Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18514 Avicennia marina HOM05D006455 ORTHO05D008098 4.3e-300 1033.9 516 100.0
Migut.D00764 Erythranthe guttata HOM05D006455 ORTHO05D008098 1.6e-217 759.6 516 74.6
SGA_v2.0_scaffold158G37512 Striga asiatica HOM05D006455 ORTHO05D008098 4.7e-206 721.5 539 68.8
GSVIVG01001915001 Vitis vinifera HOM05D006455 ORTHO05D008098 1.9e-178 629.8 517 64.0
Cc04_g10320 Coffea canephora HOM05D006455 ORTHO05D008098 2.3e-176 622.9 514 60.7
Cfa012584 Carpinus fangiana HOM05D006455 ORTHO05D008098 2.6e-172 609.4 518 61.2
TAR362G0985 Trochodendron aralioides HOM05D006455 ORTHO05D008098 2.9e-171 605.9 516 61.4
Haze_08072 Corylus avellana HOM05D006455 ORTHO05D008098 2.7e-169 599.4 518 60.4
Manes.12G057502 Manihot esculenta HOM05D006455 ORTHO05D008098 3.6e-166 589.0 516 58.9
Manes.12G057904 Manihot esculenta HOM05D006455 ORTHO05D008098 4.7e-166 588.6 516 58.9
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.4e-165 587.0 521 57.2
Lj1A106T21 Lonicera japonica HOM05D006455 ORTHO05D008098 4.0e-165 585.5 498 62.9
Nitab4.5_0000077g0170 Nicotiana tabacum HOM05D006455 ORTHO05D008098 2.2e-163 579.7 511 59.3
Sopen09g013040 Solanum pennellii HOM05D006455 ORTHO05D008098 3.8e-163 578.9 515 58.3
Gorai.007G161800 Gossypium raimondii HOM05D006455 ORTHO05D008098 8.4e-163 577.8 514 57.8
Nitab4.5_0006514g0010 Nicotiana tabacum HOM05D006455 ORTHO05D008098 2.4e-162 576.2 511 58.1
Manes.12G057700 Manihot esculenta HOM05D006455 ORTHO05D008098 3.2e-162 575.9 516 57.9
Manes.12G057901 Manihot esculenta HOM05D006455 ORTHO05D008098 3.2e-162 575.9 516 57.9
Gohir.A11G144500 Gossypium hirsutum HOM05D006455 ORTHO05D008098 2.7e-161 572.8 514 57.4
Rhsim13G0055500 Rhododendron simsii HOM05D006455 ORTHO05D008098 3.9e-160 568.9 521 56.6
CiPaw.12G071600 Carya illinoinensis HOM05D006455 ORTHO05D008098 8.7e-160 567.8 516 57.6
Thecc.01G205700 Theobroma cacao HOM05D006455 ORTHO05D008098 5.6e-159 565.1 515 56.3
Ciclev10014895m.g Citrus clementina HOM05D006455 ORTHO05D008098 3.6e-158 562.4 521 56.8
TWI75G0274 Tripterygium wilfordii HOM05D006455 ORTHO05D008098 4.8e-158 562.0 513 56.9
Atru.chr6.3495 Acer truncatum HOM05D006455 ORTHO05D008098 2.9e-155 552.7 518 57.1
CsaV3_3G001300 Cucumis sativus L. HOM05D006455 ORTHO05D008098 9.3e-154 547.7 519 53.0
Nn1g09557 Nelumbo nucifera HOM05D006455 ORTHO05D008098 2.7e-153 546.2 522 56.3
AUR62028628 Chenopodium quinoa HOM05D006455 ORTHO05D008098 1.0e-152 544.3 520 53.7
HanXRQChr01g0014041 Helianthus annuus HOM05D006455 ORTHO05D008098 2.3e-152 543.1 513 54.8
RcHm_v2.0_Chr7g0228451 Rosa chinensis HOM05D006455 ORTHO05D008098 2.3e-152 543.1 513 55.6
