Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19395 Avicennia marina HOM05D003380 ORTHO05D004232 8.9e-63 243.4 122 100.0
SalBow6G4635 Salvia bowleyana HOM05D003380 ORTHO05D004232 1.4e-23 113.2 77 74.0
Lj6C279G2 Lonicera japonica HOM05D003380 ORTHO05D004232 4.0e-23 111.7 64 89.1
Lj6A275T63 Lonicera japonica HOM05D003380 ORTHO05D004232 5.3e-23 111.3 63 90.5
MSTRG.10467 Avicennia marina HOM05D003380 ORTHO05D004232 9.0e-23 110.5 63 88.9
CiPaw.08G021300 Carya illinoinensis HOM05D003380 ORTHO05D004232 9.0e-23 110.5 63 88.9
Actinidia02482 Actinidia chinensis HOM05D003380 ORTHO05D004232 1.2e-22 110.2 63 88.9
Lj4A319G22 Lonicera japonica HOM05D003380 ORTHO05D004232 1.2e-22 110.2 63 88.9
MD08G1124600 Malus domestica HOM05D003380 ORTHO05D004232 1.2e-22 110.2 63 88.9
MD13G1234400 Malus domestica HOM05D003380 ORTHO05D004232 1.2e-22 110.2 57 96.5
MD16G1239000 Malus domestica HOM05D003380 ORTHO05D004232 1.2e-22 110.2 57 96.5
Prupe.1G065200 Prunus persica HOM05D003380 ORTHO05D004232 1.2e-22 110.2 57 96.5
SGA_v2.0_scaffold21G09610 Striga asiatica HOM05D003380 ORTHO05D004232 1.2e-22 110.2 63 87.3
CiPaw.07G209900 Carya illinoinensis HOM05D003380 ORTHO05D004232 1.5e-22 109.8 63 87.3
Migut.J00835 Erythranthe guttata HOM05D003380 ORTHO05D004232 1.5e-22 109.8 59 91.5
Prupe.1G456200 Prunus persica HOM05D003380 ORTHO05D004232 1.5e-22 109.8 60 91.7
SGA_v2.0_scaffold450G51802 Striga asiatica HOM05D003380 ORTHO05D004232 1.5e-22 109.8 63 87.3
Dinv26471 Davidia involucrata HOM05D003380 ORTHO05D004232 2.0e-22 109.4 63 87.3
Rhsim01G0218400 Rhododendron simsii HOM05D003380 ORTHO05D004232 2.0e-22 109.4 63 88.9
CSS0000176 Camellia sinensis var. sinensis HOM05D003380 ORTHO05D004232 2.6e-22 109.0 63 87.3
Dinv12605 Davidia involucrata HOM05D003380 ORTHO05D004232 2.6e-22 109.0 63 87.3
Migut.L01915 Erythranthe guttata HOM05D003380 ORTHO05D004232 2.6e-22 109.0 63 87.3
Ciclev10009349m.g Citrus clementina HOM05D003380 ORTHO05D004232 3.4e-22 108.6 63 87.3
HanXRQChr03g0081271 Helianthus annuus HOM05D003380 ORTHO05D004232 3.4e-22 108.6 60 86.7
Lsat_1_v5_gn_5_56460 Lactuca sativa HOM05D003380 ORTHO05D004232 3.4e-22 108.6 60 86.7
Oeu021030.1 Olea europaea HOM05D003380 ORTHO05D004232 3.4e-22 108.6 63 85.7
Oeu036948.2 Olea europaea HOM05D003380 ORTHO05D004232 3.4e-22 108.6 63 85.7
RhsimUnG0051400 Rhododendron simsii HOM05D003380 ORTHO05D004232 3.4e-22 108.6 66 84.8
Rhsim03G0268700 Rhododendron simsii HOM05D003380 ORTHO05D004232 4.4e-22 108.2 63 87.3
TAR383G1016 Trochodendron aralioides HOM05D003380 ORTHO05D004232 4.4e-22 108.2 57 93.0
Atru.chr7.2690 Acer truncatum HOM05D003380 ORTHO05D004232 5.8e-22 107.8 58 91.4
MD15G1103300 Malus domestica HOM05D003380 ORTHO05D004232 5.8e-22 107.8 63 87.3
arahy.Tifrunner.gnm1.ann1.21Q806 Arachis hypogaea HOM05D003380 ORTHO05D004232 7.6e-22 107.5 57 93.0
arahy.Tifrunner.gnm1.ann1.AGKE2S Arachis hypogaea HOM05D003380 ORTHO05D004232 7.6e-22 107.5 57 93.0
Ca_15639_v3 Cicer arietinum L. HOM05D003380 ORTHO05D004232 7.6e-22 107.5 57 93.0
