Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 4.3e-167 591.3 300 100.0
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 7.9e-113 411.0 302 72.5
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 2.3e-104 382.9 302 67.5
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 5.5e-98 361.7 328 60.4
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 7.0e-85 318.2 301 59.1
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 2.6e-84 316.2 305 59.3
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 1.2e-81 307.4 300 56.7
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 1.2e-73 280.8 300 54.0
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 3.6e-73 279.3 240 61.2
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 5.2e-72 275.4 311 52.1
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 8.8e-72 274.6 300 53.7
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 2.0e-71 273.5 217 64.1
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 9.8e-71 271.2 300 53.3
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 9.8e-71 271.2 214 64.0
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 1.3e-70 270.8 210 65.2
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 2.2e-70 270.0 199 68.8
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 2.8e-70 269.6 243 60.9
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 4.8e-70 268.9 212 63.2
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 6.3e-70 268.5 204 65.2
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 1.4e-69 267.3 205 66.3
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 1.4e-69 267.3 217 63.1
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 1.8e-69 266.9 217 62.7
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 2.4e-69 266.5 268 56.7
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 4.1e-69 265.8 268 56.7
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 5.4e-69 265.4 243 60.1
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 9.1e-69 264.6 213 64.3
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 1.6e-68 263.8 192 66.1
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 2.7e-68 263.1 206 65.5
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 2.7e-68 263.1 202 65.3
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 7.7e-68 261.5 203 64.5
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 7.7e-68 261.5 203 64.5
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.7e-67 260.4 203 65.0
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 1.7e-67 260.4 211 62.6
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 1.7e-67 260.4 223 58.3
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 3.8e-67 259.2 212 59.4
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 5.0e-67 258.8 205 62.9
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 5.0e-67 258.8 211 58.3
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 6.5e-67 258.5 264 53.8
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.5e-66 257.3 203 64.5
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 1.5e-66 257.3 261 55.6
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 1.5e-66 257.3 270 53.7
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 5.5e-66 255.4 206 63.1
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 7.2e-66 255.0 178 69.1
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 9.4e-66 254.6 206 62.6
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 9.4e-66 254.6 211 60.2
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 9.4e-66 254.6 191 66.5
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 1.6e-65 253.8 212 59.0
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.1e-65 253.4 203 63.5
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 2.7e-65 253.1 211 62.1
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 4.7e-65 252.3 207 61.4
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 4.7e-65 252.3 194 63.9
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 6.1e-65 251.9 202 63.9
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 3.0e-64 249.6 196 63.3
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 3.0e-64 249.6 203 61.6
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 4.0e-64 249.2 203 62.1
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 5.2e-64 248.8 207 61.4
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 1.2e-63 247.7 205 63.4
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 1.5e-63 247.3 209 61.2
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 2.0e-63 246.9 192 64.1
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 3.4e-63 246.1 203 61.1
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 4.4e-63 245.7 192 63.0
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 4.4e-63 245.7 207 59.9
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 1.7e-62 243.8 202 61.4
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 2.2e-62 243.4 207 60.9
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 2.8e-62 243.0 202 61.4
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 4.9e-62 242.3 202 61.4
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 1.8e-61 240.4 250 53.2
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 3.1e-61 239.6 206 59.2
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 4.1e-61 239.2 205 59.5
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 4.1e-61 239.2 206 61.7
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 5.4e-61 238.8 191 62.8
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 5.4e-61 238.8 201 60.2
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 7.0e-61 238.4 203 56.7
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 7.0e-61 238.4 209 58.4
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 7.0e-61 238.4 205 60.0
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 7.0e-61 238.4 253 51.0
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 2.0e-60 236.9 218 56.0
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 2.7e-60 236.5 191 61.8
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 3.5e-60 236.1 191 61.8
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 4.5e-60 235.7 191 62.3
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 3.8e-59 232.6 191 60.2
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 1.1e-58 231.1 208 61.1
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 9.5e-58 228.0 197 58.4
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 4.7e-57 225.7 191 57.6
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 1.4e-56 224.2 205 58.5
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 2.3e-56 223.4 191 58.6
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 2.3e-56 223.4 271 49.8
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 3.4e-55 219.5 191 61.3
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 2.7e-52 209.9 154 70.1
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 7.8e-52 208.4 232 50.9
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 1.3e-51 207.6 214 54.2
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 3.9e-51 206.1 167 62.3
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 1.5e-50 204.1 203 53.2
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 1.9e-50 203.8 191 52.9
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 1.6e-49 200.7 168 63.7
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 4.7e-49 199.1 151 67.5
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.2e-47 194.5 142 69.7
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 7.5e-47 191.8 154 63.0
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 2.2e-46 190.3 169 58.0
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 8.3e-46 188.3 176 58.0
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 2.4e-45 186.8 167 58.1
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 7.8e-44 181.8 127 70.1
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 1.2e-41 174.5 196 51.5
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 6.2e-41 172.2 212 50.9
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 6.2e-41 172.2 191 46.6
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 6.2e-41 172.2 196 46.9
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 1.7e-38 164.1 163 57.1
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 2.2e-38 163.7 134 59.7
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 5.6e-34 149.1 154 53.2
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 1.2e-33 147.9 120 63.3
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 6.4e-30 135.6 197 42.6
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 1.9e-29 134.0 191 39.8
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 4.4e-23 112.8 113 54.9
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 1.2e-20 104.8 179 36.3
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 1.2e-20 104.8 179 36.3
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 2.7e-20 103.6 82 64.6
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 3.5e-20 103.2 88 59.1
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 1.1e-16 91.7 235 31.1
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 9.0e-16 88.6 123 35.8
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 4.5e-15 86.3 100 50.0
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 3.5e-12 76.6 155 35.5
SalBow1G6520 Salvia bowleyana HOM05D001890 ORTHO05D008163 3.0e-11 73.6 89 49.4
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 1.3e-09 68.2 105 41.9
Lj3C241T8 Lonicera japonica HOM05D001890 ORTHO05D008163 5.8e-07 59.3 146 33.6
Peaxi162Scf00767g00522 Petunia axillaris HOM05D001890 ORTHO05D008163 2.9e-06 57.0 102 36.3


User provided reference genes

Program Settings