Peaxi162Scf00315g00814 Petunia axillaris HOM05D006455 ORTHO05D008098 1.9e-151 540.0 493 57.6
CSS0002127 Camellia sinensis var. sinensis HOM05D006455 ORTHO05D008098 2.5e-151 539.7 429 62.5
ECA248G0009 Erigeron canadensis HOM05D006455 ORTHO05D008098 7.4e-151 538.1 515 54.8
HanXRQChr01g0013871 Helianthus annuus HOM05D006455 ORTHO05D008098 1.6e-150 537.0 513 54.8
Hund02815 Selenicereus undatus HOM05D006455 ORTHO05D008098 3.7e-150 535.8 510 54.1
Sc05g0001610 Simmondsia chinensis HOM05D006455 ORTHO05D008098 2.6e-148 529.6 509 53.8
AUR62008053 Chenopodium quinoa HOM05D006455 ORTHO05D008098 2.2e-147 526.6 515 51.8
Potri.014G174300 Populus trichocarpa HOM05D006455 ORTHO05D008098 2.2e-147 526.6 519 54.7
QL12p000818 Quercus lobata HOM05D006455 ORTHO05D008098 2.2e-147 526.6 505 56.6
Lsat_1_v5_gn_5_176300 Lactuca sativa HOM05D006455 ORTHO05D008098 4.9e-147 525.4 519 53.4
FvH4_5g32260 Fragaria vesca HOM05D006455 ORTHO05D008098 8.4e-147 524.6 508 53.3
CANSAT21G2240 Cannabis sativa HOM05D006455 ORTHO05D008098 1.4e-146 523.9 514 52.9
Prupe.2G049600 Prunus persica HOM05D006455 ORTHO05D008098 2.4e-146 523.1 514 53.1
FAN18G4165 Fragaria x ananassa HOM05D006455 ORTHO05D008098 2.7e-145 519.6 508 53.0
COL.COLO4_29922 Corchorus olitorius HOM05D006455 ORTHO05D008098 7.9e-145 518.1 525 53.1
FAN13G0315 Fragaria x ananassa HOM05D006455 ORTHO05D008098 1.3e-144 517.3 507 52.3
Eucgr.K02350 Eucalyptus grandis HOM05D006455 ORTHO05D008098 1.1e-143 514.2 516 53.9
Solyc09g020150.4 Solanum lycopersicum HOM05D006455 ORTHO05D008098 3.3e-143 512.7 493 55.6
Aqoxy2G04132 Aquilegia oxysepala HOM05D006455 ORTHO05D008098 1.6e-142 510.4 514 52.7
ClCG10G001240 Citrullus lanatus HOM05D006455 ORTHO05D008098 2.8e-142 509.6 494 54.9
MD02G1270700 Malus domestica HOM05D006455 ORTHO05D008098 2.4e-141 506.5 517 51.5
MELO3C013818.2 Cucumis melo HOM05D006455 ORTHO05D008098 2.6e-140 503.1 495 53.3
Sabra14G0133600 Salix brachista HOM05D006455 ORTHO05D008098 5.8e-140 501.9 525 52.6
Cpa.g.sc8.27 Carica papaya HOM05D006455 ORTHO05D008098 4.9e-139 498.8 497 54.3
PGR044G2428 Punica granatum HOM05D006455 ORTHO05D008098 1.9e-138 496.9 527 50.1
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 4.2e-138 495.7 489 52.8
Sed0000077 Sechium edule HOM05D006455 ORTHO05D008098 5.1e-136 488.8 494 52.8
Lalb_Chr16g0391751 Lupinus albus HOM05D006455 ORTHO05D008098 8.7e-136 488.0 512 51.0
Lj4g0021895 Lotus japonicus HOM05D006455 ORTHO05D008098 4.1e-133 479.2 512 50.2
Sp2g18700 Schrenkiella parvula HOM05D006455 ORTHO05D008098 5.0e-131 472.2 519 48.4
vmacro02844 Vaccinium macrocarpon HOM05D006455 ORTHO05D008098 6.5e-131 471.9 502 51.2
PSO210G7796 Papaver somniferum HOM05D006455 ORTHO05D008098 8.5e-131 471.5 512 50.0
