Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 6.8e-96 354.0 177 100.0
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 2.3e-83 312.4 177 87.0
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 7.2e-82 307.4 177 86.4
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 8.9e-80 300.4 176 86.9
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 3.4e-79 298.5 169 87.0
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 3.4e-79 298.5 177 84.7
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 5.7e-79 297.7 176 84.1
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 7.5e-79 297.4 177 83.6
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 9.8e-79 297.0 177 85.9
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 9.8e-79 297.0 176 84.1
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 9.8e-79 297.0 176 84.1
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.3e-78 296.6 169 87.0
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.7e-78 296.2 178 83.7
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 4.9e-78 294.7 177 81.9
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 6.3e-78 294.3 180 80.6
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.1e-77 293.5 181 82.3
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 1.1e-77 293.5 169 85.8
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 1.4e-77 293.1 177 82.5
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.4e-77 293.1 177 81.9
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 2.4e-77 292.4 182 79.1
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 3.2e-77 292.0 177 81.4
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 3.2e-77 292.0 175 81.7
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 7.0e-77 290.8 178 80.3
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 9.2e-77 290.4 175 81.1
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 1.2e-76 290.0 169 84.6
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 1.6e-76 289.7 180 79.4
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.6e-76 289.7 177 80.8
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 1.6e-76 289.7 177 81.4
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 2.7e-76 288.9 165 86.1
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 7.8e-76 287.3 166 86.7
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.8e-76 287.3 177 81.9
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 7.8e-76 287.3 180 77.2
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 7.8e-76 287.3 179 79.3
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 1.3e-75 286.6 180 79.4
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 2.9e-75 285.4 180 77.2
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 5.0e-75 284.6 177 79.7
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 5.0e-75 284.6 177 80.8
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 5.0e-75 284.6 180 78.3
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 5.0e-75 284.6 180 78.3
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 5.0e-75 284.6 177 79.7
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.6e-75 284.3 177 80.2
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.6e-75 284.3 177 80.2
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 1.9e-74 282.7 200 73.5
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 7.3e-74 280.8 169 82.8
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 2.8e-73 278.9 177 78.0
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 6.1e-73 277.7 161 83.2
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 8.0e-73 277.3 184 75.0
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 1.0e-72 276.9 179 77.1
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 1.0e-72 276.9 159 84.3
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 1.4e-72 276.6 176 78.4
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 3.1e-72 275.4 180 77.2
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 3.1e-72 275.4 180 77.2
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 4.0e-72 275.0 179 76.0
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 8.9e-72 273.9 179 76.0
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 8.9e-72 273.9 179 76.0
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 8.9e-72 273.9 184 75.5
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 1.2e-71 273.5 179 76.0
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 1.2e-71 273.5 161 81.4
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 1.5e-71 273.1 176 74.4
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 2.0e-71 272.7 176 76.7
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 4.4e-71 271.6 176 76.7
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 7.5e-71 270.8 161 80.1
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.3e-70 270.0 175 77.1
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.7e-70 269.6 159 82.4
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 2.2e-70 269.2 186 74.2
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 2.2e-70 269.2 174 77.6
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 2.2e-70 269.2 179 76.5
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.9e-70 268.9 180 75.6
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 2.9e-70 268.9 180 73.9
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 3.7e-70 268.5 158 82.3
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 4.9e-70 268.1 159 81.8
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 8.3e-70 267.3 164 81.1
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 1.1e-69 266.9 158 82.3
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 1.4e-69 266.5 156 84.6
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 1.9e-69 266.2 160 81.9
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 1.9e-69 266.2 160 81.9
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 4.1e-69 265.0 189 70.9
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 4.1e-69 265.0 174 75.9
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 7.0e-69 264.2 169 77.5
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 7.0e-69 264.2 175 73.7
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 7.0e-69 264.2 177 72.3
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 9.2e-69 263.8 174 75.9
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 9.2e-69 263.8 160 80.0
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 9.2e-69 263.8 175 74.3
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 9.2e-69 263.8 177 72.3
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 1.6e-68 263.1 159 81.8
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 2.0e-68 262.7 159 80.5
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.0e-68 262.7 159 80.5
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 2.7e-68 262.3 159 79.2
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 2.7e-68 262.3 162 78.4
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 6.0e-68 261.2 159 79.9
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 2.3e-67 259.2 167 75.4
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 2.3e-67 259.2 180 72.2
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.3e-67 259.2 172 73.3
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 8.6e-67 257.3 168 76.2
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 1.1e-66 256.9 145 86.9
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 1.9e-66 256.1 168 76.2
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.9e-66 256.1 145 86.2
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 2.5e-66 255.8 175 71.4
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 7.3e-66 254.2 171 75.4
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 7.3e-66 254.2 175 70.9
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 1.2e-65 253.4 176 69.9
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 4.7e-65 251.5 179 71.5
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 1.8e-64 249.6 145 82.1
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.2e-63 246.9 142 84.5
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 2.6e-63 245.7 146 82.9
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 7.5e-63 244.2 137 89.1
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 9.8e-63 243.8 137 87.6
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.3e-62 243.4 148 81.1
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.1e-61 240.4 140 82.1
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 2.4e-61 239.2 158 74.1
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 7.1e-61 237.7 172 69.2
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.2e-60 236.9 177 71.2
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.6e-60 236.5 173 71.1
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 2.1e-60 236.1 159 74.8
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 6.6e-59 231.1 166 68.7
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 1.4e-53 213.4 167 59.9
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 4.6e-52 208.4 162 66.7
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 7.8e-52 207.6 135 78.5
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 1.9e-50 203.0 175 54.9
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.3e-50 202.2 155 67.7
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 7.6e-47 191.0 109 86.2
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 8.4e-46 187.6 117 81.2
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.2e-44 183.7 117 75.2
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 2.7e-44 182.6 110 78.2
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 2.7e-44 182.6 143 65.7
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 2.8e-41 172.6 150 56.0
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 2.8e-41 172.6 114 76.3
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 8.1e-41 171.0 126 67.5
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.9e-37 159.8 113 68.1
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.5e-34 150.2 127 63.0
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 1.9e-34 149.8 93 79.6
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 1.9e-34 149.8 185 49.2
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.3e-34 148.7 77 89.6
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.0e-32 142.1 120 63.3
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.0e-32 142.1 119 62.2
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 2.2e-30 136.3 82 79.3
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 8.4e-30 134.4 77 80.5
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 1.4e-29 133.7 93 71.0
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 5.4e-29 131.7 68 89.7
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 9.3e-29 131.0 77 81.8
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 5.6e-26 121.7 154 46.8
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 7.6e-23 111.3 120 55.0
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 7.1e-21 104.8 64 79.7
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.0e-20 101.7 77 66.2
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 9.6e-18 94.4 52 84.6
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 1.4e-16 90.5 66 66.7
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 2.9e-14 82.8 58 70.7
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 2.9e-14 82.8 64 59.4
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 1.7e-06 57.0 33 78.8


User provided reference genes

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