Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18323 Avicennia marina HOM05D003989 ORTHO05D004626 1.4e-116 422.9 206 100.0
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 7.6e-83 310.8 205 74.1
Oeu063312.1 Olea europaea HOM05D003989 ORTHO05D004626 8.7e-79 297.4 206 69.9
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 4.3e-78 295.0 204 70.1
Hma1.2p1_0273F.1_g109620 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 2.6e-75 285.8 206 67.0
Thecc.01G257400 Theobroma cacao HOM05D003989 ORTHO05D004626 5.9e-75 284.6 206 68.0
MD10G1183600 Malus domestica HOM05D003989 ORTHO05D004626 7.6e-75 284.3 206 67.0
Sed0015900 Sechium edule HOM05D003989 ORTHO05D004626 1.3e-74 283.5 206 65.5
Atru.chr5.1704 Acer truncatum HOM05D003989 ORTHO05D004626 1.7e-74 283.1 206 67.5
Dinv22401 Davidia involucrata HOM05D003989 ORTHO05D004626 5.0e-74 281.6 206 68.0
FvH4_2g21360 Fragaria vesca HOM05D003989 ORTHO05D004626 6.5e-74 281.2 206 66.5
Prupe.8G222700 Prunus persica HOM05D003989 ORTHO05D004626 6.5e-74 281.2 206 66.0
Migut.D00429 Erythranthe guttata HOM05D003989 ORTHO05D004626 8.5e-74 280.8 205 64.9
RcHm_v2.0_Chr6g0287951 Rosa chinensis HOM05D003989 ORTHO05D004626 1.1e-73 280.4 206 66.0
Sc05g0000580 Simmondsia chinensis HOM05D003989 ORTHO05D004626 1.1e-73 280.4 206 65.5
Actinidia07300 Actinidia chinensis HOM05D003989 ORTHO05D004626 3.2e-73 278.9 206 66.5
Sabra05G0173700 Salix brachista HOM05D003989 ORTHO05D004626 4.2e-73 278.5 206 64.6
Duzib211G0528 Durio zibethinus HOM05D003989 ORTHO05D004626 5.5e-73 278.1 206 68.0
Manes.12G032900 Manihot esculenta HOM05D003989 ORTHO05D004626 5.5e-73 278.1 206 66.5
Hma1.2p1_0576F.1_g182030 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 7.2e-73 277.7 206 65.0
CiPaw.03G265100 Carya illinoinensis HOM05D003989 ORTHO05D004626 1.2e-72 276.9 211 65.4
Potri.005G225100 Populus trichocarpa HOM05D003989 ORTHO05D004626 1.2e-72 276.9 206 64.6
HanXRQChr04g0115141 Helianthus annuus HOM05D003989 ORTHO05D004626 2.7e-72 275.8 206 65.0
EL10As5g23494 Beta vulgaris HOM05D003989 ORTHO05D004626 3.6e-72 275.4 206 64.6
Hund02930 Selenicereus undatus HOM05D003989 ORTHO05D004626 4.6e-72 275.0 206 65.0
Cpa.g.sc50.14 Carica papaya HOM05D003989 ORTHO05D004626 6.1e-72 274.6 206 66.0
Nn1g02783 Nelumbo nucifera HOM05D003989 ORTHO05D004626 7.9e-72 274.2 212 65.6
Rhsim01G0262900 Rhododendron simsii HOM05D003989 ORTHO05D004626 7.9e-72 274.2 206 65.0
Nitab4.5_0000470g0010 Nicotiana tabacum HOM05D003989 ORTHO05D004626 1.3e-71 273.5 206 64.6
MELO3C012749.2 Cucumis melo HOM05D003989 ORTHO05D004626 1.8e-71 273.1 212 63.2
FAN15G1221 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.8e-71 273.1 212 64.2
MD05G1196300 Malus domestica HOM05D003989 ORTHO05D004626 1.8e-71 273.1 206 65.0
FAN27G0191 Fragaria x ananassa HOM05D003989 ORTHO05D004626 3.9e-71 271.9 212 63.7
CsaV3_7G027030 Cucumis sativus L. HOM05D003989 ORTHO05D004626 5.1e-71 271.6 206 63.6
Lj1A67G39 Lonicera japonica HOM05D003989 ORTHO05D004626 1.1e-70 270.4 206 64.6
