Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 1.9e-262 908.7 461 100.0
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 5.7e-179 631.3 466 67.6
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 1.4e-177 626.7 463 67.2
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 2.2e-175 619.4 461 66.6
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 6.1e-173 611.3 466 65.5
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 3.1e-169 599.0 460 65.4
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 3.1e-169 599.0 490 64.3
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 1.3e-167 593.6 458 65.7
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 2.9e-167 592.4 461 64.9
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 3.8e-167 592.0 449 65.3
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 1.5e-166 590.1 463 62.9
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 5.5e-166 588.2 461 64.4
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.7e-162 576.6 461 63.6
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 1.7e-162 576.6 456 63.4
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 4.9e-162 575.1 461 62.7
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 4.9e-162 575.1 456 63.2
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 4.7e-157 558.5 494 57.7
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 6.1e-157 558.1 459 60.1
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 8.0e-157 557.8 461 61.0
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 5.2e-156 555.1 460 60.0
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 1.2e-155 553.9 460 60.9
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 9.8e-155 550.8 466 58.8
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 8.3e-154 547.7 460 60.7
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 2.4e-153 546.2 465 58.5
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 3.2e-153 545.8 432 63.0
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 4.1e-153 545.4 464 58.6
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 2.0e-152 543.1 460 58.5
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 3.5e-152 542.3 458 59.6
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 1.0e-151 540.8 466 57.7
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 6.6e-151 538.1 457 60.4
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 5.6e-150 535.0 461 58.4
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 9.5e-150 534.3 512 54.7
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 2.6e-147 526.2 464 56.7
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 2.6e-147 526.2 460 57.2
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 4.4e-147 525.4 460 58.3
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 1.3e-146 523.9 461 56.8
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 1.7e-146 523.5 462 56.3
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 3.7e-146 522.3 465 56.3
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 1.1e-145 520.8 466 56.0
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 4.6e-144 515.4 463 57.0
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 1.0e-143 514.2 468 57.5
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 1.0e-143 514.2 463 56.8
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 3.3e-142 509.2 463 56.4
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 4.3e-142 508.8 463 55.9
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 4.3e-142 508.8 463 55.9
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 1.2e-141 507.3 467 54.2
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 1.6e-141 506.9 446 58.1
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 6.2e-141 505.0 464 56.0
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 8.1e-141 504.6 464 56.2
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 3.1e-140 502.7 464 54.7
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 5.2e-140 501.9 445 56.9
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 6.8e-140 501.5 464 53.2
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.2e-139 500.7 463 54.9
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 1.5e-139 500.4 486 54.1
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 2.0e-139 500.0 464 54.1
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 7.5e-139 498.0 464 54.3
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 1.3e-138 497.3 461 52.9
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 7.1e-137 491.5 464 53.4
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 1.2e-136 490.7 467 54.2
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 4.6e-136 488.8 458 53.1
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 7.8e-136 488.0 459 52.3
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 7.8e-136 488.0 464 54.1
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 7.8e-136 488.0 463 53.8
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 1.3e-135 487.3 460 52.0
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 3.0e-135 486.1 466 54.3
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 8.6e-135 484.6 463 55.1
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 8.6e-135 484.6 461 52.9
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.1e-134 484.2 456 54.4
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 1.5e-134 483.8 462 53.9
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 2.5e-134 483.0 455 52.7
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 3.3e-134 482.6 463 54.6
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.3e-134 482.3 464 54.3
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 7.3e-134 481.5 461 51.4
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 9.5e-134 481.1 461 51.4
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 3.6e-133 479.2 470 52.6
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 4.7e-133 478.8 461 51.2
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 1.4e-132 477.2 459 51.6
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 1.8e-132 476.9 462 51.5
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 4.0e-132 475.7 461 50.8
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 5.2e-132 475.3 462 51.3
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 6.8e-132 474.9 461 51.4
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 9.9e-131 471.1 459 51.2
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 1.3e-130 470.7 459 51.2
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 1.7e-130 470.3 468 52.8
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 1.7e-130 470.3 461 53.6
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 2.2e-130 469.9 457 51.9
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 2.9e-130 469.5 461 51.0
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 3.8e-130 469.2 463 53.1
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 3.2e-129 466.1 457 51.6
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 1.6e-128 463.8 464 51.5
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 4.6e-128 462.2 422 57.3
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.3e-127 460.7 463 52.1
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 1.1e-126 457.6 464 52.4
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.1e-124 451.1 429 53.8
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.4e-124 450.7 429 54.1
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 4.2e-121 439.1 463 49.9
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 2.3e-119 433.3 456 48.2
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 5.3e-116 422.2 461 48.6
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 7.1e-113 411.8 419 49.6
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 6.0e-112 408.7 461 45.8
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 1.5e-110 404.1 523 48.4
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 9.6e-110 401.4 443 47.4
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 8.1e-109 398.3 460 46.3
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 9.0e-108 394.8 445 46.5
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 2.6e-107 393.3 419 49.9
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 1.1e-89 334.7 295 55.3
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 3.7e-85 319.7 427 40.5
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.0e-82 311.6 365 44.7
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 1.0e-82 311.6 365 44.7
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 1.7e-82 310.8 492 38.4
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 3.6e-80 303.1 277 54.9
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 8.8e-79 298.5 321 53.6
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 1.0e-74 285.0 464 35.1
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 2.2e-69 267.3 468 37.8
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 1.6e-59 234.6 498 31.7
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 1.0e-58 231.9 510 30.4
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 7.2e-49 199.1 355 37.5
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 7.5e-46 189.1 192 50.0
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 7.0e-44 182.6 469 28.1
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 9.5e-41 172.2 182 48.4
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 4.7e-40 169.9 182 47.3
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 3.5e-35 153.7 352 29.8
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.4e-31 141.7 126 50.0
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.4e-31 141.7 126 50.0
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 3.1e-31 140.6 127 53.5
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 5.2e-31 139.8 229 34.5
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.0e-30 137.9 123 50.4
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 6.4e-29 132.9 320 29.4
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 3.2e-28 130.6 109 55.0
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.6e-27 128.3 105 56.2
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 7.8e-27 125.9 205 42.4
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 3.0e-26 124.0 447 21.7
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 9.5e-17 92.4 118 40.7
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 2.8e-16 90.9 73 60.3
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.4e-15 88.6 168 33.9
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 1.7e-13 81.6 108 42.6
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 1.4e-12 78.6 87 48.3
Cc06_g10970 Coffea canephora HOM05D005294 ORTHO05D038989 3.0e-10 70.9 42 73.8
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 6.6e-10 69.7 72 47.2


User provided reference genes

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