 6.7e-75 285.0 265 54.3
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 2.0e-74 283.5 279 51.3
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 1.1e-72 277.7 281 50.9
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 2.0e-71 273.5 289 47.1
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 4.5e-71 272.3 289 46.7
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 2.9e-70 269.6 288 48.6
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 2.5e-69 266.5 296 48.0
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 2.5e-69 266.5 255 51.8
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 5.5e-69 265.4 295 47.8
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.8e-67 260.4 208 59.1
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 6.7e-67 258.5 270 49.3
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 6.7e-67 258.5 218 58.7
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 8.2e-65 251.5 227 57.7
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 4.1e-64 249.2 273 43.2
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 1.6e-63 247.3 250 50.8
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 4.5e-63 245.7 272 48.5
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 1.4e-59 234.2 305 40.0
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 3.0e-59 233.0 276 42.4
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 5.2e-59 232.3 338 37.9
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 8.8e-59 231.5 254 44.9
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 8.8e-59 231.5 280 43.6
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 3.7e-57 226.1 282 42.2
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 1.1e-53 214.5 196 53.6
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.8e-51 207.2 220 48.6
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.8e-51 207.2 220 48.6
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 5.7e-50 202.2 280 36.8
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.4e-48 197.6 220 48.6
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.8e-48 197.2 220 48.6
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.8e-46 189.5 226 46.5
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 6.8e-43 178.7 192 45.3
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 1.5e-42 177.6 250 38.0
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 1.7e-41 174.1 210 45.2
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.2e-39 167.9 110 67.3
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 2.0e-39 167.2 294 34.0
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 1.3e-38 164.5 430 28.8
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 1.5e-37 161.0 173 46.8
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 5.8e-34 149.1 134 55.2
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 1.1e-32 144.8 163 47.9
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 3.5e-31 139.8 381 28.6
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 2.8e-28 130.2 173 46.2
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 3.1e-27 126.7 316 28.5
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 1.7e-25 120.9 76 67.1
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 6.4e-25 119.0 162 48.8
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 5.4e-24 115.9 141 43.3
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 9.2e-24 115.2 63 79.4
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 1.3e-22 111.3 146 38.4
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 2.3e-19 100.5 146 34.9
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 1.5e-18 97.8 53 75.5
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 5.8e-18 95.9 57 71.9
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 7.6e-18 95.5 57 75.4
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 5.4e-16 89.4 104 46.2
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 1.6e-15 87.8 137 38.7
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 7.3e-13 79.0 174 30.5
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 1.8e-11 74.3 195 28.2
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 9.3e-08 62.0 38 63.2
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 9.3e-08 62.0 38 63.2
MBI19_g24592_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 7.8e-07 58.9 36 58.3
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 6.6e-06 55.8 29 79.3


User provided reference genes

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