Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18490 Avicennia marina HOM05D007255 ORTHO05D009052 8.3e-137 490.3 243 100.0
SGA_v2.0_scaffold29G12102 Striga asiatica HOM05D007255 ORTHO05D009052 9.9e-106 387.1 236 79.7
Migut.D00726 Erythranthe guttata HOM05D007255 ORTHO05D009052 1.1e-104 383.6 245 80.0
SalBow6G0858 Salvia bowleyana HOM05D007255 ORTHO05D009052 8.4e-97 357.5 247 76.1
Oeu064665.2 Olea europaea HOM05D007255 ORTHO05D009052 3.0e-94 349.0 264 72.0
Nitab4.5_0000038g0080 Nicotiana tabacum HOM05D007255 ORTHO05D009052 3.1e-91 339.0 244 73.4
Nitab4.5_0005972g0030 Nicotiana tabacum HOM05D007255 ORTHO05D009052 1.5e-90 336.7 244 72.5
Cc01_g16200 Coffea canephora HOM05D007255 ORTHO05D009052 4.5e-90 335.1 226 76.1
Dinv10428 Davidia involucrata HOM05D007255 ORTHO05D009052 6.4e-89 331.3 244 70.1
Sopen09g020080 Solanum pennellii HOM05D007255 ORTHO05D009052 1.4e-88 330.1 245 71.8
Solyc09g058990.3 Solanum lycopersicum HOM05D007255 ORTHO05D009052 4.2e-88 328.6 245 71.0
Hma1.2p1_0161F.1_g071360 Hydrangea macrophylla HOM05D007255 ORTHO05D009052 7.9e-87 324.3 244 69.7
Thecc.01G211700 Theobroma cacao HOM05D007255 ORTHO05D009052 5.1e-86 321.6 241 68.5
Actinidia34549 Actinidia chinensis HOM05D007255 ORTHO05D009052 2.4e-83 312.8 241 68.5
Duzib211G0668 Durio zibethinus HOM05D007255 ORTHO05D009052 2.4e-83 312.8 240 67.5
RcHm_v2.0_Chr6g0282891 Rosa chinensis HOM05D007255 ORTHO05D009052 6.9e-83 311.2 244 68.0
FvH4_2g17870 Fragaria vesca HOM05D007255 ORTHO05D009052 9.0e-83 310.8 244 68.4
Potri.002G250500 Populus trichocarpa HOM05D007255 ORTHO05D009052 1.5e-82 310.1 242 65.7
FAN15G3515 Fragaria x ananassa HOM05D007255 ORTHO05D009052 2.0e-82 309.7 244 67.6
FAN27G1291 Fragaria x ananassa HOM05D007255 ORTHO05D009052 2.0e-82 309.7 244 67.6
COL.COLO4_28926 Corchorus olitorius HOM05D007255 ORTHO05D009052 2.6e-82 309.3 240 66.7
Rhsim01G0248900 Rhododendron simsii HOM05D007255 ORTHO05D009052 3.4e-82 308.9 244 66.4
Prupe.8G191100 Prunus persica HOM05D007255 ORTHO05D009052 4.5e-82 308.5 248 65.3
CiPaw.13G054800 Carya illinoinensis HOM05D007255 ORTHO05D009052 1.3e-81 307.0 244 65.6
FAN24G0557 Fragaria x ananassa HOM05D007255 ORTHO05D009052 1.3e-81 307.0 244 67.6
Sabra02G0190600 Salix brachista HOM05D007255 ORTHO05D009052 6.4e-81 304.7 238 66.0
Cpa.g.sc8.78 Carica papaya HOM05D007255 ORTHO05D009052 2.5e-80 302.8 239 67.4
Manes.13G054000 Manihot esculenta HOM05D007255 ORTHO05D009052 2.5e-80 302.8 223 66.8
Gorai.007G159200 Gossypium raimondii HOM05D007255 ORTHO05D009052 3.2e-80 302.4 242 66.5
TAR365G1235 Trochodendron aralioides HOM05D007255 ORTHO05D009052 4.2e-80 302.0 244 66.4
TWI18G1029 Tripterygium wilfordii HOM05D007255 ORTHO05D009052 5.5e-80 301.6 241 67.2
Aqoxy5G00040 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 9.3e-80 300.8 242 65.3
Gohir.A11G142200 Gossypium hirsutum HOM05D007255 ORTHO05D009052 2.1e-79 299.7 242 66.1
Gohir.D11G148500 Gossypium hirsutum HOM05D007255 ORTHO05D009052 2.7e-79 299.3 242 66.1
Hund02793 Selenicereus undatus HOM05D007255 ORTHO05D009052 4.6e-79 298.5 244 65.2
