Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 3.6e-79 298.1 145 100.0
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 4.6e-74 281.2 145 92.4
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 3.7e-68 261.5 145 83.4
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 3.7e-68 261.5 145 83.4
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 2.3e-65 252.3 145 80.0
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 8.1e-63 243.8 142 79.6
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 4.0e-62 241.5 133 84.2
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 8.9e-62 240.4 145 77.2
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 4.3e-56 221.5 145 73.8
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 6.2e-55 217.6 140 73.6
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.2e-54 214.5 140 72.9
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 8.9e-54 213.8 145 71.7
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 1.5e-53 213.0 137 74.5
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 2.0e-53 212.6 142 70.4
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.6e-53 212.2 140 72.1
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 2.6e-53 212.2 141 71.6
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.4e-53 211.8 145 71.0
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 3.4e-53 211.8 138 72.5
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 5.8e-53 211.1 142 70.4
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 7.6e-53 210.7 141 70.9
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.3e-52 209.9 141 72.3
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 1.7e-52 209.5 140 72.1
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 1.7e-52 209.5 142 69.7
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 3.8e-52 208.4 141 69.5
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 4.9e-52 208.0 137 73.0
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 8.4e-52 207.2 136 72.1
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 8.4e-52 207.2 141 67.4
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.1e-51 206.8 141 70.9
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 1.9e-51 206.1 145 67.6
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 3.2e-51 205.3 138 69.6
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 3.2e-51 205.3 142 66.9
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 4.1e-51 204.9 141 68.1
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 5.4e-51 204.5 141 68.1
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 5.4e-51 204.5 141 68.1
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 1.2e-50 203.4 144 63.2
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 3.5e-50 201.8 138 68.1
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 7.8e-50 200.7 146 65.8
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 7.8e-50 200.7 142 64.8
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 1.3e-49 199.9 138 68.1
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 2.3e-49 199.1 143 66.4
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 5.1e-49 198.0 140 64.3
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 1.5e-48 196.4 143 62.9
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 3.3e-48 195.3 143 65.7
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 4.3e-48 194.9 137 67.2
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 1.2e-47 193.4 139 66.9
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 1.6e-47 193.0 137 65.7
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 2.1e-47 192.6 142 63.4
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 2.1e-47 192.6 142 62.7
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 2.8e-47 192.2 137 65.7
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 4.7e-47 191.4 139 66.2
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 8.1e-47 190.7 139 65.5
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 1.1e-46 190.3 139 66.9
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 1.1e-46 190.3 142 62.0
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 2.4e-46 189.1 135 65.2
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 6.9e-46 187.6 132 66.7
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 9.0e-46 187.2 144 61.1
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.2e-45 186.8 146 58.9
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 3.4e-45 185.3 143 60.1
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 4.4e-45 184.9 145 62.1
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 7.6e-45 184.1 132 63.6
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 9.9e-45 183.7 141 61.7
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 9.9e-45 183.7 141 61.7
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 2.2e-44 182.6 132 63.6
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 2.2e-44 182.6 143 60.1
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 2.9e-44 182.2 137 61.3
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 3.8e-44 181.8 140 64.3
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 4.9e-44 181.4 141 61.0
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 8.4e-44 180.6 156 57.7
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 1.1e-43 180.3 132 65.9
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 1.1e-43 180.3 130 66.2
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 1.4e-43 179.9 132 65.9
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 2.4e-43 179.1 139 61.9
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 5.4e-43 177.9 129 66.7
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 5.4e-43 177.9 129 66.7
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 5.4e-43 177.9 129 66.7
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 7.1e-43 177.6 129 65.1
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 7.1e-43 177.6 143 60.1
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 2.1e-42 176.0 129 64.3
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 2.1e-42 176.0 129 64.3
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 4.6e-42 174.9 135 63.0
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 7.8e-42 174.1 131 63.4
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.0e-41 173.7 130 63.1
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.3e-41 173.3 127 68.5
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 1.3e-41 173.3 125 63.2
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 1.7e-41 172.9 133 62.4
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 1.7e-41 172.9 133 62.4
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 1.7e-41 172.9 133 62.4
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 1.7e-41 172.9 127 65.4
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 1.7e-41 172.9 139 59.0
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 6.6e-41 171.0 142 58.5
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 1.9e-40 169.5 130 60.8
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 1.9e-40 169.5 210 45.2
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 2.5e-40 169.1 132 59.8
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.3e-40 168.7 140 59.3
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 4.3e-40 168.3 139 58.3
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.3e-39 166.8 119 68.1
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.1e-39 166.0 128 60.9
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.8e-39 165.6 128 60.9
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 3.6e-39 165.2 130 60.0
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 3.6e-39 165.2 129 62.0
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 8.1e-39 164.1 138 52.9
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 8.1e-39 164.1 128 60.2
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.1e-38 163.7 138 53.6
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 1.1e-38 163.7 122 63.1
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 1.4e-38 163.3 131 55.7
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 1.8e-38 162.9 139 56.8
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.4e-38 162.5 128 60.2
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 4.0e-38 161.8 121 62.8
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 2.0e-37 159.5 140 57.9
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 3.8e-36 155.2 127 55.1
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 8.4e-36 154.1 148 53.4
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 2.1e-34 149.4 112 63.4
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 1.0e-33 147.1 192 45.3
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.9e-32 142.9 139 47.5
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 2.8e-31 139.0 130 53.1
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 3.7e-31 138.7 125 52.8
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 2.4e-30 136.0 131 51.9
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 5.8e-29 131.3 212 36.3
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 3.8e-28 128.6 131 42.7
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 4.9e-28 128.3 131 42.7
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 3.2e-27 125.6 131 43.5
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 1.2e-26 123.6 116 50.9
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 1.0e-25 120.6 98 60.2
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 3.0e-25 119.0 143 40.6
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 3.9e-25 118.6 116 48.3
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 1.1e-24 117.1 76 72.4
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 1.5e-24 116.7 116 47.4
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 2.1e-23 112.8 144 43.8
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 2.1e-23 112.8 96 55.2
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 2.8e-23 112.5 81 65.4
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 4.8e-23 111.7 84 61.9
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 1.4e-22 110.2 96 55.2
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 4.9e-20 101.7 81 61.7
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 6.7e-17 91.3 134 38.1
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.4e-14 83.6 56 69.6
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.4e-14 83.6 56 69.6
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 5.3e-14 81.6 134 35.1
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 2.6e-13 79.3 142 31.0
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 4.5e-13 78.6 134 32.8
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 5.9e-13 78.2 73 53.4
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 7.7e-13 77.8 79 53.2
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 7.7e-13 77.8 144 29.9
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 7.7e-13 77.8 88 47.7
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 2.8e-07 59.3 104 33.7
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 3.7e-07 58.9 37 75.7


User provided reference genes

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