DCAR_004564 Daucus carota HOM05D003380 ORTHO05D004232 7.6e-22 107.5 65 80.0
Cfa013309 Carpinus fangiana HOM05D003380 ORTHO05D004232 9.9e-22 107.1 57 93.0
Haze_21791 Corylus avellana HOM05D003380 ORTHO05D004232 9.9e-22 107.1 57 93.0
Lj1g0002632 Lotus japonicus HOM05D003380 ORTHO05D004232 9.9e-22 107.1 57 93.0
Lalb_Chr08g0243471 Lupinus albus HOM05D003380 ORTHO05D004232 9.9e-22 107.1 57 93.0
Lalb_Chr23g0269261 Lupinus albus HOM05D003380 ORTHO05D004232 9.9e-22 107.1 57 93.0
Medtr3g109210 Medicago truncatula HOM05D003380 ORTHO05D004232 9.9e-22 107.1 61 86.9
PSO170G5091 Papaver somniferum HOM05D003380 ORTHO05D004232 9.9e-22 107.1 57 93.0
PSO210G2204 Papaver somniferum HOM05D003380 ORTHO05D004232 9.9e-22 107.1 57 93.0
Psat5g024560 Pisum sativum HOM05D003380 ORTHO05D004232 9.9e-22 107.1 61 86.9
Hund19388 Selenicereus undatus HOM05D003380 ORTHO05D004232 9.9e-22 107.1 57 91.2
Atru.chr13.1615 Acer truncatum HOM05D003380 ORTHO05D004232 1.3e-21 106.7 57 91.2
Potri.018G145900 Populus trichocarpa HOM05D003380 ORTHO05D004232 1.7e-21 106.3 57 91.2
Sabra06G0058900 Salix brachista HOM05D003380 ORTHO05D004232 1.7e-21 106.3 57 91.2
Sc06g0001250 Simmondsia chinensis HOM05D003380 ORTHO05D004232 1.7e-21 106.3 63 84.1
TAR383G0138 Trochodendron aralioides HOM05D003380 ORTHO05D004232 1.7e-21 106.3 57 91.2
Atru.chr7.2666 Acer truncatum HOM05D003380 ORTHO05D004232 2.2e-21 105.9 58 89.7
Actinidia38523 Actinidia chinensis HOM05D003380 ORTHO05D004232 2.2e-21 105.9 63 82.5
Cfa010143 Carpinus fangiana HOM05D003380 ORTHO05D004232 2.2e-21 105.9 63 84.1
Haze_23534 Corylus avellana HOM05D004783 ORTHO05D005581 2.2e-21 105.9 63 84.1
Gohir.D05G068600 Gossypium hirsutum HOM05D003380 ORTHO05D004232 2.2e-21 105.9 57 91.2
Gorai.009G069600 Gossypium raimondii HOM05D003380 ORTHO05D004232 2.2e-21 105.9 57 91.2
Phvul.009G103400 Phaseolus vulgaris HOM05D003380 ORTHO05D004232 2.2e-21 105.9 57 91.2
Potri.006G077900 Populus trichocarpa HOM05D003380 ORTHO05D004232 2.2e-21 105.9 58 87.9
QL12p025844 Quercus lobata HOM05D003380 ORTHO05D004232 2.2e-21 105.9 63 84.1
Sed0024231 Sechium edule HOM05D003380 ORTHO05D004232 2.2e-21 105.9 57 91.2
THA.LOC104803586 Tarenaya hassleriana HOM05D003380 ORTHO05D004232 2.2e-21 105.9 57 91.2
ClCG08G012530 Citrullus lanatus HOM05D003380 ORTHO05D004232 2.9e-21 105.5 57 91.2
Glyma.04G077400 Glycine max HOM05D003380 ORTHO05D004232 2.9e-21 105.5 57 91.2
Glyma.06G078500 Glycine max HOM05D003380 ORTHO05D004232 2.9e-21 105.5 57 91.2
HanXRQChr03g0067311 Helianthus annuus HOM05D003380 ORTHO05D004232 2.9e-21 105.5 57 89.5
Hma1.2p1_0443F.1_g154000 Hydrangea macrophylla HOM05D003380 ORTHO05D004232 2.9e-21 105.5 57 89.5
Sabra18G0120300 Salix brachista HOM05D003380 ORTHO05D004232 2.9e-21 105.5 57 89.5
Sabra18G0127800 Salix brachista HOM05D003380 ORTHO05D004232 2.9e-21 105.5 57 89.5
Sed0022704 Sechium edule HOM05D003380 ORTHO05D004232 2.9e-21 105.5 57 91.2
TPR.G12492 Trifolium pratense HOM05D003380 ORTHO05D004232 2.9e-21 105.5 61 85.2
