Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 5.8e-77 290.8 145 100.0
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 8.4e-52 207.2 147 71.4
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 1.3e-49 199.9 143 65.7
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 5.8e-45 184.5 140 64.3
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 1.7e-44 183.0 143 65.7
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 1.1e-43 180.3 140 63.6
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 3.5e-42 175.3 122 68.0
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 6.0e-42 174.5 129 64.3
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 1.0e-41 173.7 133 62.4
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 1.3e-41 173.3 140 61.4
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 8.7e-41 170.6 141 58.9
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 1.1e-40 170.2 140 62.1
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 3.3e-40 168.7 145 56.6
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 3.6e-39 165.2 128 62.5
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 1.8e-38 162.9 127 64.6
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 1.8e-38 162.9 135 59.3
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 3.1e-38 162.2 144 56.2
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.2e-37 160.2 130 60.8
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 2.0e-37 159.5 133 58.6
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 2.6e-37 159.1 135 57.8
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 3.4e-37 158.7 145 56.6
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 5.8e-37 157.9 143 55.9
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 9.9e-37 157.1 147 53.1
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 1.3e-36 156.8 143 55.9
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 1.3e-36 156.8 137 57.7
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 2.2e-36 156.0 135 55.6
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 2.2e-36 156.0 138 58.7
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 2.9e-36 155.6 140 53.6
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 3.8e-36 155.2 140 52.9
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 4.9e-36 154.8 142 55.6
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 6.4e-36 154.5 143 55.2
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 6.4e-36 154.5 135 54.8
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 8.4e-36 154.1 144 54.2
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 1.4e-35 153.3 136 56.6
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 1.9e-35 152.9 140 54.3
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 2.4e-35 152.5 143 53.8
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 4.2e-35 151.8 115 61.7
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 3.5e-34 148.7 141 51.8
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 3.5e-34 148.7 132 53.8
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 1.3e-33 146.7 136 52.9
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 1.3e-33 146.7 143 52.4
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 3.0e-33 145.6 133 57.1
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 3.0e-33 145.6 133 57.1
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 5.1e-33 144.8 141 50.4
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 5.1e-33 144.8 155 51.6
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 5.1e-33 144.8 133 57.1
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 5.1e-33 144.8 133 57.1
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 5.1e-33 144.8 128 57.0
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 6.7e-33 144.4 142 52.1
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 1.5e-32 143.3 140 50.7
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 1.5e-32 143.3 140 50.7
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 1.5e-32 143.3 159 47.2
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 1.9e-32 142.9 168 46.4
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 1.9e-32 142.9 142 52.1
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 2.5e-32 142.5 122 55.7
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 7.4e-32 141.0 137 52.6
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 7.4e-32 141.0 137 52.6
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.3e-31 140.2 129 56.6
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.3e-31 140.2 129 56.6
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 2.8e-31 139.0 137 52.6
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 3.7e-31 138.7 162 45.7
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 3.7e-31 138.7 115 56.5
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 4.8e-31 138.3 115 57.4
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 1.1e-30 137.1 185 42.2
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 1.1e-30 137.1 142 50.7
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.4e-30 136.7 115 56.5
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 2.4e-30 136.0 116 56.0
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 3.1e-30 135.6 132 50.0
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 4.0e-30 135.2 130 51.5
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 4.0e-30 135.2 141 49.6
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 6.9e-30 134.4 139 45.3
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 3.4e-29 132.1 117 51.3
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 7.6e-29 131.0 135 48.9
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 9.9e-29 130.6 119 52.1
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 2.2e-28 129.4 144 46.5
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 3.8e-28 128.6 125 53.6
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 4.9e-28 128.3 141 48.2
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 8.4e-28 127.5 119 52.1
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 1.1e-27 127.1 140 46.4
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 1.9e-27 126.3 119 51.3
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 2.4e-27 125.9 119 52.1
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 5.5e-27 124.8 142 45.1
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 5.5e-27 124.8 140 45.7
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 7.1e-27 124.4 122 53.3
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 1.2e-26 123.6 119 48.7
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 1.2e-26 123.6 143 46.9
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 1.6e-26 123.2 132 49.2
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 4.6e-26 121.7 144 44.4
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 1.8e-25 119.8 124 51.6
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 3.9e-25 118.6 131 48.1
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 1.3e-23 113.6 141 42.6
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.3e-23 113.6 119 48.7
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 1.4e-22 110.2 98 52.0
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 1.4e-22 110.2 119 47.9
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 2.4e-22 109.4 98 55.1
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 3.1e-22 109.0 98 52.0
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.1e-22 109.0 123 46.3
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 5.3e-22 108.2 108 51.9
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 9.0e-22 107.5 99 51.5
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 9.0e-22 107.5 99 51.5
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 1.2e-21 107.1 170 40.0
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 8.4e-20 100.9 148 39.2
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 5.5e-19 98.2 124 42.7
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 1.2e-18 97.1 67 64.2
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 3.9e-17 92.0 115 41.7
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 7.4e-16 87.8 80 52.5
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 3.7e-15 85.5 82 47.6
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.5e-13 80.1 70 47.1
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 1.0e-09 67.4 100 40.0
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 1.1e-08 63.9 52 55.8
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 1.1e-08 63.9 54 55.6
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 3.3e-08 62.4 54 50.0
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 9.7e-08 60.8 81 39.5
Pp3c17_18030 Physcomitrium patens HOM05D016889 ORTHO05D026570 2.4e-06 56.2 98 36.7
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 6.9e-06 54.7 54 50.0
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 6.9e-06 54.7 58 41.4


User provided reference genes

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