FAN20G0664 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.5e-70 270.0 212 63.7
FAN24G0489 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.9e-70 269.6 217 62.7
Lj5g0003366 Lotus japonicus HOM05D003989 ORTHO05D004626 1.9e-70 269.6 206 65.0
Gohir.D07G155200 Gossypium hirsutum HOM05D003989 ORTHO05D004626 2.5e-70 269.2 206 63.1
vmacro02667 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 2.5e-70 269.2 206 64.6
MSTRG.17493 Avicennia marina HOM05D003989 ORTHO05D004626 3.3e-70 268.9 204 66.7
Haze_24640 Corylus avellana HOM05D003989 ORTHO05D004626 3.3e-70 268.9 231 59.7
CANSAT01G0960 Cannabis sativa HOM05D003989 ORTHO05D004626 5.7e-70 268.1 206 64.1
Potri.002G037900 Populus trichocarpa HOM05D003989 ORTHO05D004626 1.3e-69 266.9 206 63.1
Hund09614 Selenicereus undatus HOM05D003989 ORTHO05D004626 1.3e-69 266.9 205 63.4
DCAR_012550 Daucus carota HOM05D003989 ORTHO05D004626 1.6e-69 266.5 206 63.6
Migut.N02208 Erythranthe guttata HOM05D003989 ORTHO05D004626 1.6e-69 266.5 206 62.6
Solyc09g025250.4 Solanum lycopersicum HOM05D003989 ORTHO05D004626 1.6e-69 266.5 206 64.1
Sopen09g028270 Solanum pennellii HOM05D003989 ORTHO05D004626 1.6e-69 266.5 206 64.1
TWI75G1341 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 2.2e-69 266.2 206 61.7
CSS0015006 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 3.7e-69 265.4 206 63.1
Gorai.001G254000 Gossypium raimondii HOM05D003989 ORTHO05D004626 6.3e-69 264.6 206 62.1
MBI10_g23171_MAGBIO Magnolia biondii HOM05D003989 ORTHO05D004626 6.3e-69 264.6 207 63.3
Gohir.A07G148900 Gossypium hirsutum HOM05D003989 ORTHO05D004626 1.1e-68 263.8 209 62.7
Gorai.001G177700 Gossypium raimondii HOM05D003989 ORTHO05D004626 1.1e-68 263.8 209 62.2
CSS0015513 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 5.3e-68 261.5 206 63.6
ECA236G3729 Erigeron canadensis HOM05D003989 ORTHO05D004626 5.3e-68 261.5 206 62.6
PGSC0003DMG400010319 Solanum tuberosum HOM05D003989 ORTHO05D004626 6.9e-68 261.2 207 63.3
CAN.G1147.6 Capsicum annuum HOM05D003989 ORTHO05D004626 2.0e-67 259.6 214 61.2
Cfa002434 Carpinus fangiana HOM05D003989 ORTHO05D004626 4.5e-67 258.5 207 62.8
Sabra02G0030600 Salix brachista HOM05D003989 ORTHO05D004626 1.3e-66 256.9 229 56.8
Eucgr.K03258 Eucalyptus grandis HOM05D003989 ORTHO05D004626 1.7e-66 256.5 206 62.1
TAR636G0965 Trochodendron aralioides HOM05D003989 ORTHO05D004626 2.9e-66 255.8 208 61.5
SGA_v2.0_scaffold2G00880 Striga asiatica HOM05D003989 ORTHO05D004626 6.5e-66 254.6 204 62.7
Glyma.12G060500 Glycine max HOM05D003989 ORTHO05D004626 8.5e-66 254.2 206 61.7
PSO210G1270 Papaver somniferum HOM05D003989 ORTHO05D004626 1.1e-65 253.8 206 60.7
PSO832G2594 Papaver somniferum HOM05D003989 ORTHO05D004626 1.1e-65 253.8 206 60.7
ClCG09G008040 Citrullus lanatus HOM05D003989 ORTHO05D004626 2.5e-65 252.7 255 52.5
arahy.Tifrunner.gnm1.ann1.CXB6W4 Arachis hypogaea HOM05D003989 ORTHO05D004626 7.2e-65 251.1 207 61.4
THA.LOC104815848 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 7.2e-65 251.1 206 59.7
