Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 3.4e-115 418.3 209 100.0
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.2e-86 323.6 208 76.0
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 4.1e-84 315.1 208 74.5
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 1.2e-78 297.0 213 71.8
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 7.0e-76 287.7 208 70.2
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 7.0e-76 287.7 208 69.2
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.1e-73 280.4 213 66.7
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 2.1e-72 276.2 218 66.5
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 6.1e-72 274.6 218 66.1
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.4e-71 273.5 218 66.5
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 3.1e-71 272.3 219 66.7
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.5e-70 270.0 218 67.4
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.5e-70 270.0 218 65.6
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 4.4e-70 268.5 218 64.2
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 9.8e-70 267.3 218 64.2
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 9.8e-70 267.3 218 64.2
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.3e-69 266.9 214 66.8
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.2e-69 266.2 218 66.1
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 2.2e-69 266.2 218 64.7
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 3.7e-69 265.4 218 64.2
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 1.1e-68 263.8 207 64.7
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.9e-68 263.1 216 65.3
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 3.2e-68 262.3 213 64.8
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 7.0e-68 261.2 214 63.6
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.2e-67 260.4 218 63.8
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 3.5e-67 258.8 212 64.6
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.3e-66 256.9 211 64.0
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 2.3e-66 256.1 215 61.9
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 2.3e-66 256.1 216 61.6
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 3.0e-66 255.8 214 61.7
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 3.9e-66 255.4 211 63.0
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 6.6e-66 254.6 217 60.8
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 6.6e-66 254.6 219 61.2
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 6.6e-66 254.6 216 63.9
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.1e-65 253.8 217 60.8
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.1e-65 253.8 219 61.6
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.5e-65 253.4 217 60.8
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.9e-65 253.1 215 61.9
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.9e-65 253.1 210 61.9
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 1.9e-65 253.1 219 61.2
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.9e-65 253.1 218 61.0
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 3.3e-65 252.3 217 60.4
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 5.6e-65 251.5 217 60.4
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 2.1e-64 249.6 220 62.3
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 8.0e-64 247.7 220 61.4
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 8.0e-64 247.7 220 61.4
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 8.0e-64 247.7 213 62.9
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 3.1e-63 245.7 219 60.7
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 3.1e-63 245.7 212 60.4
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 6.8e-63 244.6 217 59.4
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 8.9e-63 244.2 215 61.4
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.5e-62 243.4 217 59.9
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.6e-62 242.7 220 59.5
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 4.4e-62 241.9 213 61.5
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 9.8e-62 240.7 217 59.4
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 9.8e-62 240.7 214 61.7
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.3e-61 240.4 221 59.7
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.7e-61 240.0 214 58.9
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 2.9e-61 239.2 221 61.5
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 3.7e-61 238.8 228 60.1
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 1.4e-60 236.9 213 59.2
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.9e-60 236.5 211 63.0
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.4e-60 236.1 224 58.5
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.4e-60 236.1 214 55.6
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 2.4e-60 236.1 214 56.5
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 3.2e-60 235.7 218 56.9
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 4.1e-60 235.3 219 57.5
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 5.4e-60 235.0 214 57.0
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 7.0e-60 234.6 214 57.5
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 9.2e-60 234.2 215 59.5
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 2.1e-59 233.0 190 60.0
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 2.7e-59 232.6 215 56.3
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 2.7e-59 232.6 211 56.9
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 4.6e-59 231.9 211 56.9
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 6.0e-59 231.5 211 56.9
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.3e-58 230.3 209 56.0
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 3.0e-58 229.2 218 58.7
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 3.9e-58 228.8 215 55.3
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 5.1e-58 228.4 227 55.1
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 5.1e-58 228.4 211 54.5
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 6.6e-58 228.0 214 56.5
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 7.3e-57 224.6 216 54.2
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 1.2e-56 223.8 215 53.5
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 1.2e-56 223.8 200 58.5
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.6e-56 223.4 213 58.2
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 2.8e-56 222.6 216 56.9
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 2.8e-56 222.6 215 55.3
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 4.7e-56 221.9 213 57.3
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 6.2e-56 221.5 218 56.9
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.1e-55 220.7 211 56.9
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 1.1e-55 220.7 228 53.9
