Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18519 Avicennia marina HOM05D005992 ORTHO05D007476 4.8e-82 307.8 154 100.0
Migut.D00757 Erythranthe guttata HOM05D005992 ORTHO05D007476 1.5e-59 233.0 149 79.2
SalBow6G0883 Salvia bowleyana HOM05D005992 ORTHO05D007476 4.3e-54 214.9 167 69.5
SGA_v2.0_scaffold8G04484 Striga asiatica HOM05D005992 ORTHO05D007476 8.0e-53 210.7 154 71.4
SalBow2G0316 Salvia bowleyana HOM05D005992 ORTHO05D007476 2.9e-50 202.2 197 58.4
Oeu058218.1 Olea europaea HOM05D005992 ORTHO05D007476 6.0e-48 194.5 154 64.9
Cc01_g15730 Coffea canephora HOM05D005992 ORTHO05D007476 1.3e-42 176.8 141 66.0
Peaxi162Scf00390g00125 Petunia axillaris HOM05D005992 ORTHO05D007476 6.4e-34 147.9 154 57.1
CAN.G874.50 Capsicum annuum HOM05D005992 ORTHO05D007476 2.4e-33 146.0 153 56.9
Nitab4.5_0008751g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 2.4e-33 146.0 153 56.9
Nitab4.5_0001348g0200 Nicotiana tabacum HOM05D005992 ORTHO05D007476 4.1e-33 145.2 153 56.9
Nitab4.5_0009028g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 9.2e-33 144.1 155 56.8
Nitab4.5_0005967g0050 Nicotiana tabacum HOM05D005992 ORTHO05D007476 3.5e-32 142.1 155 55.5
PGSC0003DMG400027679 Solanum tuberosum HOM05D005992 ORTHO05D007476 2.3e-31 139.4 153 56.2
Sopen06g034190 Solanum pennellii HOM05D005992 ORTHO05D007476 1.1e-30 137.1 153 54.9
HanXRQChr08g0230801 Helianthus annuus HOM05D005992 ORTHO05D007476 1.5e-30 136.7 154 51.9
Dinv28773 Davidia involucrata HOM05D005992 ORTHO05D007476 3.3e-30 135.6 141 53.2
Hma1.2p1_0161F.1_g071860 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 1.6e-29 133.3 141 52.5
CSS0023701 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 2.1e-29 132.9 159 50.3
CSS0036227 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 2.1e-29 132.9 159 50.3
unitig_60.g25570 Utricularia gibba HOM05D005992 ORTHO05D007476 2.8e-29 132.5 156 52.6
Solyc06g082830.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 4.0e-28 128.6 153 54.2
Lsat_1_v5_gn_9_15721 Lactuca sativa HOM05D005992 ORTHO05D007476 8.9e-28 127.5 152 51.3
Cpa.g.sc8.7 Carica papaya HOM05D005992 ORTHO05D007476 3.4e-27 125.6 155 49.7
Hma1.2p1_0834F.1_g225730 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 5.8e-27 124.8 159 46.5
GSVIVG01004128001 Vitis vinifera HOM05D005992 ORTHO05D007476 5.8e-27 124.8 141 53.9
Manes.13G058400 Manihot esculenta HOM05D005992 ORTHO05D007476 1.7e-26 123.2 154 52.6
FAN13G0560 Fragaria x ananassa HOM05D005992 ORTHO05D007476 6.4e-26 121.3 151 51.0
FAN08G0048 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.1e-25 120.6 151 50.3
FAN04G1498 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.4e-25 120.2 151 49.7
Prupe.8G267200 Prunus persica HOM05D005992 ORTHO05D007476 2.4e-25 119.4 153 50.3
FvH4_5g18680 Fragaria vesca HOM05D005992 ORTHO05D007476 3.2e-25 119.0 151 49.7
Glyma.06G002700 Glycine max HOM05D005992 ORTHO05D007476 3.2e-25 119.0 144 51.4
Oeu064700.1 Olea europaea HOM05D005992 ORTHO05D007476 3.2e-25 119.0 88 68.2
