Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 2.8e-134 481.9 230 100.0
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 1.4e-125 453.0 218 99.5
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 8.2e-110 400.6 218 87.6
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 3.1e-109 398.7 218 85.8
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 4.1e-109 398.3 219 86.3
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 5.3e-109 397.9 218 86.2
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 5.3e-109 397.9 218 88.1
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 1.2e-108 396.7 218 85.3
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 1.2e-108 396.7 218 85.3
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 2.0e-108 396.0 218 85.3
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 3.4e-108 395.2 218 85.8
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 1.3e-107 393.3 218 84.9
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 2.2e-107 392.5 218 84.4
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 2.9e-107 392.1 218 83.9
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 2.9e-107 392.1 218 84.4
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 3.8e-107 391.7 220 82.3
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 8.5e-107 390.6 218 84.4
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 1.9e-106 389.4 218 83.5
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 1.9e-106 389.4 218 83.5
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 1.9e-106 389.4 218 84.4
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.9e-106 389.4 218 82.6
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.9e-106 389.4 218 82.6
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 1.9e-106 389.4 218 82.6
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 2.5e-106 389.0 218 84.9
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 2.5e-106 389.0 218 82.1
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 2.5e-106 389.0 218 81.7
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 4.2e-106 388.3 218 82.1
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 5.5e-106 387.9 218 83.0
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 5.5e-106 387.9 218 81.7
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 5.5e-106 387.9 218 82.1
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 7.2e-106 387.5 218 83.9
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 7.2e-106 387.5 218 83.0
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 7.2e-106 387.5 218 83.9
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 9.4e-106 387.1 218 83.0
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 9.4e-106 387.1 230 79.6
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.2e-105 386.7 218 82.1
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 1.6e-105 386.3 218 82.6
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 2.1e-105 386.0 218 83.9
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 2.7e-105 385.6 218 83.5
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 2.7e-105 385.6 218 83.0
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 2.7e-105 385.6 218 83.0
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 2.7e-105 385.6 218 83.0
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 2.7e-105 385.6 218 82.6
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 2.7e-105 385.6 218 82.6
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 2.7e-105 385.6 218 83.5
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 2.7e-105 385.6 218 83.0
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 3.6e-105 385.2 218 82.6
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 3.6e-105 385.2 218 82.6
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 3.6e-105 385.2 218 82.1
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 4.6e-105 384.8 218 83.9
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 6.1e-105 384.4 218 81.7
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 7.9e-105 384.0 218 82.1
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 1.8e-104 382.9 218 82.1
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 1.8e-104 382.9 218 81.7
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 1.8e-104 382.9 218 82.6
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 2.3e-104 382.5 218 81.7
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 2.3e-104 382.5 218 81.2
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 3.0e-104 382.1 218 81.7
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 3.0e-104 382.1 218 81.7
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 3.9e-104 381.7 218 81.2
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 3.9e-104 381.7 218 82.1
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 3.9e-104 381.7 218 82.1
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 5.1e-104 381.3 218 81.7
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 6.7e-104 380.9 218 81.7
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 6.7e-104 380.9 218 81.7
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 6.7e-104 380.9 218 81.2
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 6.7e-104 380.9 218 81.2
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 8.8e-104 380.6 218 81.7
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 1.1e-103 380.2 218 81.7
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 1.5e-103 379.8 218 81.7
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 2.5e-103 379.0 218 82.1
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 3.3e-103 378.6 218 81.7
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.3e-103 378.6 218 80.7
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 5.7e-103 377.9 218 82.1
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 7.4e-103 377.5 218 81.2
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 7.4e-103 377.5 218 80.7
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 1.3e-102 376.7 218 83.5
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 1.3e-102 376.7 218 81.2
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 2.2e-102 375.9 218 80.3
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 4.8e-102 374.8 218 80.7
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 4.8e-102 374.8 218 79.8
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 6.3e-102 374.4 218 80.3
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 6.3e-102 374.4 218 79.4
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 8.2e-102 374.0 218 82.1
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 1.1e-101 373.6 219 80.4
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 1.8e-101 372.9 218 79.8
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 2.6e-100 369.0 218 79.4
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 3.6e-97 358.6 218 74.8
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 4.7e-97 358.2 218 75.7
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 6.7e-96 354.4 226 76.1
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 4.4e-95 351.7 225 76.9
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 1.3e-94 350.1 275 63.3
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 1.7e-94 349.7 218 74.8
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 2.2e-94 349.4 222 77.0
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 2.0e-92 342.8 218 73.4
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 2.9e-91 339.0 223 73.1
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 3.8e-91 338.6 218 70.6
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 6.5e-91 337.8 251 68.5
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 5.5e-90 334.7 187 84.5
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.8e-88 329.7 223 72.6
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 5.2e-88 328.2 218 68.8
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 6.3e-86 321.2 187 80.7
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 4.1e-85 318.5 218 68.3
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 5.9e-84 314.7 185 81.6
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 5.5e-74 281.6 184 67.9
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 4.8e-70 268.5 158 80.4
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 1.3e-67 260.4 218 58.3
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 1.3e-62 243.8 225 54.7
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 1.1e-58 230.7 219 48.9
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.5e-58 230.3 157 70.7
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 3.6e-57 225.7 244 48.0
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 1.2e-55 220.7 122 82.8
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 3.2e-53 212.6 132 77.3
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 2.7e-52 209.5 218 49.5
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 3.1e-48 196.1 118 78.8
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 3.5e-44 182.6 154 63.6
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 1.3e-43 180.6 122 72.1
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 1.3e-43 180.6 147 64.6
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 2.3e-40 169.9 97 81.4
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 1.6e-36 157.1 172 51.2
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.6e-36 157.1 85 83.5
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 1.6e-36 157.1 137 59.9
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 6.6e-35 151.8 114 64.0
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 6.2e-33 145.2 103 67.0
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 7.6e-31 138.3 76 82.9
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 4.2e-29 132.5 85 71.8
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 1.1e-26 124.4 69 82.6
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 1.6e-25 120.6 66 84.8
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 2.1e-25 120.2 67 80.6
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 9.0e-24 114.8 62 83.9
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 2.7e-20 103.2 69 71.0
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 6.0e-20 102.1 203 36.5
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 6.6e-19 98.6 69 68.1
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 6.4e-14 82.0 165 32.1
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 5.4e-13 79.0 55 65.5
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 8.7e-11 71.6 61 59.0
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.5e-07 60.8 34 79.4
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 2.0e-07 60.5 161 30.4
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.6e-07 60.1 148 28.4
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 4.5e-07 59.3 63 50.8
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 5.8e-07 58.9 148 27.0
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 5.8e-07 58.9 186 28.5
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 7.6e-07 58.5 229 27.9
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 1.7e-06 57.4 219 26.9
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 2.2e-06 57.0 145 33.1
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 4.9e-06 55.8 189 30.2


User provided reference genes

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