Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 8.1e-230 800.0 401 100.0
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 6.9e-197 690.6 401 85.3
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 8.2e-190 667.2 401 83.8
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 1.4e-189 666.4 410 82.7
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 5.8e-188 661.0 399 81.5
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.1e-186 656.8 399 80.7
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 3.2e-186 655.2 399 79.7
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 4.2e-186 654.8 399 79.9
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 7.2e-186 654.1 396 81.1
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 3.5e-185 651.7 400 81.5
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 6.7e-184 647.5 399 78.4
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 1.9e-183 646.0 396 80.1
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 3.3e-183 645.2 396 79.0
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 4.3e-183 644.8 399 80.5
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 5.7e-183 644.4 499 68.9
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 5.7e-183 644.4 396 80.1
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 2.2e-182 642.5 399 78.9
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 2.8e-182 642.1 399 79.9
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 3.7e-182 641.7 399 79.9
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 4.8e-182 641.3 396 78.8
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 8.2e-182 640.6 417 76.5
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 1.4e-181 639.8 399 78.2
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 1.4e-181 639.8 399 79.4
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 3.1e-181 638.6 404 79.2
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 3.1e-181 638.6 399 78.7
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 4.1e-181 638.3 400 79.0
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 4.1e-181 638.3 399 77.7
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 4.1e-181 638.3 399 80.2
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 5.3e-181 637.9 400 78.8
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 5.3e-181 637.9 402 80.8
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 2.0e-180 636.0 400 79.8
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 2.0e-180 636.0 399 77.4
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 2.0e-180 636.0 399 78.2
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 1.3e-179 633.3 431 74.2
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 1.3e-179 633.3 399 78.2
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.2e-179 632.5 400 79.2
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 2.2e-179 632.5 399 76.7
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 2.9e-179 632.1 399 76.4
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 5.0e-179 631.3 393 79.6
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 6.5e-179 630.9 399 77.7
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 8.5e-179 630.6 399 76.9
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 1.4e-178 629.8 399 77.2
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.4e-178 629.8 399 76.7
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 3.2e-178 628.6 399 77.4
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 5.5e-178 627.9 397 77.6
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 7.2e-178 627.5 423 74.2
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 7.2e-178 627.5 399 75.2
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 9.4e-178 627.1 398 75.6
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 3.6e-177 625.2 400 78.2
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 3.6e-177 625.2 399 76.4
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 6.1e-177 624.4 399 77.4
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 2.3e-176 622.5 398 77.6
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 6.7e-176 620.9 400 77.0
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 1.5e-175 619.8 399 76.7
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 1.5e-175 619.8 399 75.7
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 4.3e-175 618.2 399 76.7
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 4.3e-175 618.2 400 76.8
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 5.7e-175 617.8 400 76.5
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 9.7e-175 617.1 397 76.3
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.3e-174 616.7 401 76.3
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.2e-174 615.9 394 77.2
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 2.2e-174 615.9 399 75.9
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 2.2e-174 615.9 400 76.5
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 6.3e-174 614.4 395 77.2
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 1.8e-173 612.8 361 82.3
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 2.4e-173 612.5 397 75.8
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 3.1e-173 612.1 397 76.3
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 4.1e-173 611.7 395 76.2
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 6.9e-173 610.9 400 75.2
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 6.9e-173 610.9 397 75.3
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 6.9e-173 610.9 397 75.6
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 6.9e-173 610.9 400 76.0
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 2.0e-172 609.4 396 75.5
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 2.0e-172 609.4 396 75.5
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 5.9e-172 607.8 389 77.1
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 7.7e-172 607.4 397 75.1
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 7.7e-172 607.4 396 75.5
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 3.8e-171 605.1 393 76.1
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 6.5e-171 604.4 397 75.6
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 8.5e-171 604.0 367 80.7
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 1.4e-170 603.2 397 75.3
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 1.4e-170 603.2 397 75.3
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 2.5e-170 602.4 400 74.0
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 5.5e-170 601.3 396 75.0
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 5.5e-170 601.3 398 75.4
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 9.4e-170 600.5 398 75.4
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 9.4e-170 600.5 397 75.3
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 9.4e-170 600.5 403 75.2
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 1.6e-169 599.7 396 75.3
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 2.1e-169 599.4 397 75.3
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 2.1e-169 599.4 400 73.5
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 7.9e-169 597.4 401 72.3
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 1.8e-168 596.3 397 74.8
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 2.3e-168 595.9 373 77.5
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 3.0e-168 595.5 396 74.2
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 3.0e-168 595.5 443 69.1
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 3.9e-168 595.1 444 68.7
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 5.1e-168 594.7 360 79.4
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 6.7e-168 594.3 373 77.2
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 6.7e-168 594.3 396 74.7
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 8.8e-168 594.0 397 74.1
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 1.1e-167 593.6 396 74.7
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 1.7e-166 589.7 392 74.7
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 4.8e-166 588.2 453 69.1
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 3.1e-165 585.5 395 71.1
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 1.2e-164 583.6 410 72.2
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 1.3e-163 580.1 353 79.0
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 1.6e-161 573.2 416 70.0
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.6e-161 573.2 552 57.2
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 1.4e-157 560.1 362 73.5
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 1.7e-155 553.1 398 71.1
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 7.2e-154 547.7 354 77.1
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.9e-146 523.1 328 78.7
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 2.6e-143 512.7 313 78.3
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 3.5e-140 502.3 290 82.8
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 1.0e-136 490.7 318 78.0
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 6.4e-134 481.5 312 76.3
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.4e-128 463.8 343 70.3
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 4.4e-119 432.2 393 56.2
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 1.6e-116 423.7 289 73.7
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 7.8e-116 421.4 364 55.2
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 5.1e-115 418.7 384 56.0
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 1.7e-107 393.7 344 53.5
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 3.6e-97 359.4 349 52.7
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 3.4e-95 352.8 236 77.5
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 1.8e-83 313.9 224 69.2
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 5.1e-83 312.4 284 51.4
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 4.2e-77 292.7 350 44.6
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 8.7e-67 258.5 364 39.0
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 1.0e-62 245.0 229 59.4
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 2.3e-59 233.8 211 61.6
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 7.4e-58 228.8 335 40.6
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 2.4e-56 223.8 268 50.7
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 5.0e-54 216.1 133 79.7
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.0e-43 181.8 99 89.9
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 5.4e-32 142.9 80 85.0
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 9.1e-32 142.1 82 84.1
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 5.5e-29 132.9 132 56.1
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 4.4e-26 123.2 81 72.8
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 2.3e-22 110.9 105 52.4
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 1.0e-19 102.1 65 70.8
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 1.8e-19 101.3 100 57.0
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 4.7e-12 76.6 64 64.1
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 5.4e-08 63.2 51 62.7
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 9.2e-08 62.4 37 81.1
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 5.0e-06 56.6 32 81.2


User provided reference genes

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