GSVIVG01032253001 Vitis vinifera HOM05D003380 ORTHO05D004232 2.9e-21 105.5 56 94.6
CANSAT25G3289 Cannabis sativa HOM05D003380 ORTHO05D004232 3.8e-21 105.1 57 91.2
MELO3C011172.2 Cucumis melo HOM05D003380 ORTHO05D004232 3.8e-21 105.1 57 91.2
CsaV3_2G031230 Cucumis sativus L. HOM05D003380 ORTHO05D004232 3.8e-21 105.1 57 91.2
Manes.03G001100 Manihot esculenta HOM05D003380 ORTHO05D004232 3.8e-21 105.1 57 89.5
Gohir.A13G181700 Gossypium hirsutum HOM05D003380 ORTHO05D004232 4.9e-21 104.8 57 89.5
Gohir.D13G185700 Gossypium hirsutum HOM05D003380 ORTHO05D004232 4.9e-21 104.8 57 89.5
Gorai.013G211700 Gossypium raimondii HOM05D003380 ORTHO05D004232 4.9e-21 104.8 57 89.5
Solyc07g016200.3 Solanum lycopersicum HOM05D003380 ORTHO05D004232 4.9e-21 104.8 63 84.1
Sopen07g005910 Solanum pennellii HOM05D003380 ORTHO05D004232 4.9e-21 104.8 63 84.1
PGSC0003DMG400009772 Solanum tuberosum HOM05D003380 ORTHO05D004232 4.9e-21 104.8 63 84.1
PGSC0003DMG400020027 Solanum tuberosum HOM05D003380 ORTHO05D004232 4.9e-21 104.8 63 84.1
TWI34G1105 Tripterygium wilfordii HOM05D003380 ORTHO05D004232 4.9e-21 104.8 57 89.5
CAN.G106.10 Capsicum annuum HOM05D003380 ORTHO05D004232 6.4e-21 104.4 63 82.5
COL.COLO4_18628 Corchorus olitorius HOM05D003380 ORTHO05D004232 6.4e-21 104.4 56 91.1
Eucgr.C02133 Eucalyptus grandis HOM05D003380 ORTHO05D004232 6.4e-21 104.4 57 89.5
Sopen05g027780 Solanum pennellii HOM05D003380 ORTHO05D004232 6.4e-21 104.4 65 80.0
Thecc.09G002600 Theobroma cacao HOM05D003380 ORTHO05D004232 6.4e-21 104.4 57 89.5
Aa31LG2G19070 Aethionema arabicum HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
AL7G20780 Arabidopsis lyrata HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
AT4G31300 Arabidopsis thaliana HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
BcaB03g12688 Brassica carinata HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
BcaC09g51907 Brassica carinata HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
BcaNung01533 Brassica carinata HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
BcaNung05317 Brassica carinata HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
A01p07000 Brassica napus HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
A03p60610 Brassica napus HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
A08p18700 Brassica napus HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
C01p07730 Brassica napus HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
BolC1t00756H Brassica oleracea HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
BolC3t21119H Brassica oleracea HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
BolC7t46306H Brassica oleracea HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
BraA01t00651Z Brassica rapa HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
BraA03t15102Z Brassica rapa HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
BraA08t33831Z Brassica rapa HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