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.8e-55 219.9 218 56.4
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.3e-55 219.5 218 56.4
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 3.1e-55 219.2 208 54.8
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 4.0e-55 218.8 214 53.3
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 8.9e-55 217.6 208 54.8
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.5e-54 216.9 147 71.4
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.0e-54 216.5 202 56.4
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 2.0e-54 216.5 212 57.1
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 3.4e-54 215.7 208 53.8
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 4.4e-54 215.3 217 54.4
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 5.8e-54 214.9 216 56.0
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 3.7e-53 212.2 211 55.0
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 8.3e-53 211.1 235 52.8
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 8.3e-53 211.1 216 51.4
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.9e-52 209.9 210 54.8
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 4.1e-52 208.8 209 53.6
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 7.1e-52 208.0 222 49.1
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 9.2e-52 207.6 211 55.0
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 9.2e-52 207.6 218 51.8
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 2.7e-51 206.1 211 53.6
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 3.5e-51 205.7 210 52.9
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 3.5e-51 205.7 134 72.4
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 1.3e-50 203.8 211 53.1
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 1.3e-50 203.8 211 53.1
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 1.3e-50 203.8 211 53.1
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 2.3e-50 203.0 211 52.6
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 2.3e-50 203.0 218 52.8
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 6.6e-50 201.4 208 54.3
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 6.6e-50 201.4 208 54.3
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 8.6e-50 201.1 171 57.9
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 2.5e-49 199.5 214 52.3
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 3.3e-49 199.1 214 52.3
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 4.3e-49 198.7 211 51.2
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 4.3e-49 198.7 211 51.7
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 9.5e-49 197.6 242 51.7
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.6e-48 196.8 210 50.5
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 2.1e-48 196.4 212 51.4
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 1.1e-47 194.1 225 49.3
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.4e-47 193.7 188 59.0
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 4.0e-47 192.2 187 53.5
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 4.0e-47 192.2 144 62.5
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 8.9e-47 191.0 225 49.8
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 8.9e-47 191.0 224 48.7
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 8.9e-47 191.0 184 57.6
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 3.4e-46 189.1 185 54.1
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 5.8e-46 188.3 233 46.8
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 7.6e-46 188.0 137 63.5
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.9e-45 186.0 199 48.7
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 4.9e-45 185.3 133 65.4
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 8.4e-45 184.5 157 59.2
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 8.4e-45 184.5 155 56.1
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 1.2e-43 180.6 203 48.8
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 1.6e-43 180.3 172 52.9
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 2.1e-43 179.9 142 59.2
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 6.0e-43 178.3 211 49.8
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 3.0e-42 176.0 215 46.0
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 3.0e-42 176.0 221 46.6
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 6.6e-42 174.9 211 49.3
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 6.6e-42 174.9 221 46.6
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 3.3e-41 172.6 217 48.4
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 5.6e-41 171.8 123 65.0
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 9.6e-41 171.0 221 45.7
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 8.1e-40 167.9 227 44.9
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.1e-39 167.5 170 51.8
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.8e-39 166.8 124 62.1
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.4e-39 166.4 123 61.8
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 4.0e-39 165.6 118 64.4
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.2e-38 164.1 124 62.9
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 2.6e-38 162.9 221 43.4
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.6e-35 153.7 116 56.9
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 3.5e-35 152.5 120 56.7
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 1.0e-34 151.0 126 57.9
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 2.3e-34 149.8 212 42.9
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.0e-34 149.4 210 44.3
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 4.3e-33 145.6 136 55.1
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 4.3e-33 145.6 156 57.1
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 2.8e-32 142.9 210 42.9
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 5.3e-31 138.7 263 36.1
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 1.9e-28 130.2 208 42.3
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 4.2e-28 129.0 74 79.7
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 8.7e-26 121.3 222 39.6
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 8.7e-26 121.3 222 39.6
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.9e-25 120.2 88 63.6
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 3.1e-23 112.8 214 38.3
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 2.5e-20 103.2 80 62.5
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 4.8e-16 89.0 52 73.1
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 8.2e-16 88.2 46 78.3
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 6.1e-11 72.0 113 45.1
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 4.8e-08 62.4 125 39.2
SGA_v2.0_scaffold141G35518 Striga asiatica HOM05D000145 ORTHO05D399266 5.3e-07 58.9 83 44.6


User provided reference genes

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