FAN18G0660 Fragaria x ananassa HOM05D005992 ORTHO05D007476 5.4e-25 118.2 151 49.7
Potri.014G172600 Populus trichocarpa HOM05D005992 ORTHO05D007476 5.4e-25 118.2 151 52.3
CANSAT11G0965 Cannabis sativa HOM05D005992 ORTHO05D007476 9.3e-25 117.5 150 52.7
ECA247G1400 Erigeron canadensis HOM05D005992 ORTHO05D007476 2.7e-24 115.9 149 49.7
Nn7g37421 Nelumbo nucifera HOM05D005992 ORTHO05D007476 2.7e-24 115.9 132 50.8
RcHm_v2.0_Chr7g0176831 Rosa chinensis HOM05D005992 ORTHO05D007476 3.5e-24 115.5 152 49.3
Medtr3g118100 Medicago truncatula HOM05D005992 ORTHO05D007476 4.6e-24 115.2 154 46.1
Psat5g001840 Pisum sativum HOM05D005992 ORTHO05D007476 6.0e-24 114.8 149 48.3
VMungo1309G0397 Vigna mungo HOM05D005992 ORTHO05D007476 6.0e-24 114.8 135 54.8
Phvul.009G118300 Phaseolus vulgaris HOM05D005992 ORTHO05D007476 1.7e-23 113.2 131 53.4
QL09p044779 Quercus lobata HOM05D005992 ORTHO05D007476 2.3e-23 112.8 146 47.9
Manes.12G055803 Manihot esculenta HOM05D005992 ORTHO05D007476 3.0e-23 112.5 142 50.7
CiPaw.13G059000 Carya illinoinensis HOM05D005992 ORTHO05D007476 3.9e-23 112.1 151 48.3
Sc10g0006540 Simmondsia chinensis HOM05D005992 ORTHO05D007476 3.9e-23 112.1 140 49.3
MD03G1298800 Malus domestica HOM05D005992 ORTHO05D007476 5.1e-23 111.7 153 48.4
Glyma.04G002700 Glycine max HOM05D005992 ORTHO05D007476 1.5e-22 110.2 126 53.2
Ciclev10016954m.g Citrus clementina HOM05D005992 ORTHO05D007476 7.3e-22 107.8 156 48.1
PGR044G1143 Punica granatum HOM05D005992 ORTHO05D007476 7.3e-22 107.8 155 47.1
Eucgr.K02345 Eucalyptus grandis HOM05D005992 ORTHO05D007476 1.3e-21 107.1 155 45.2
vmacro14669 Vaccinium macrocarpon HOM05D005992 ORTHO05D007476 1.3e-21 107.1 205 36.6
AUR62017763 Chenopodium quinoa HOM05D005992 ORTHO05D007476 2.1e-21 106.3 141 46.8
Lalb_Chr11g0061201 Lupinus albus HOM05D005992 ORTHO05D007476 4.8e-21 105.1 134 46.3
Gohir.D11G152400 Gossypium hirsutum HOM05D005992 ORTHO05D007476 8.1e-21 104.4 158 46.8
PSO357G0365 Papaver somniferum HOM05D005992 ORTHO05D007476 1.1e-20 104.0 143 49.0
Gohir.A11G146200 Gossypium hirsutum HOM05D005992 ORTHO05D007476 1.4e-20 103.6 158 46.8
Gorai.007G163000 Gossypium raimondii HOM05D005992 ORTHO05D007476 1.4e-20 103.6 158 46.8
arahy.Tifrunner.gnm1.ann1.DJH8FA Arachis hypogaea HOM05D005992 ORTHO05D007476 1.8e-20 103.2 161 45.3
EL10Ac9g23025 Beta vulgaris HOM05D005992 ORTHO05D007476 2.4e-20 102.8 141 46.1
Ca_15291_v3 Cicer arietinum L. HOM05D005992 ORTHO05D007476 3.1e-20 102.4 163 42.3
DCAR_018600 Daucus carota HOM05D005992 ORTHO05D007476 4.0e-20 102.1 175 40.0
Duzib138G0279 Durio zibethinus HOM05D005992 ORTHO05D007476 4.0e-20 102.1 159 45.9
PSO170G4201 Papaver somniferum HOM05D005992 ORTHO05D007476 1.2e-19 100.5 134 48.5
Duzib133G0028 Durio zibethinus HOM05D005992 ORTHO05D007476 2.0e-19 99.8 153 45.1
Ah.04g163410 Amaranthus hybridus HOM05D005992 ORTHO05D007476 3.4e-19 99.0 140 44.3
Rhsim01G0246100 Rhododendron simsii HOM05D005992 ORTHO05D007476 4.4e-19 98.6 208 36.5
COL.COLO4_19718 Corchorus olitorius HOM05D005992 ORTHO05D007476 1.3e-18 97.1 156 47.4