Carub.0007s0926 Capsella rubella HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
CARHR239170 Cardamine hirsuta HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
Cc00_g00190 Coffea canephora HOM05D003380 ORTHO05D004232 8.4e-21 104.0 63 84.1
Dinv37493 Davidia involucrata HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
Thhalv10026126m.g Eutrema salsugineum HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
Sp7g29150 Schrenkiella parvula HOM05D003380 ORTHO05D004232 8.4e-21 104.0 57 89.5
PGSC0003DMG400013685 Solanum tuberosum HOM05D003380 ORTHO05D004232 8.4e-21 104.0 63 82.5
BcaC01g01103 Brassica carinata HOM05D003380 ORTHO05D004232 1.1e-20 103.6 57 87.7
C03p88100 Brassica napus HOM05D003380 ORTHO05D004232 1.1e-20 103.6 57 87.7
Peaxi162Scf00320g00122 Petunia axillaris HOM05D003380 ORTHO05D004232 1.1e-20 103.6 63 82.5
Aqoxy7G02672 Aquilegia oxysepala HOM05D003380 ORTHO05D004232 1.4e-20 103.2 57 87.7
CAN.G228.7 Capsicum annuum HOM05D003380 ORTHO05D004232 1.4e-20 103.2 59 86.4
FvH4_2g36480 Fragaria vesca HOM05D003380 ORTHO05D004232 1.4e-20 103.2 66 78.8
FAN20G0682 Fragaria x ananassa HOM05D003380 ORTHO05D004232 1.4e-20 103.2 66 78.8
Nn3g19887 Nelumbo nucifera HOM05D003380 ORTHO05D004232 1.4e-20 103.2 57 89.5
RcHm_v2.0_Chr6g0305401 Rosa chinensis HOM05D003380 ORTHO05D004232 1.4e-20 103.2 62 82.3
Duzib150G0262 Durio zibethinus HOM05D003380 ORTHO05D004232 1.9e-20 102.8 57 87.7
Gohir.A05G066200 Gossypium hirsutum HOM05D003380 ORTHO05D004232 1.9e-20 102.8 57 89.5
Nn1g03129 Nelumbo nucifera HOM05D003380 ORTHO05D004232 1.9e-20 102.8 57 87.7
Nitab4.5_0000404g0220 Nicotiana tabacum HOM05D003380 ORTHO05D004232 1.9e-20 102.8 61 82.0
Nitab4.5_0007423g0010 Nicotiana tabacum HOM05D003380 ORTHO05D004232 1.9e-20 102.8 61 82.0
Hund03262 Selenicereus undatus HOM05D003380 ORTHO05D004232 1.9e-20 102.8 57 87.7
unitig_578.g16397 Utricularia gibba HOM05D003380 ORTHO05D004232 1.9e-20 102.8 66 80.3
Cpa.g.sc148.3 Carica papaya HOM05D003380 ORTHO05D004232 2.4e-20 102.4 57 87.7
FAN15G0754 Fragaria x ananassa HOM05D003380 ORTHO05D004232 2.4e-20 102.4 66 77.3
C07p58510 Brassica napus HOM05D003380 ORTHO05D004232 3.2e-20 102.1 57 87.7
THA.LOC104819924 Tarenaya hassleriana HOM05D003380 ORTHO05D004232 3.2e-20 102.1 57 87.7
ECA240G0102 Erigeron canadensis HOM05D003380 ORTHO05D004232 4.2e-20 101.7 57 86.0
Ah.09g234230 Amaranthus hybridus HOM05D003380 ORTHO05D004232 7.1e-20 100.9 57 86.0
CDE04G3274 Ceratophyllum demersum HOM05D003380 ORTHO05D004232 7.1e-20 100.9 56 87.5
AUR62020647 Chenopodium quinoa HOM05D003380 ORTHO05D004232 7.1e-20 100.9 56 89.3
Duzib168G0804 Durio zibethinus HOM05D003380 ORTHO05D004232 7.1e-20 100.9 57 86.0
TWI63G0177 Tripterygium wilfordii HOM05D003380 ORTHO05D004232 7.1e-20 100.9 57 86.0
VMungo1309G0072 Vigna mungo HOM05D003380 ORTHO05D004232 9.3e-20 100.5 57 87.7
PGR044G1928 Punica granatum HOM05D003380 ORTHO05D004232 1.2e-19 100.1 56 89.3
ATR0626G170 Amborella trichopoda HOM05D003380 ORTHO05D004232 1.6e-19 99.8 57 87.7