GSVIVG01028345001 Vitis vinifera HOM05D003989 ORTHO05D004626 7.2e-65 251.1 245 53.9
COL.COLO4_03876 Corchorus olitorius HOM05D003989 ORTHO05D004626 9.4e-65 250.8 206 59.2
Phvul.007G192500 Phaseolus vulgaris HOM05D003989 ORTHO05D004626 9.4e-65 250.8 206 60.7
Aqoxy5G00222 Aquilegia oxysepala HOM05D003989 ORTHO05D004626 1.2e-64 250.4 207 59.9
BraA03t11012Z Brassica rapa HOM05D003989 ORTHO05D004626 1.2e-64 250.4 205 59.5
BcaC01g05976 Brassica carinata HOM05D003989 ORTHO05D004626 2.1e-64 249.6 205 59.0
C03p20540 Brassica napus HOM05D003989 ORTHO05D004626 2.1e-64 249.6 205 59.0
BolC3t14434H Brassica oleracea HOM05D003989 ORTHO05D004626 2.1e-64 249.6 205 59.0
DCAR_018490 Daucus carota HOM05D003989 ORTHO05D004626 2.1e-64 249.6 204 59.3
CARHR124740 Cardamine hirsuta HOM05D003989 ORTHO05D004626 2.7e-64 249.2 206 58.3
TWI12G0613 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 3.6e-64 248.8 204 58.8
Ca_09678_v3 Cicer arietinum L. HOM05D003989 ORTHO05D004626 4.6e-64 248.4 206 60.2
Lalb_Chr06g0170491 Lupinus albus HOM05D003989 ORTHO05D004626 7.9e-64 247.7 204 62.3
Lalb_Chr21g0313881 Lupinus albus HOM05D003989 ORTHO05D004626 7.9e-64 247.7 204 61.3
BcaB01g04061 Brassica carinata HOM05D003989 ORTHO05D004626 1.0e-63 247.3 205 58.0
Os04g0102600 Oryza sativa ssp. japonica HOM05D003989 ORTHO05D004626 1.0e-63 247.3 207 59.9
Ciclev10022360m.g Citrus clementina HOM05D003989 ORTHO05D004626 2.3e-63 246.1 179 64.2
Psat6g041800 Pisum sativum HOM05D003989 ORTHO05D004626 3.0e-63 245.7 206 58.7
AL4G26330 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 3.9e-63 245.4 206 58.7
Cc01_g18270 Coffea canephora HOM05D003989 ORTHO05D004626 5.1e-63 245.0 207 60.9
AT2G31140 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 6.7e-63 244.6 206 58.3
QL09p039095 Quercus lobata HOM05D003989 ORTHO05D004626 6.7e-63 244.6 304 46.1
THA.LOC104800868 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 6.7e-63 244.6 209 59.3
AUR62024686 Chenopodium quinoa HOM05D003989 ORTHO05D004626 8.8e-63 244.2 183 64.5
BcaB02g06815 Brassica carinata HOM05D003989 ORTHO05D004626 1.1e-62 243.8 206 57.8
Carub.0004s1243 Capsella rubella HOM05D003989 ORTHO05D004626 1.5e-62 243.4 206 57.3
Thhalv10017243m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 1.5e-62 243.4 205 57.1
Sp4g13620 Schrenkiella parvula HOM05D003989 ORTHO05D004626 1.5e-62 243.4 205 57.6
Peaxi162Scf01280g00015 Petunia axillaris HOM05D003989 ORTHO05D004626 2.0e-62 243.0 181 64.6
vmacro14818 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 2.6e-62 242.7 188 63.8
Thhalv10008791m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 3.3e-62 242.3 206 55.8
CDE04G0538 Ceratophyllum demersum HOM05D001473 ORTHO05D003900 5.7e-62 241.5 206 58.3
BraA08t35517Z Brassica rapa HOM05D003989 ORTHO05D004626 7.4e-62 241.1 206 56.3
TPR.G23970 Trifolium pratense HOM05D003989 ORTHO05D004626 7.4e-62 241.1 206 59.2
Carub.0001s0556 Capsella rubella HOM05D003989 ORTHO05D004626 9.7e-62 240.7 207 56.5
Rhsim13G0035500 Rhododendron simsii HOM05D003989 ORTHO05D004626 1.3e-61 240.4 185 64.9
