Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 1.4e-93 346.3 181 100.0
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 1.5e-45 186.8 184 63.0
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 1.8e-43 179.9 192 60.9
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 8.3e-41 171.0 188 58.0
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 1.1e-40 170.6 186 55.4
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 1.1e-40 170.6 186 55.4
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 1.1e-40 170.6 186 55.4
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 7.0e-40 167.9 191 53.4
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.0e-38 164.1 181 53.6
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.3e-38 163.7 179 55.3
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.7e-38 163.3 180 54.4
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 3.9e-38 162.2 187 53.5
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 2.5e-37 159.5 187 51.9
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 7.3e-37 157.9 191 53.4
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 1.4e-35 153.7 190 50.5
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 1.2e-34 150.6 187 52.9
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 1.5e-34 150.2 188 47.9
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 9.8e-34 147.5 187 52.9
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 4.9e-33 145.2 187 50.8
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 6.4e-33 144.8 180 50.0
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 1.1e-32 144.1 189 47.6
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 7.0e-32 141.4 180 48.3
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 7.0e-32 141.4 192 51.0
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 9.2e-32 141.0 182 52.2
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 9.2e-32 141.0 191 48.7
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 1.2e-31 140.6 186 51.1
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 1.2e-31 140.6 186 52.7
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 6.0e-31 138.3 190 47.4
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 7.8e-31 137.9 168 50.6
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.3e-30 137.1 190 50.0
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 1.3e-30 137.1 176 51.1
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 1.7e-30 136.7 190 48.4
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 2.3e-30 136.3 192 47.4
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 2.3e-30 136.3 188 48.4
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 3.0e-30 136.0 187 49.7
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 8.6e-30 134.4 191 48.7
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 1.1e-29 134.0 176 49.4
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 1.1e-29 134.0 185 49.2
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.1e-29 134.0 204 48.5
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 1.5e-29 133.7 188 48.4
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 1.9e-29 133.3 188 46.3
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.5e-29 132.9 189 47.6
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 3.3e-29 132.5 179 48.0
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 3.3e-29 132.5 191 46.6
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 3.3e-29 132.5 174 50.6
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 4.3e-29 132.1 176 50.6
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 4.3e-29 132.1 188 48.9
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 4.3e-29 132.1 191 45.5
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 5.6e-29 131.7 186 47.8
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 9.5e-29 131.0 190 49.5
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 1.2e-28 130.6 191 45.0
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 1.2e-28 130.6 180 47.2
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 1.6e-28 130.2 193 44.0
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 3.6e-28 129.0 189 47.1
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.6e-28 129.0 194 46.4
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 3.6e-28 129.0 191 46.1
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 4.7e-28 128.6 188 48.4
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 6.2e-28 128.3 185 50.3
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 8.0e-28 127.9 189 50.3
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.1e-27 127.5 181 47.5
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.1e-27 127.5 181 47.5
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 1.4e-27 127.1 176 49.4
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 2.3e-27 126.3 197 47.2
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 2.3e-27 126.3 189 46.0
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 6.8e-27 124.8 189 46.6
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 6.8e-27 124.8 180 48.3
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 6.8e-27 124.8 188 49.5
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 2.6e-26 122.9 189 47.6
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 2.6e-26 122.9 188 44.1
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.4e-26 122.5 207 44.9
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 4.4e-26 122.1 189 47.1
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 4.4e-26 122.1 176 47.2
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 4.4e-26 122.1 188 46.8
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 4.4e-26 122.1 183 45.4
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 2.9e-25 119.4 180 46.7
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 2.9e-25 119.4 188 44.7
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 2.9e-25 119.4 191 45.0
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 2.9e-25 119.4 181 48.6
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 6.4e-25 118.2 183 45.9
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 6.4e-25 118.2 184 45.1
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 8.3e-25 117.9 180 46.1
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 1.1e-24 117.5 189 46.0
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 1.4e-24 117.1 185 44.9
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 1.4e-24 117.1 182 45.6
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.4e-24 116.3 166 47.6
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 2.4e-24 116.3 177 45.2
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 3.2e-24 115.9 187 43.9
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 3.2e-24 115.9 166 47.0
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 7.0e-24 114.8 183 42.1
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 9.2e-24 114.4 183 44.8
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 4.6e-23 112.1 180 43.9
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 4.6e-23 112.1 183 42.6
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 4.6e-23 112.1 181 44.8
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 6.0e-23 111.7 166 46.4
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 1.0e-22 110.9 183 44.8
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 3.9e-22 109.0 179 42.5
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 8.6e-22 107.8 179 41.3
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 8.6e-22 107.8 179 41.3
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 8.6e-22 107.8 179 41.3
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 1.5e-21 107.1 182 44.0
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 2.5e-21 106.3 179 41.3
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 2.5e-21 106.3 177 42.9
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 9.5e-21 104.4 189 44.4
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 9.5e-21 104.4 186 43.0
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 1.2e-20 104.0 198 39.9
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.1e-20 103.2 191 42.4
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 2.1e-20 103.2 188 39.9
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 6.2e-20 101.7 181 40.9
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 6.2e-20 101.7 102 58.8
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 6.2e-20 101.7 104 52.9
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.0e-18 96.7 178 42.7
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 3.4e-18 95.9 180 40.0
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 5.8e-18 95.1 173 41.0
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 5.8e-18 95.1 151 43.0
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 7.5e-18 94.7 131 47.3
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 1.7e-17 93.6 225 37.8
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 1.6e-15 87.0 132 45.5
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 2.1e-15 86.7 185 40.5
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 3.5e-15 85.9 128 44.5
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 4.6e-15 85.5 186 39.8
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 1.7e-14 83.6 75 58.7
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 2.5e-13 79.7 82 56.1
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 3.6e-12 75.9 164 38.4
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 8.1e-12 74.7 106 42.5
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 8.1e-12 74.7 106 42.5
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 1.4e-11 73.9 161 36.6
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.0e-11 72.4 180 35.0
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 1.2e-10 70.9 134 39.6
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 7.6e-10 68.2 152 37.5
unitig_37.g12674 Utricularia gibba HOM05D004998 ORTHO05D006104 9.9e-10 67.8 140 37.9
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 3.8e-09 65.9 147 37.4
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 8.4e-09 64.7 184 35.9
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 3.2e-08 62.8 139 34.5
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 4.2e-08 62.4 192 28.6
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 4.6e-07 58.9 99 42.4
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 8.7e-06 54.7 60 51.7


User provided reference genes

Program Settings