QL09p046138 Quercus lobata HOM05D007255 ORTHO05D009052 7.9e-79 297.7 243 62.1
Ca_23187_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 1.3e-78 297.0 220 67.7
Ca_30803_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 1.3e-78 297.0 220 67.7
Sc05g0001760 Simmondsia chinensis HOM05D007255 ORTHO05D009052 3.0e-78 295.8 246 63.8
Aa31LG5G18020 Aethionema arabicum HOM05D007255 ORTHO05D009052 1.9e-77 293.1 220 69.5
Phvul.010G031200 Phaseolus vulgaris HOM05D007255 ORTHO05D009052 1.9e-77 293.1 245 66.1
MD10G1152600 Malus domestica HOM05D007255 ORTHO05D009052 2.5e-77 292.7 228 68.4
THA.LOC104818995 Tarenaya hassleriana HOM05D007255 ORTHO05D009052 3.3e-77 292.4 238 63.9
PGR044G0433 Punica granatum HOM05D007255 ORTHO05D009052 4.3e-77 292.0 245 64.9
Lsat_1_v5_gn_5_178401 Lactuca sativa HOM05D007255 ORTHO05D009052 5.6e-77 291.6 244 64.8
vmacro14695 Vaccinium macrocarpon HOM05D007255 ORTHO05D009052 9.6e-77 290.8 222 68.0
TPR.G15196 Trifolium pratense HOM05D007255 ORTHO05D009052 1.6e-76 290.0 244 65.2
AT3G07440 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 2.8e-76 289.3 218 68.3
Thhalv10004862m.g Eutrema salsugineum HOM05D007255 ORTHO05D009052 3.7e-76 288.9 231 65.8
Atru.chr6.3551 Acer truncatum HOM05D007255 ORTHO05D009052 4.8e-76 288.5 246 60.2
Ah.11g051090 Amaranthus hybridus HOM05D007255 ORTHO05D009052 6.2e-76 288.1 240 65.0
AL3G18750 Arabidopsis lyrata HOM05D007255 ORTHO05D009052 6.2e-76 288.1 218 67.9
arahy.Tifrunner.gnm1.ann1.TV22BE Arachis hypogaea HOM05D007255 ORTHO05D009052 6.2e-76 288.1 250 63.2
Eucgr.K02090 Eucalyptus grandis HOM05D007255 ORTHO05D009052 6.2e-76 288.1 241 63.9
unitig_62.g23864 Utricularia gibba HOM05D007255 ORTHO05D009052 1.4e-75 287.0 251 62.2
Carub.0003s0699 Capsella rubella HOM05D007255 ORTHO05D009052 1.8e-75 286.6 218 67.4
A06p39120 Brassica napus HOM05D007255 ORTHO05D009052 4.0e-75 285.4 240 65.0
Ciclev10016497m.g Citrus clementina HOM05D007255 ORTHO05D009052 1.5e-74 283.5 227 64.3
Medtr8g011480 Medicago truncatula HOM05D007255 ORTHO05D009052 2.6e-74 282.7 207 69.6
BraA06t26826Z Brassica rapa HOM05D007255 ORTHO05D009052 3.4e-74 282.3 240 64.6
Sp2g18890 Schrenkiella parvula HOM05D007255 ORTHO05D009052 3.4e-74 282.3 235 64.7
C07p39220 Brassica napus HOM05D007255 ORTHO05D009052 4.5e-74 282.0 240 63.8
BolC7t44442H Brassica oleracea HOM05D007255 ORTHO05D009052 4.5e-74 282.0 240 63.8
CARHR082090 Cardamine hirsuta HOM05D007255 ORTHO05D009052 4.5e-74 282.0 219 65.8
Glyma.03G089600 Glycine max HOM05D007255 ORTHO05D009052 4.5e-74 282.0 245 63.3
ECA248G0740 Erigeron canadensis HOM05D007255 ORTHO05D009052 7.6e-74 281.2 244 62.3
CANSAT01G0773 Cannabis sativa HOM05D007255 ORTHO05D009052 1.3e-73 280.4 241 60.2
EL10Ac5g10635 Beta vulgaris HOM05D007255 ORTHO05D009052 2.9e-73 279.3 244 61.1
Lj3g0001968 Lotus japonicus HOM05D007255 ORTHO05D009052 1.9e-72 276.6 263 58.9
Nn1g08274 Nelumbo nucifera HOM05D007255 ORTHO05D009052 4.2e-72 275.4 311 51.8
unitig_64.g29772 Utricularia gibba HOM05D007255 ORTHO05D009052 4.2e-72 275.4 232 63.4