Sp1g05010 Schrenkiella parvula HOM05D003989 ORTHO05D004626 2.2e-61 239.6 206 56.3
Medtr1g069900 Medicago truncatula HOM05D003989 ORTHO05D004626 4.8e-61 238.4 206 57.3
C05p04520 Brassica napus HOM05D003989 ORTHO05D004626 6.3e-61 238.0 206 55.8
ATR0736G179 Amborella trichopoda HOM05D003989 ORTHO05D004626 8.2e-61 237.7 207 59.4
AL1G16180 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 8.2e-61 237.7 206 54.9
BraA10t42752Z Brassica rapa HOM05D003989 ORTHO05D004626 1.4e-60 236.9 206 55.3
Lj2A1151T33 Lonicera japonica HOM05D003989 ORTHO05D004626 2.4e-60 236.1 181 63.5
unitig_60.g25751 Utricularia gibba HOM05D003989 ORTHO05D004626 2.4e-60 236.1 206 56.8
CARHR005730 Cardamine hirsuta HOM05D003989 ORTHO05D004626 3.1e-60 235.7 206 54.4
unitig_22.g5457 Utricularia gibba HOM05D003989 ORTHO05D004626 4.1e-60 235.3 206 56.8
AT1G06200 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 5.3e-60 235.0 205 54.1
TAR633G0447 Trochodendron aralioides HOM05D003989 ORTHO05D004626 9.1e-60 234.2 183 61.7
CDE04G0232 Ceratophyllum demersum HOM05D003989 ORTHO05D004626 1.5e-59 233.4 206 55.8
BcaB03g13432 Brassica carinata HOM05D003989 ORTHO05D004626 2.6e-59 232.6 207 55.6
A08p36100 Brassica napus HOM05D003989 ORTHO05D004626 7.7e-59 231.1 214 53.7
C08p02410 Brassica napus HOM05D003989 ORTHO05D004626 1.7e-58 229.9 214 53.7
Zm00001eb089650 Zea mays HOM05D003989 ORTHO05D004626 2.9e-58 229.2 207 56.5
CiPaw.04G187100 Carya illinoinensis HOM05D003989 ORTHO05D004626 3.8e-58 228.8 203 55.2
BolC5t29223H Brassica oleracea HOM05D003989 ORTHO05D004626 5.0e-58 228.4 219 52.1
Glyma.13G123800 Glycine max HOM05D003989 ORTHO05D004626 1.1e-57 227.3 206 57.3
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 1.4e-57 226.9 178 61.8
TAR362G1008 Trochodendron aralioides HOM05D003989 ORTHO05D004626 1.9e-57 226.5 181 60.8
HPP92_008957 Vanilla planifolia HOM05D003989 ORTHO05D004626 9.4e-57 224.2 206 52.4
Gohir.D07G219600 Gossypium hirsutum HOM05D003989 ORTHO05D004626 3.6e-56 222.2 206 55.8
Gohir.A07G213400 Gossypium hirsutum HOM05D003989 ORTHO05D004626 1.0e-55 220.7 206 55.3
SalBow6G3340 Salvia bowleyana HOM05D003989 ORTHO05D004626 1.1e-54 217.2 200 54.0
ATR0736G119 Amborella trichopoda HOM05D003989 ORTHO05D004626 4.4e-54 215.3 197 56.9
AUR62011843 Chenopodium quinoa HOM05D003989 ORTHO05D004626 5.7e-54 214.9 209 53.1
Medtr1g069870 Medicago truncatula HOM05D003989 ORTHO05D004626 5.7e-54 214.9 206 53.9
BcaC05g24296 Brassica carinata HOM05D003989 ORTHO05D004626 7.4e-54 214.5 179 57.0
Aa31LG5G5780 Aethionema arabicum HOM05D003989 ORTHO05D004626 1.3e-53 213.8 177 57.6
Zm00001eb418960 Zea mays HOM05D003989 ORTHO05D004626 4.1e-52 208.8 232 50.9
Lsat_1_v5_gn_8_92701 Lactuca sativa HOM05D003989 ORTHO05D004626 3.8e-50 202.2 147 68.0
SMO238G0041 Selaginella moellendorffii HOM05D003989 ORTHO05D004626 6.5e-50 201.4 195 48.7
COL.COLO4_04036 Corchorus olitorius HOM05D003989 ORTHO05D004626 4.7e-48 195.3 181 54.1
Actinidia30162 Actinidia chinensis HOM05D003989 ORTHO05D004626 5.7e-46 188.3 142 62.0