AL8G21110 Arabidopsis lyrata HOM05D006455 ORTHO05D008098 1.9e-130 470.3 519 49.3
AT5G48340 Arabidopsis thaliana HOM05D006455 ORTHO05D008098 5.5e-130 468.8 513 49.9
PSO210G0904 Papaver somniferum HOM05D006455 ORTHO05D008098 7.2e-130 468.4 511 49.9
A06p39230 Brassica napus HOM05D006455 ORTHO05D008098 1.2e-129 467.6 515 49.1
BcaC06g30805 Brassica carinata HOM05D006455 ORTHO05D008098 1.6e-129 467.2 513 49.3
BolC7t44431H Brassica oleracea HOM05D006455 ORTHO05D008098 4.6e-129 465.7 518 48.3
BcaC06g30808 Brassica carinata HOM05D006455 ORTHO05D008098 1.0e-128 464.5 515 49.3
C07p39110 Brassica napus HOM05D006455 ORTHO05D008098 1.0e-128 464.5 515 49.3
BraA06t26837Z Brassica rapa HOM05D006455 ORTHO05D008098 1.0e-128 464.5 517 49.1
Ca_30349_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 1.0e-128 464.5 519 49.5
Psat4g108080 Pisum sativum HOM05D006455 ORTHO05D008098 6.7e-128 461.8 516 48.1
Glyma.16G105200 Glycine max HOM05D006455 ORTHO05D008098 1.1e-127 461.1 488 49.2
TPR.G31161 Trifolium pratense HOM05D006455 ORTHO05D008098 3.3e-127 459.5 516 49.2
CARHR183890 Cardamine hirsuta HOM05D006455 ORTHO05D008098 4.3e-127 459.1 510 48.6
arahy.Tifrunner.gnm1.ann1.E0JCGG Arachis hypogaea HOM05D006455 ORTHO05D008098 5.7e-127 458.8 496 50.2
Carub.0008s0792 Capsella rubella HOM05D006455 ORTHO05D008098 2.2e-126 456.8 516 48.6
Manes.12G057900 Manihot esculenta HOM05D006455 ORTHO05D008098 6.3e-126 455.3 491 50.3
VMungo0251G3325 Vigna mungo HOM05D006455 ORTHO05D008098 6.3e-126 455.3 515 48.7
arahy.Tifrunner.gnm1.ann1.U8H9H1 Arachis hypogaea HOM05D006455 ORTHO05D008098 1.4e-125 454.1 496 50.0
Actinidia23129 Actinidia chinensis HOM05D006455 ORTHO05D008098 5.3e-125 452.2 506 51.2
Manes.12G058105 Manihot esculenta HOM05D006455 ORTHO05D008098 1.7e-123 447.2 491 50.1
Gohir.D11G150900 Gossypium hirsutum HOM05D006455 ORTHO05D008098 3.2e-122 443.0 393 58.0
ATR0743G062 Amborella trichopoda HOM05D006455 ORTHO05D008098 4.2e-122 442.6 520 47.9
Aa31LG5G9090 Aethionema arabicum HOM05D006455 ORTHO05D008098 7.2e-122 441.8 508 47.4
Thhalv10003907m.g Eutrema salsugineum HOM05D006455 ORTHO05D008098 1.2e-121 441.0 493 50.5
Phvul.003G279900 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 1.6e-121 440.7 507 48.7
SHI10210 Sapria himalayana HOM05D006455 ORTHO05D008098 6.7e-120 435.3 516 49.0
Medtr8g071270 Medicago truncatula HOM05D006455 ORTHO05D008098 8.8e-120 434.9 495 48.9
Ca_22482_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 2.0e-119 433.7 497 49.5
DCAR_000439 Daucus carota HOM05D006455 ORTHO05D008098 4.8e-118 429.1 353 61.8
Ah.11g050710 Amaranthus hybridus HOM05D006455 ORTHO05D008098 7.7e-116 421.8 520 46.5
