Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 0.0e+00 1126.7 583 100.0
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 4.4e-269 931.0 560 84.3
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 6.0e-258 894.0 607 78.6
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 3.0e-257 891.7 566 81.1
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 1.1e-256 889.8 562 80.1
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 7.1e-251 870.5 570 77.9
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 1.0e-249 866.7 569 77.7
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 1.0e-249 866.7 561 79.0
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 3.0e-249 865.1 549 78.7
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.9e-249 864.8 552 79.3
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 6.6e-249 864.0 552 79.3
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 1.1e-248 863.2 565 77.9
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.5e-248 862.8 570 77.2
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 8.1e-247 857.1 570 77.0
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.1e-246 856.7 566 77.6
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 3.1e-246 855.1 561 78.8
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 8.9e-246 853.6 566 77.2
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 2.0e-245 852.4 552 78.4
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 4.4e-245 851.3 566 76.7
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 1.7e-244 849.4 552 78.4
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 2.2e-244 849.0 552 77.2
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.9e-244 847.8 553 79.4
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 4.9e-244 847.8 566 75.8
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 1.1e-243 846.7 566 75.4
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.9e-243 845.9 564 77.7
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.9e-243 845.9 552 77.7
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 4.2e-243 844.7 565 75.6
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 7.1e-243 844.0 564 76.4
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 9.3e-243 843.6 568 76.8
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 1.2e-242 843.2 602 71.9
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 2.7e-242 842.0 564 77.5
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 7.8e-242 840.5 564 76.2
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 2.3e-241 839.0 566 76.0
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 3.0e-241 838.6 558 75.6
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 6.6e-241 837.4 564 75.9
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 3.3e-240 835.1 552 76.3
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 3.6e-239 831.6 552 76.4
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 8.1e-239 830.5 553 77.0
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 1.8e-238 829.3 559 75.8
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 3.1e-238 828.6 552 76.6
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 4.0e-238 828.2 552 75.5
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 9.0e-238 827.0 552 75.4
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.2e-237 826.6 552 75.5
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.5e-237 826.2 552 75.5
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 1.5e-237 826.2 569 74.3
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.6e-237 825.5 619 70.4
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.4e-237 824.7 554 76.0
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 1.3e-236 823.2 620 70.2
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.3e-236 823.2 552 75.0
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.7e-236 822.8 565 72.9
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 2.9e-236 822.0 565 73.3
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 4.9e-236 821.2 553 75.9
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 4.9e-236 821.2 565 74.5
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 6.4e-236 820.8 565 72.6
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 6.4e-236 820.8 566 73.0
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 6.4e-236 820.8 567 74.1
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 8.4e-236 820.5 553 76.5
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 1.1e-235 820.1 556 75.5
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.9e-235 819.3 566 74.2
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 3.2e-235 818.5 565 72.4
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 7.1e-235 817.4 567 73.0
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 2.1e-234 815.8 556 73.7
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 3.5e-234 815.1 552 74.8
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.6e-234 814.7 552 75.0
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 6.0e-234 814.3 552 74.8
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 7.9e-234 813.9 564 73.6
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 1.0e-233 813.5 565 72.7
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.0e-233 813.5 552 73.7
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 1.3e-233 813.1 556 73.6
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.3e-233 813.1 485 86.0
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.3e-233 813.1 552 74.8
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.7e-233 812.8 558 73.1
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.9e-233 811.6 581 72.6
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 5.1e-233 811.2 572 71.3
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 7.3e-232 807.4 589 71.8
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 9.6e-232 807.0 552 73.6
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 2.1e-231 805.8 585 71.8
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 2.8e-231 805.4 552 73.9
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 4.0e-230 801.6 567 72.3
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 2.0e-229 799.3 553 73.6
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 3.4e-229 798.5 553 73.2
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 5.8e-229 797.7 552 74.5
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 6.4e-228 794.3 590 69.8
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 8.4e-228 793.9 564 71.6
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 8.4e-228 793.9 552 73.2
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 5.4e-227 791.2 552 72.8
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 5.4e-227 791.2 553 73.1
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.2e-226 790.0 554 71.5
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 3.5e-226 788.5 564 70.9
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 3.5e-226 788.5 553 72.5
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 6.0e-226 787.7 548 74.8
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 7.9e-226 787.3 584 69.9
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 1.0e-225 786.9 566 71.0
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 2.3e-225 785.8 553 72.2
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 8.7e-225 783.9 566 70.8
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 1.1e-224 783.5 562 70.8
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 2.5e-224 782.3 531 74.2
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 3.7e-223 778.5 553 71.6
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 3.7e-223 778.5 553 71.6
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 4.8e-223 778.1 553 71.4
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 6.2e-223 777.7 550 71.6
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 6.2e-223 777.7 535 74.2
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 3.1e-222 775.4 564 70.9
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 4.0e-222 775.0 564 70.7
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 3.4e-221 771.9 567 71.4
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 1.7e-220 769.6 552 70.7
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.9e-220 768.8 566 71.0
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 6.5e-220 767.7 606 67.2
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 1.4e-219 766.5 549 71.0
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.9e-219 766.1 532 71.6
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 7.9e-218 760.8 632 64.1
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 5.1e-217 758.1 532 71.6
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 5.1e-217 758.1 561 68.4
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 8.2e-215 750.7 571 66.9
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 4.5e-213 745.0 513 71.5
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 1.9e-208 729.6 454 80.6
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 3.1e-206 722.2 552 69.2
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 1.0e-204 717.2 564 65.1
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 1.4e-198 696.8 481 73.2
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.6e-194 683.3 554 64.3
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.5e-189 666.8 479 70.4
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 2.5e-187 659.4 565 59.8
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 2.5e-187 659.4 515 64.7
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 2.4e-174 616.3 552 56.7
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.3e-172 610.5 415 74.0
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 1.3e-172 610.5 557 56.6
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 1.8e-166 590.1 359 84.1
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 3.9e-156 555.8 406 69.0
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 8.6e-156 554.7 406 68.7
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 9.5e-155 551.2 406 68.5
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 6.2e-154 548.5 354 77.1
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 3.5e-141 506.1 560 48.8
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 4.1e-134 482.6 330 75.2
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 1.1e-131 474.6 537 46.7
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 4.9e-119 432.6 335 68.1
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 3.2e-118 429.9 272 79.0
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 7.2e-94 349.0 220 76.4
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 3.7e-90 336.7 200 89.5
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.8e-81 307.8 195 74.4
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 1.1e-62 245.4 228 57.9
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 5.7e-51 206.5 152 67.8
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.4e-49 201.8 141 70.9
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 2.0e-48 198.0 147 68.7
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 4.4e-43 180.3 117 74.4
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 2.2e-42 177.9 189 56.6
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 3.6e-29 134.0 127 64.6
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 2.3e-23 114.8 141 50.4
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 5.6e-22 110.2 109 54.1
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 6.2e-21 106.7 88 58.0
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 1.1e-17 95.9 87 59.8
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 1.1e-17 95.9 83 57.8
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 1.9e-17 95.1 76 67.1
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 2.7e-08 64.7 112 35.7
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 4.6e-08 63.9 53 54.7
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 1.0e-07 62.8 338 23.1


User provided reference genes

Program Settings