Thecc.01G203400 Theobroma cacao HOM05D005992 ORTHO05D007476 2.2e-18 96.3 157 43.9
TWI75G1816 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 2.9e-18 95.9 155 40.6
Lj1g0017920 Lotus japonicus HOM05D005992 ORTHO05D007476 6.4e-18 94.7 149 45.0
Atru.chr6.3466 Acer truncatum HOM05D005992 ORTHO05D007476 1.9e-17 93.2 148 45.9
TWI36G0694 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 2.4e-17 92.8 155 40.0
Hma1.2p1_1756F.1_g301045 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 7.1e-17 91.3 106 49.1
TWI36G1335 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 7.1e-17 91.3 155 39.4
THA.LOC104822452 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 9.3e-17 90.9 129 45.0
CiPaw.14G047400 Carya illinoinensis HOM05D005992 ORTHO05D007476 1.6e-16 90.1 131 44.3
Os02g0609400 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 2.7e-16 89.4 125 45.6
TAR362G0776 Trochodendron aralioides HOM05D005992 ORTHO05D007476 7.9e-16 87.8 104 50.0
Lj1C108T9 Lonicera japonica HOM05D005992 ORTHO05D007476 1.3e-15 87.0 90 51.1
MBI07_g44661_MAGBIO Magnolia biondii HOM05D005992 ORTHO05D007476 2.3e-15 86.3 116 45.7
Aqoxy2G04184 Aquilegia oxysepala HOM05D001906 ORTHO05D002083 3.0e-15 85.9 145 38.6
Zm00001eb246760 Zea mays HOM05D005992 ORTHO05D007476 3.0e-15 85.9 114 45.6
arahy.Tifrunner.gnm1.ann1.B4TR6Y Arachis hypogaea HOM05D005992 ORTHO05D007476 3.9e-15 85.5 155 41.9
PGSC0003DMG400020300 Solanum tuberosum HOM05D005992 ORTHO05D007476 5.1e-15 85.1 100 52.0
CDE07G1966 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 8.7e-15 84.3 113 45.1
HPP92_004514 Vanilla planifolia HOM05D005992 ORTHO05D007476 2.5e-14 82.8 122 43.4
Sabra14G0132200 Salix brachista HOM05D005992 ORTHO05D007476 4.3e-14 82.0 196 36.2
CDE04G1688 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 9.6e-14 80.9 120 43.3
TWI18G0378 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 9.6e-14 80.9 139 38.8
THA.LOC104819021 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 4.8e-13 78.6 129 41.1
TPR.G38510 Trifolium pratense HOM05D005992 ORTHO05D007476 1.4e-12 77.0 114 41.2
AUR62032915 Chenopodium quinoa HOM05D005992 ORTHO05D007476 3.4e-11 72.4 103 41.7
Carub.0008s0791 Capsella rubella HOM05D005992 ORTHO05D007476 9.9e-11 70.9 141 38.3
ATR0743G072 Amborella trichopoda HOM05D005992 ORTHO05D007476 2.2e-10 69.7 117 36.8
Sopen09g012660 Solanum pennellii HOM05D005992 ORTHO05D007476 2.2e-10 69.7 76 46.1
Os02g0599500 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 8.4e-10 67.8 92 43.5
AL8G21060 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 9.3e-09 64.3 138 35.5
CARHR183920 Cardamine hirsuta HOM05D005992 ORTHO05D007476 1.6e-08 63.5 138 36.2
Sp3g06520 Schrenkiella parvula HOM05D005992 ORTHO05D007476 2.1e-08 63.2 120 39.2
BraA05t22792Z Brassica rapa HOM05D005992 ORTHO05D007476 3.5e-08 62.4 125 39.2
Thhalv10021713m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 1.5e-06 57.0 138 36.2


User provided reference genes

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