EL10Ac2g03687 Beta vulgaris HOM05D003380 ORTHO05D004232 1.6e-19 99.8 56 87.5
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 1.6e-19 99.8 56 87.5
AUR62038728 Chenopodium quinoa HOM05D003380 ORTHO05D004232 1.6e-19 99.8 56 87.5
SEGI_36081 Sequoiadendron giganteum HOM05D003380 ORTHO05D004232 1.6e-19 99.8 55 89.1
Phvul.009G101000 Phaseolus vulgaris HOM05D006939 ORTHO05D008616 2.1e-19 99.4 58 82.8
HPP92_004718 Vanilla planifolia HOM05D003380 ORTHO05D004232 3.5e-19 98.6 57 84.2
vmacro15777 Vaccinium macrocarpon HOM05D003380 ORTHO05D004232 4.6e-19 98.2 80 68.8
DCAR_000673 Daucus carota HOM05D003380 ORTHO05D004232 7.9e-19 97.4 77 68.8
FvH4_7g10810 Fragaria vesca HOM05D003380 ORTHO05D004232 1.0e-18 97.1 57 84.2
FAN06G1260 Fragaria x ananassa HOM05D003380 ORTHO05D004232 1.0e-18 97.1 57 84.2
FAN06G5002 Fragaria x ananassa HOM05D003380 ORTHO05D004232 1.0e-18 97.1 57 84.2
Pp3c18_17380 Physcomitrium patens HOM05D003380 ORTHO05D004232 3.0e-18 95.5 55 83.6
MBI13_g34299_MAGBIO Magnolia biondii HOM05D003380 ORTHO05D004232 3.9e-18 95.1 68 73.5
AagrBONN_evm.TU.Sc2ySwM_228.613 Anthoceros agrestis HOM05D003380 ORTHO05D004232 5.1e-18 94.7 62 77.4
FAN03G3318 Fragaria x ananassa HOM05D003380 ORTHO05D004232 1.5e-17 93.2 57 80.7
GSVIVG01035567001 Vitis vinifera HOM05D003380 ORTHO05D004232 2.5e-17 92.4 50 92.0
Nitab4.5_0000899g0140 Nicotiana tabacum HOM05D003380 ORTHO05D004232 4.3e-17 91.7 61 78.7
Nitab4.5_0001535g0020 Nicotiana tabacum HOM05D003380 ORTHO05D004232 4.3e-17 91.7 61 78.7
Zm00001eb377530 Zea mays HOM05D003380 ORTHO05D004232 4.3e-17 91.7 65 72.3
Mapoly0016s0041 Marchantia polymorpha HOM05D003380 ORTHO05D004232 5.6e-17 91.3 55 78.2
Zm00001eb270240 Zea mays HOM05D003380 ORTHO05D004232 9.6e-17 90.5 58 77.6
Os06g0139900 Oryza sativa ssp. japonica HOM05D003380 ORTHO05D004232 1.3e-16 90.1 62 72.6
Os02g0770000 Oryza sativa ssp. japonica HOM05D003380 ORTHO05D004232 3.6e-16 88.6 52 82.7
SMO117G0031 Selaginella moellendorffii HOM05D003380 ORTHO05D004232 4.8e-16 88.2 65 72.3
CBR_g55787 Chara braunii HOM05D003380 ORTHO05D004232 7.6e-14 80.9 62 67.7
PRCOL_00006052 Prasinoderma coloniale HOM05D003380 ORTHO05D004232 7.6e-14 80.9 57 70.2
Cre06.g279000 Chlamydomonas reinhardtii HOM05D003380 ORTHO05D004232 3.2e-12 75.5 55 69.1
MCO16G567 Micromonas commoda HOM05D003380 ORTHO05D004232 3.2e-12 75.5 51 74.5
Haze_27561 Corylus avellana HOM05D003380 ORTHO05D004232 3.0e-10 68.9 51 60.8
Cre12.g531100 Chlamydomonas reinhardtii HOM05D003380 ORTHO05D004232 4.3e-09 65.1 54 59.3
PRCOL_00005615 Prasinoderma coloniale HOM05D003380 ORTHO05D004232 1.6e-08 63.2 52 61.5
CiPaw.04G053900 Carya illinoinensis HOM05D003380 ORTHO05D004232 4.8e-08 61.6 38 81.6
Nitab4.5_0000749g0120 Nicotiana tabacum HOM05D003380 ORTHO05D004232 4.8e-08 61.6 49 59.2
CiPaw.15G028500 Carya illinoinensis HOM05D003380 ORTHO05D004232 5.3e-07 58.2 38 78.9


User provided reference genes

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