Nitab4.5_0005001g0020 Nicotiana tabacum HOM05D003989 ORTHO05D004626 4.1e-44 182.2 137 62.8
EL10Ac3g04998 Beta vulgaris HOM05D003989 ORTHO05D004626 5.9e-43 178.3 205 44.9
Pp3c3_23160 Physcomitrium patens HOM05D003989 ORTHO05D004626 3.8e-42 175.6 194 46.4
PGR044G1132 Punica granatum HOM05D003989 ORTHO05D004626 5.0e-42 175.3 142 60.6
AUR62015565 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.1e-41 174.1 200 44.0
Pp3c12_14220 Physcomitrium patens HOM05D003989 ORTHO05D004626 9.4e-41 171.0 201 45.3
Mapoly0108s0055 Marchantia polymorpha HOM05D003989 ORTHO05D004626 6.1e-40 168.3 198 44.4
CBR_g23031 Chara braunii HOM05D003989 ORTHO05D004626 4.0e-39 165.6 198 41.4
Oeu025856.1 Olea europaea HOM05D003989 ORTHO05D004626 6.8e-39 164.9 126 65.9
Ah.13g072470 Amaranthus hybridus HOM05D003989 ORTHO05D004626 2.6e-38 162.9 173 48.0
SEGI_09904 Sequoiadendron giganteum HOM05D003989 ORTHO05D004626 7.5e-38 161.4 136 55.9
AUR62002143 Chenopodium quinoa HOM05D003989 ORTHO05D004626 2.2e-37 159.8 184 45.1
AUR62015563 Chenopodium quinoa HOM05D003989 ORTHO05D004626 3.7e-37 159.1 182 45.6
EL10Ac3g05001 Beta vulgaris HOM05D003989 ORTHO05D004626 2.4e-36 156.4 192 42.2
Hund03044 Selenicereus undatus HOM05D003989 ORTHO05D004626 7.0e-36 154.8 194 43.8
Actinidia09544 Actinidia chinensis HOM05D003989 ORTHO05D004626 1.0e-34 151.0 121 63.6
Hund03045 Selenicereus undatus HOM05D003989 ORTHO05D004626 3.8e-34 149.1 197 40.1
Carub.0007s3141 Capsella rubella HOM05D003989 ORTHO05D004626 1.4e-31 140.6 119 61.3
Medtr1g069890 Medicago truncatula HOM05D003989 ORTHO05D004626 2.8e-29 132.9 119 59.7
AagrBONN_evm.TU.Sc2ySwM_228.3815 Anthoceros agrestis HOM05D003989 ORTHO05D004626 2.7e-27 126.3 142 44.4
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.2e-19 100.9 110 43.6
Cre16.g694703 Chlamydomonas reinhardtii HOM05D003989 ORTHO05D004626 3.0e-18 96.3 146 38.4
MCO11G084 Micromonas commoda HOM05D003989 ORTHO05D004626 5.0e-18 95.5 123 42.3
A04p23940 Brassica napus HOM05D003989 ORTHO05D004626 1.9e-17 93.6 94 55.3
BraA04t17918Z Brassica rapa HOM05D003989 ORTHO05D004626 1.9e-17 93.6 94 55.3
BcaB06g28424 Brassica carinata HOM05D003989 ORTHO05D004626 3.3e-17 92.8 146 39.0
Medtr1g069860 Medicago truncatula HOM05D003989 ORTHO05D004626 9.8e-14 81.3 65 64.6
C04p60570 Brassica napus HOM05D003989 ORTHO05D004626 3.7e-13 79.3 66 60.6
AUR62015564 Chenopodium quinoa HOM05D003989 ORTHO05D004626 3.7e-13 79.3 172 30.8
BcaB06g28507 Brassica carinata HOM05D003989 ORTHO05D004626 1.1e-12 77.8 92 47.8
BcaC02g11217 Brassica carinata HOM05D003989 ORTHO05D004626 6.8e-07 58.5 43 53.5
BcaC02g11218 Brassica carinata HOM05D003989 ORTHO05D004626 6.8e-07 58.5 43 53.5
BolC4t23443H Brassica oleracea HOM05D003989 ORTHO05D004626 6.8e-07 58.5 43 53.5
C04p19080 Brassica napus HOM05D003989 ORTHO05D004626 1.2e-06 57.8 41 56.1
Peaxi162Scf00016g00150 Petunia axillaris HOM05D001774 ORTHO05D001663 9.9e-06 54.7 79 38.0


User provided reference genes

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