Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 7.7e-135 483.8 242 100.0
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 3.8e-89 332.0 251 70.1
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 2.1e-84 316.2 240 69.6
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 5.6e-77 291.6 245 63.7
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 3.8e-73 278.9 247 64.4
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 5.4e-72 275.0 249 60.6
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 3.5e-71 272.3 236 63.6
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 3.5e-71 272.3 250 59.6
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 1.8e-70 270.0 224 64.3
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 3.9e-70 268.9 224 63.8
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 5.1e-70 268.5 236 61.0
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 6.7e-70 268.1 252 61.1
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.1e-69 267.3 246 58.5
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 2.8e-68 262.7 202 67.3
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 6.2e-68 261.5 247 59.1
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 4.0e-67 258.8 223 63.7
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 4.0e-67 258.8 254 58.7
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 6.9e-67 258.1 249 58.2
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 9.0e-67 257.7 242 59.5
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 2.6e-66 256.1 209 64.6
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 3.4e-66 255.8 205 66.3
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 3.4e-66 255.8 244 59.0
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 4.5e-66 255.4 244 58.6
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 4.5e-66 255.4 253 58.5
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 5.8e-66 255.0 239 60.7
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 1.3e-65 253.8 244 57.8
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 1.7e-65 253.4 244 57.8
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 1.7e-65 253.4 244 57.8
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 1.7e-65 253.4 253 56.9
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 3.8e-65 252.3 244 57.8
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 3.8e-65 252.3 249 58.2
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 1.1e-64 250.8 254 57.5
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 2.5e-64 249.6 249 57.0
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 3.2e-64 249.2 242 57.9
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 4.2e-64 248.8 253 56.5
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 4.2e-64 248.8 254 56.3
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 5.5e-64 248.4 240 57.9
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.6e-63 246.9 241 56.4
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 4.6e-63 245.4 255 53.3
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 4.6e-63 245.4 255 53.7
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 6.0e-63 245.0 203 65.5
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 7.9e-63 244.6 243 57.6
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 1.3e-62 243.8 217 62.2
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 1.8e-62 243.4 241 57.7
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 1.9e-61 240.0 250 54.4
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 1.9e-61 240.0 247 57.5
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 4.3e-61 238.8 244 56.1
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 4.3e-61 238.8 237 59.1
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 4.3e-61 238.8 243 57.6
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 5.7e-61 238.4 205 61.5
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 5.7e-61 238.4 243 57.2
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 7.4e-61 238.0 245 54.7
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 7.4e-61 238.0 249 56.6
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 7.4e-61 238.0 252 53.2
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 9.6e-61 237.7 222 59.9
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 9.6e-61 237.7 244 56.1
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 1.3e-60 237.3 247 56.3
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 1.3e-60 237.3 259 55.6
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 1.6e-60 236.9 202 65.8
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.6e-60 236.9 204 61.8
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 3.7e-60 235.7 247 55.9
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 3.7e-60 235.7 240 56.2
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 4.8e-60 235.3 271 50.9
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.1e-59 234.2 192 65.1
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 1.1e-59 234.2 241 57.3
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 1.8e-59 233.4 247 53.8
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 3.1e-59 232.6 249 54.2
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 3.1e-59 232.6 249 54.2
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 3.1e-59 232.6 205 60.0
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 6.9e-59 231.5 203 62.1
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 6.9e-59 231.5 207 62.3
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 9.0e-59 231.1 239 56.5
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 2.0e-58 229.9 238 55.5
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.0e-58 229.9 238 55.5
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.0e-58 229.9 240 54.6
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 2.6e-58 229.6 201 59.7
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 2.6e-58 229.6 236 53.4
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 3.4e-58 229.2 243 53.5
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.4e-58 229.2 237 55.7
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 3.4e-58 229.2 204 59.8
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.5e-58 228.8 238 55.9
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.5e-58 228.8 243 56.4
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 4.5e-58 228.8 236 53.0
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 7.6e-58 228.0 235 54.0
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 1.7e-57 226.9 201 58.7
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.7e-57 226.9 203 61.1
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 2.2e-57 226.5 248 54.8
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.0e-57 225.3 267 50.6
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.4e-56 223.8 230 53.0
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 1.9e-56 223.4 204 58.3
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 3.2e-56 222.6 207 61.4
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 5.5e-56 221.9 203 58.6
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 5.5e-56 221.9 205 59.5
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 5.5e-56 221.9 201 61.7
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 5.5e-56 221.9 240 53.8
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 1.2e-55 220.7 261 53.3
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.6e-55 220.3 197 62.9
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 2.1e-55 219.9 206 60.7
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 6.1e-55 218.4 234 55.1
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.0e-54 217.6 233 54.9
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 3.9e-54 215.7 217 54.8
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 2.5e-53 213.0 229 50.7
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.3e-53 212.6 201 59.7
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 4.3e-53 212.2 215 57.2
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 1.3e-52 210.7 244 52.9
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 1.6e-52 210.3 188 59.6
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 2.8e-52 209.5 201 59.2
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 6.3e-52 208.4 234 53.4
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.4e-51 207.2 201 59.2
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.0e-50 203.4 265 49.4
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 3.4e-50 202.6 229 51.1
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 5.9e-50 201.8 241 51.0
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.7e-49 200.3 236 48.7
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.7e-49 200.3 194 54.6
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 3.8e-49 199.1 241 51.0
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 5.0e-49 198.7 195 56.9
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.4e-48 197.2 238 50.4
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 5.5e-48 195.3 229 48.9
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 7.2e-48 194.9 202 54.0
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 7.2e-48 194.9 231 49.8
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.6e-47 193.7 231 49.8
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 3.6e-47 192.6 202 53.0
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 1.0e-46 191.0 200 53.5
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.8e-46 190.3 165 64.2
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.8e-46 190.3 214 49.5
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 1.1e-45 187.6 165 61.8
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 1.1e-45 187.6 165 61.8
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 1.1e-45 187.6 165 61.8
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.1e-45 187.6 213 52.6
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.1e-45 187.6 192 56.2
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 1.5e-45 187.2 208 51.4
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.5e-45 186.4 264 46.2
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 4.3e-45 185.7 165 61.8
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 1.7e-44 183.7 166 61.4
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 1.3e-41 174.1 153 62.7
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 8.5e-41 171.4 193 48.7
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 5.5e-40 168.7 131 67.2
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 2.3e-38 163.3 186 53.2
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 4.8e-36 155.6 188 50.0
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 9.1e-35 151.4 186 50.0
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 1.0e-33 147.9 102 71.6
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 1.3e-33 147.5 131 63.4
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 3.8e-33 146.0 202 42.1
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.1e-29 134.4 199 45.2
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.1e-29 134.4 190 44.2
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 7.5e-29 131.7 115 64.3
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.1e-27 127.9 192 44.3
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 4.1e-27 125.9 108 63.9
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 4.7e-23 112.5 83 69.9
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 9.8e-21 104.8 187 35.8
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.8e-19 100.5 80 61.2
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 3.8e-17 92.8 109 49.5
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 3.2e-16 89.7 97 52.6
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 6.3e-12 75.5 83 51.8
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 8.3e-12 75.1 85 50.6
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.2e-07 61.2 141 37.6
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 2.8e-07 60.1 77 44.2
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.0e-06 56.6 82 39.0


User provided reference genes

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