arahy.Tifrunner.gnm1.ann1.UDT0KZ Arachis hypogaea HOM05D007255 ORTHO05D009052 1.2e-71 273.9 209 69.9
MELO3C012737.2 Cucumis melo HOM05D007255 ORTHO05D009052 1.2e-71 273.9 224 66.5
Lalb_Chr12g0210041 Lupinus albus HOM05D007255 ORTHO05D009052 1.6e-71 273.5 204 67.2
BcaC06g30785 Brassica carinata HOM05D007255 ORTHO05D009052 4.6e-71 271.9 200 71.0
AUR62028710 Chenopodium quinoa HOM05D007255 ORTHO05D009052 1.8e-70 270.0 265 58.5
PSO170G5614 Papaver somniferum HOM05D007255 ORTHO05D009052 1.8e-70 270.0 216 64.4
CsaV3_7G026920 Cucumis sativus L. HOM05D007255 ORTHO05D009052 5.1e-70 268.5 220 64.5
PSO357G0536 Papaver somniferum HOM05D007255 ORTHO05D009052 4.3e-69 265.4 216 63.4
Sed0001908 Sechium edule HOM05D007255 ORTHO05D009052 3.7e-68 262.3 208 66.3
AT5G48530 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 1.1e-67 260.8 202 69.8
GSVIVG01006076001 Vitis vinifera HOM05D007255 ORTHO05D009052 5.3e-67 258.5 159 81.1
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 2.6e-66 256.1 256 57.4
Os02g0478500 Oryza sativa ssp. japonica HOM05D007255 ORTHO05D009052 1.0e-65 254.2 225 60.0
Zm00001eb241080 Zea mays HOM05D007255 ORTHO05D009052 1.0e-65 254.2 188 67.0
Nn1g03664 Nelumbo nucifera HOM05D007255 ORTHO05D009052 5.0e-65 251.9 204 63.7
Peaxi162Scf00335g01514 Petunia axillaris HOM05D007255 ORTHO05D009052 5.0e-65 251.9 245 59.2
Haze_03304 Corylus avellana HOM05D007255 ORTHO05D009052 8.8e-62 241.1 174 71.3
ATR0491G001 Amborella trichopoda HOM05D007255 ORTHO05D009052 4.3e-61 238.8 156 73.1
CSS0043687 Camellia sinensis var. sinensis HOM05D007255 ORTHO05D009052 4.3e-61 238.8 163 74.8
Lj1A100G17 Lonicera japonica HOM05D007255 ORTHO05D009052 2.8e-60 236.1 183 70.5
Aqoxy2G00044 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 8.2e-60 234.6 178 66.9
HanXRQChr01g0025051 Helianthus annuus HOM05D007255 ORTHO05D009052 1.8e-59 233.4 176 71.6
DCAR_018628 Daucus carota HOM05D007255 ORTHO05D009052 2.4e-59 233.0 164 75.0
Actinidia23788 Actinidia chinensis HOM05D007255 ORTHO05D009052 1.8e-51 206.8 197 59.9
HPP92_024260 Vanilla planifolia HOM05D007255 ORTHO05D009052 1.5e-40 170.6 136 62.5
Glyma.16G083400 Glycine max HOM05D007255 ORTHO05D009052 9.4e-40 167.9 107 76.6
AUR62008128 Chenopodium quinoa HOM05D007255 ORTHO05D009052 4.4e-37 159.1 129 62.0
VMungo0331G1225 Vigna mungo HOM05D007255 ORTHO05D009052 7.2e-32 141.7 114 64.9
HPP92_024228 Vanilla planifolia HOM05D007255 ORTHO05D009052 1.3e-25 120.9 120 58.3
VMungo0331G0526 Vigna mungo HOM05D007255 ORTHO05D009052 1.1e-24 117.9 112 63.4
CDE04G1852 Ceratophyllum demersum HOM05D007255 ORTHO05D009052 1.5e-21 107.5 140 47.9
Prupe.8G191300 Prunus persica HOM05D007255 ORTHO05D009052 1.7e-20 104.0 97 54.6
SEGI_09952 Sequoiadendron giganteum HOM05D007255 ORTHO05D009052 7.0e-19 98.6 55 83.6
VMungo0251G0654 Vigna mungo HOM05D007255 ORTHO05D009052 4.7e-15 85.9 60 73.3
GSVIVG01006250001 Vitis vinifera HOM05D007255 ORTHO05D009052 1.3e-12 77.8 80 51.2
Psat0s4060g0280 Pisum sativum HOM05D007255 ORTHO05D009052 1.6e-07 60.8 82 50.0


User provided reference genes

Program Settings