Os01g0897100 Oryza sativa ssp. japonica HOM05D006455 ORTHO05D008098 3.2e-114 416.4 512 46.9
EL10Ac5g10573 Beta vulgaris HOM05D006455 ORTHO05D008098 8.2e-110 401.7 397 53.7
Oeu030353.1 Olea europaea HOM05D006455 ORTHO05D008098 2.4e-109 400.2 331 66.8
MBI07_g34151_MAGBIO Magnolia biondii HOM05D006455 ORTHO05D008098 2.5e-106 390.2 464 50.6
Zm00001eb144730 Zea mays HOM05D006455 ORTHO05D008098 6.7e-104 382.1 494 45.3
Dinv07639 Davidia involucrata HOM05D006455 ORTHO05D008098 6.5e-99 365.5 390 51.0
SEGI_16096 Sequoiadendron giganteum HOM05D006455 ORTHO05D008098 5.5e-98 362.5 524 42.6
PGSC0003DMG402020303 Solanum tuberosum HOM05D006455 ORTHO05D008098 1.6e-92 344.4 346 54.3
HPP92_001271 Vanilla planifolia HOM05D006455 ORTHO05D008098 4.0e-88 329.7 336 49.4
Manes.12G058904 Manihot esculenta HOM05D006455 ORTHO05D008098 1.7e-86 324.3 271 59.8
Manes.12G057503 Manihot esculenta HOM05D006455 ORTHO05D008098 1.7e-67 261.2 197 61.9
Manes.12G057505 Manihot esculenta HOM05D006455 ORTHO05D008098 1.7e-67 261.2 197 61.9
HPP92_001254 Vanilla planifolia HOM05D006455 ORTHO05D008098 5.8e-63 246.1 220 55.9
CDE05G1197 Ceratophyllum demersum HOM05D006455 ORTHO05D008098 3.1e-56 223.8 160 63.1
Mapoly0109s0061 Marchantia polymorpha HOM05D006455 ORTHO05D008098 4.0e-56 223.4 524 29.6
Pp3c10_13370 Physcomitrium patens HOM05D006455 ORTHO05D008098 8.9e-56 222.2 534 31.3
SMO200G0077 Selaginella moellendorffii HOM05D006455 ORTHO05D008098 1.1e-53 215.3 489 31.3
AagrBONN_evm.TU.Sc2ySwM_228.5553 Anthoceros agrestis HOM05D006455 ORTHO05D008098 1.9e-45 188.0 525 27.0
Manes.12G057504 Manihot esculenta HOM05D006455 ORTHO05D008098 2.3e-43 181.0 195 53.8
Oeu030354.1 Olea europaea HOM05D006455 ORTHO05D008098 2.5e-34 151.0 116 65.5
CBR_g48756 Chara braunii HOM05D006455 ORTHO05D000497 1.6e-33 148.3 197 37.6
Manes.12G060108 Manihot esculenta HOM05D006455 ORTHO05D008098 1.8e-32 144.8 173 52.6
PGSC0003DMG400020304 Solanum tuberosum HOM05D006455 ORTHO05D008098 1.1e-29 135.6 116 57.8
Zm00001eb128100 Zea mays HOM05D006455 ORTHO05D008098 7.9e-28 129.4 143 49.0
Zm00001eb274660 Zea mays HOM05D006455 ORTHO05D008098 3.9e-27 127.1 143 48.3
EL10Ac5g10574 Beta vulgaris HOM05D006455 ORTHO05D008098 2.4e-24 117.9 116 50.0
Oeu003682.1 Olea europaea HOM05D006455 ORTHO05D008098 6.9e-24 116.3 118 55.1
Phvul.003G297266 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 5.5e-21 106.7 122 44.3
Zm00001eb128090 Zea mays HOM05D006455 ORTHO05D008098 4.3e-18 97.1 176 34.1
Cre03.g197250 Chlamydomonas reinhardtii HOM05D006455 ORTHO05D008098 5.3e-16 90.1 224 31.2
Actinidia33399 Actinidia chinensis HOM05D006455 ORTHO05D008098 5.7e-10 70.1 40 67.5


User provided reference genes

Program Settings