Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1903.3 1007 100.0
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1558.9 1019 81.7
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1511.5 1012 80.1
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1509.6 1015 79.3
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1429.5 1015 74.6
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1424.5 1028 74.4
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1424.5 1013 74.0
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1392.5 1019 72.2
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1389.4 997 73.8
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1374.8 1015 72.0
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1359.4 1030 69.4
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1350.9 1036 69.4
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1350.9 1025 69.3
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1345.5 1013 71.0
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1344.3 1029 70.3
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1343.9 1016 70.2
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1341.6 1022 69.2
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1340.5 1019 69.2
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1338.9 1021 69.6
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1338.9 1025 69.1
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1337.0 1026 68.0
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1335.1 1022 70.1
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1332.8 1014 70.6
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1330.9 1015 69.8
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1328.9 1026 70.0
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1328.9 1013 70.7
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1324.3 1018 68.4
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1324.3 1018 68.4
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1320.4 1018 68.2
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1319.3 1019 68.7
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1317.0 1026 69.0
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1316.6 1026 69.1
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1315.4 1020 68.9
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1314.3 1027 68.3
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1314.3 1015 69.1
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1312.7 1022 69.1
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1310.8 1022 67.5
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1310.4 1034 68.7
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1305.4 1024 67.8
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1301.6 1016 66.9
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1300.4 1027 68.3
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1296.6 1053 67.3
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1296.6 1017 67.5
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1294.3 1018 67.3
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1294.3 985 69.2
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1293.5 1001 68.5
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1293.1 1023 67.9
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1290.4 988 68.3
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1289.6 1016 67.5
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1288.5 971 69.8
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1288.1 1061 66.3
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1286.6 1013 66.8
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1280.4 971 69.2
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1277.7 1027 66.7
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1276.2 1024 66.1
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1275.0 1018 68.1
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 0.0e+00 1274.2 1013 67.5
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1272.3 1022 65.7
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1272.3 1025 66.0
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1269.6 988 68.2
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1266.5 1038 66.3
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1266.1 983 66.6
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1261.9 991 66.5
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1261.1 1015 66.0
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1260.4 1013 66.8
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1256.5 988 67.0
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1255.0 1017 66.6
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1253.0 1081 62.9
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1247.6 1021 64.9
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1245.3 1016 64.3
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1245.0 1021 64.3
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1244.6 1016 67.1
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1243.4 1019 64.5
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1242.3 1017 64.2
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1239.9 937 68.7
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1238.8 1017 64.1
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1238.4 1019 64.0
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1238.0 1019 64.3
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1237.6 1051 63.3
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1237.2 985 65.2
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1235.7 984 66.5
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1234.2 1017 64.2
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1232.2 1042 63.4
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1231.1 1015 63.8
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1224.5 1007 63.8
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1224.2 1007 63.8
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 0.0e+00 1211.8 1022 63.5
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 0.0e+00 1207.2 946 65.9
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1204.5 1062 61.0
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1203.0 1012 63.8
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1200.3 1027 62.7
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1199.1 1025 63.0
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1198.7 942 66.0
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1192.9 956 64.0
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1192.9 954 65.1
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1186.4 1014 63.3
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1177.2 1048 61.1
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 0.0e+00 1174.1 1075 60.0
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1172.1 1013 62.4
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 0.0e+00 1143.6 1032 60.8
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 0.0e+00 1134.8 901 66.6
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 0.0e+00 1133.2 1020 60.0
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 0.0e+00 1132.9 785 76.1
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 0.0e+00 1085.5 788 72.6
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1083.9 794 70.4
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1083.9 851 66.5
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 5.1e-297 1024.6 833 65.9
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 1.2e-285 986.9 975 53.9
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 2.2e-284 982.6 947 55.6
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 8.4e-284 980.7 981 51.6
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 2.4e-283 979.2 983 53.2
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 7.3e-280 967.6 741 71.3
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 6.2e-279 964.5 704 72.3
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 1.1e-267 927.2 649 76.0
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 1.9e-267 926.4 975 52.2
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 4.2e-235 818.9 613 71.5
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.8e-233 813.5 622 70.9
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 5.3e-230 802.0 989 45.5
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 2.5e-211 740.0 631 65.1
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 2.7e-205 719.9 972 47.3
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 2.1e-202 710.3 564 62.8
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.8e-198 697.2 518 70.3
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.5e-195 687.6 692 52.0
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 7.3e-187 658.7 598 58.5
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 3.5e-165 586.6 1013 40.4
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.1e-161 575.1 587 53.2
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 8.2e-146 522.3 611 47.6
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 1.1e-139 501.9 1018 33.5
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 4.5e-136 490.0 573 51.7
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 6.1e-133 479.6 955 32.4
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 2.1e-125 454.5 282 84.0
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 8.2e-122 442.6 399 56.9
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 3.8e-119 433.7 570 50.9
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 1.9e-118 431.4 347 66.6
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 4.7e-117 426.8 958 30.4
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 1.7e-106 391.7 276 73.2
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 4.8e-106 390.2 358 57.8
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 2.7e-104 384.4 382 57.9
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 2.2e-103 381.3 563 43.2
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 4.2e-102 377.1 297 66.0
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 9.4e-102 375.9 282 67.0
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.2e-98 364.8 404 48.0
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 1.2e-91 342.4 266 67.7
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 6.3e-90 336.7 277 65.0
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.9e-87 327.8 558 40.1
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 1.6e-85 322.0 409 49.4
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.3e-79 301.6 299 57.9
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.9e-74 284.6 221 66.5
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 8.3e-74 283.1 592 35.1
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 7.0e-73 280.0 424 43.4
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 6.8e-68 263.5 242 61.6
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 4.1e-65 254.2 245 54.7
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 1.6e-64 252.3 189 68.8
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 7.8e-64 250.0 262 58.4
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 5.8e-59 233.8 283 45.9
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 6.4e-58 230.3 219 52.5
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 4.6e-56 224.2 225 56.0
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 7.8e-56 223.4 205 63.4
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 1.3e-53 216.1 154 71.4
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.6e-51 208.4 172 65.7
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.1e-48 198.7 163 65.6
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 6.6e-47 193.7 134 71.6
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 1.1e-44 186.4 426 35.9
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 7.6e-43 180.3 414 35.0
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 1.1e-33 149.8 229 40.2
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 2.7e-32 145.2 125 63.2
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 1.9e-30 139.0 140 54.3
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 3.7e-29 134.8 210 46.2
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 2.4e-28 132.1 92 71.7
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 2.0e-27 129.0 153 47.1
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 1.2e-24 119.8 101 61.4
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 3.5e-24 118.2 74 73.0
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 3.5e-24 118.2 74 73.0
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 1.8e-23 115.9 119 49.6
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 1.3e-21 109.8 164 43.3
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 1.6e-21 109.4 408 29.4
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 2.9e-18 98.6 172 37.8
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.4e-17 96.3 108 49.1
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 3.6e-16 91.7 163 38.7
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 3.9e-15 88.2 72 62.5
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 2.6e-06 58.9 53 52.8


User provided reference genes

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