Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 6.0e-280 966.8 485 100.0
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 2.7e-171 605.9 449 69.5
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.4e-158 562.4 468 64.5
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 5.7e-153 545.0 464 62.1
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 5.0e-149 531.9 383 68.9
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 5.7e-145 518.5 454 63.2
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 6.9e-143 511.5 478 58.6
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 2.5e-132 476.5 473 56.0
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 3.6e-131 472.6 303 74.9
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 6.1e-131 471.9 287 77.7
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 3.3e-129 466.1 428 60.0
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 3.3e-129 466.1 287 77.0
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 1.3e-128 464.2 479 55.7
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 3.7e-128 462.6 378 63.8
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 3.7e-128 462.6 370 63.5
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 4.8e-128 462.2 287 76.3
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 8.2e-128 461.5 287 76.0
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 8.2e-128 461.5 287 76.0
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 8.2e-128 461.5 290 73.1
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 8.2e-128 461.5 288 75.7
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 1.1e-127 461.1 291 73.2
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 1.4e-127 460.7 287 75.6
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 1.4e-127 460.7 287 76.3
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.4e-127 460.7 290 74.5
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 1.4e-127 460.7 276 74.3
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.4e-127 459.9 274 77.7
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 4.1e-127 459.1 291 72.9
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 5.3e-127 458.8 287 75.3
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 7.0e-127 458.4 291 72.9
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 7.0e-127 458.4 484 55.2
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 1.6e-126 457.2 306 72.9
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.6e-126 457.2 288 76.4
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 1.6e-126 457.2 339 68.7
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 2.0e-126 456.8 287 74.9
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 2.0e-126 456.8 290 75.9
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.0e-125 454.5 465 54.6
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.3e-125 454.1 363 62.5
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 8.5e-125 451.4 256 79.7
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 1.9e-124 450.3 254 79.9
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 3.2e-124 449.5 253 79.8
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 4.2e-124 449.1 344 65.4
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 5.5e-124 448.7 253 79.8
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 5.5e-124 448.7 401 59.6
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 5.5e-124 448.7 434 55.5
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.2e-123 447.6 415 59.8
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.2e-123 447.6 476 54.8
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 1.6e-123 447.2 256 79.7
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 1.6e-123 447.2 256 79.7
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.7e-123 446.4 411 57.7
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 3.6e-123 446.0 286 73.4
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 6.1e-123 445.3 287 74.2
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.0e-122 444.5 256 79.3
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 1.4e-122 444.1 259 76.4
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 1.8e-122 443.7 269 75.8
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 2.3e-122 443.4 252 79.8
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 6.7e-122 441.8 289 72.7
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 6.7e-122 441.8 256 78.5
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 8.8e-122 441.4 290 72.8
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 2.0e-121 440.3 311 70.1
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 4.4e-121 439.1 469 54.4
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 4.4e-121 439.1 488 52.7
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 5.7e-121 438.7 253 77.5
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 7.5e-121 438.3 339 66.1
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 9.7e-121 438.0 252 78.2
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.7e-120 437.2 287 72.5
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 3.7e-120 436.0 360 61.4
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 3.7e-120 436.0 468 52.1
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 4.8e-120 435.6 256 76.6
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 1.4e-119 434.1 253 77.5
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 2.4e-119 433.3 286 70.6
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 2.4e-119 433.3 252 77.0
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 3.1e-119 433.0 286 71.7
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 5.3e-119 432.2 287 70.7
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 5.3e-119 432.2 504 50.4
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 7.0e-119 431.8 472 49.8
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 7.0e-119 431.8 253 77.1
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 7.0e-119 431.8 298 70.1
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 1.2e-118 431.0 254 76.0
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 2.0e-118 430.3 488 51.8
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.7e-118 429.9 253 77.1
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 4.5e-118 429.1 286 70.6
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 4.5e-118 429.1 316 64.9
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 7.7e-118 428.3 341 64.2
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 1.3e-117 427.6 286 70.6
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.7e-117 427.2 301 69.8
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.7e-117 427.2 318 66.4
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 1.7e-117 427.2 256 75.8
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 6.5e-117 425.2 470 50.4
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 8.5e-117 424.9 309 68.3
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 1.5e-116 424.1 288 70.1
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.5e-116 424.1 466 52.4
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 3.2e-116 422.9 286 70.6
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 3.2e-116 422.9 269 71.4
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 3.2e-116 422.9 260 77.7
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 9.4e-116 421.4 342 64.3
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 1.4e-114 417.5 409 54.8
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 1.8e-114 417.2 253 75.1
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 2.3e-114 416.8 254 74.8
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 5.2e-114 415.6 255 73.3
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 8.8e-114 414.8 232 81.0
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 2.6e-113 413.3 463 51.4
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 1.7e-112 410.6 290 67.9
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 4.1e-111 406.0 232 78.0
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 9.1e-111 404.8 413 52.5
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 2.7e-110 403.3 311 65.6
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.0e-109 401.4 395 55.4
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 6.5e-109 398.7 311 65.0
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 4.7e-107 392.5 281 67.3
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 3.0e-106 389.8 460 51.1
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 1.5e-105 387.5 265 71.3
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 5.7e-105 385.6 319 61.8
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 1.7e-104 384.0 302 63.9
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 1.4e-103 380.9 224 75.9
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 7.0e-103 378.6 324 59.3
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 2.0e-97 360.5 218 73.9
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 6.4e-96 355.5 334 59.6
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 5.4e-95 352.4 319 56.4
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 2.7e-94 350.1 317 55.8
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 3.0e-93 346.7 303 56.8
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.6e-91 339.7 205 78.0
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 4.7e-91 339.3 252 65.1
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 2.2e-88 330.5 322 57.8
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 3.3e-84 316.6 178 79.8
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 5.2e-82 309.3 173 82.1
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 5.2e-82 309.3 173 82.1
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 3.4e-81 306.6 243 61.3
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 4.9e-80 302.8 289 54.7
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 8.3e-80 302.0 173 80.3
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 5.4e-79 299.3 274 59.5
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 1.6e-78 297.7 177 78.0
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 7.8e-78 295.4 172 78.5
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 6.6e-77 292.4 393 45.0
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.2e-73 281.6 286 54.9
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 4.9e-72 276.2 296 53.0
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 4.7e-67 259.6 314 46.2
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.8e-66 257.7 233 56.7
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 1.9e-63 247.7 244 50.4
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 7.3e-60 235.7 311 44.7
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.0e-57 227.6 191 59.2
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 8.4e-56 222.2 184 57.6
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.1e-52 211.8 214 53.7
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.3e-51 208.4 162 67.3
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 3.1e-50 203.8 163 66.3
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 9.0e-50 202.2 159 67.3
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 1.7e-48 198.0 230 47.8
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 1.0e-45 188.7 223 45.3
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 2.3e-45 187.6 242 44.2
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 3.7e-43 180.3 250 42.4
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 1.0e-40 172.2 124 62.9
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 1.3e-40 171.8 123 63.4
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 8.4e-40 169.1 104 73.1
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 3.8e-32 143.7 89 67.4
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 9.7e-20 102.4 73 65.8
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 1.1e-10 72.4 43 67.4
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 1.1e-10 72.4 43 67.4
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 1.6e-06 58.5 141 29.1


User provided reference genes

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