Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 3.6e-110 401.7 225 100.0
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 4.6e-33 145.6 169 56.8
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 1.0e-32 144.4 172 48.8
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 3.7e-30 136.0 170 58.2
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.8e-29 133.7 152 53.9
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 3.4e-28 129.4 162 46.9
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 1.0e-27 127.9 155 56.8
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.8e-24 117.1 158 46.2
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 2.8e-22 109.8 169 46.2
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 1.1e-21 107.8 166 50.0
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 1.4e-21 107.5 128 51.6
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 4.1e-21 105.9 125 52.0
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 4.1e-21 105.9 156 48.7
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 6.9e-21 105.1 158 41.8
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.2e-20 104.4 60 63.3
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 2.6e-20 103.2 151 49.0
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 4.5e-20 102.4 157 40.8
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 5.9e-20 102.1 156 40.4
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 1.0e-19 101.3 160 50.0
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 1.7e-19 100.5 150 49.3
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 2.9e-19 99.8 164 37.8
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 3.8e-19 99.4 188 36.7
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 3.8e-19 99.4 163 47.2
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 6.5e-19 98.6 155 50.3
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 1.9e-18 97.1 154 43.5
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 5.5e-18 95.5 151 47.0
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 5.5e-18 95.5 157 39.5
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 7.2e-18 95.1 79 54.4
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 7.2e-18 95.1 151 39.1
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 7.2e-18 95.1 159 35.2
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 9.4e-18 94.7 156 42.3
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.2e-17 94.4 172 35.5
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 3.6e-17 92.8 177 45.8
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 4.7e-17 92.4 158 39.9
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 7.9e-17 91.7 156 41.0
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 7.9e-17 91.7 184 44.0
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 7.9e-17 91.7 137 51.8
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 7.9e-17 91.7 149 38.3
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 7.9e-17 91.7 163 44.2
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 1.8e-16 90.5 53 67.9
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.3e-16 90.1 152 44.7
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 2.3e-16 90.1 137 54.7
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 2.3e-16 90.1 144 46.5
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 3.0e-16 89.7 142 49.3
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 3.0e-16 89.7 150 38.0
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 3.9e-16 89.4 176 33.0
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 3.9e-16 89.4 61 57.4
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 5.1e-16 89.0 138 52.9
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 6.7e-16 88.6 57 61.4
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 6.7e-16 88.6 150 37.3
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 6.7e-16 88.6 152 42.1
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 6.7e-16 88.6 161 46.6
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 8.8e-16 88.2 144 46.5
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 8.8e-16 88.2 59 55.9
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 8.8e-16 88.2 149 43.6
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 1.1e-15 87.8 120 42.5
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 2.6e-15 86.7 150 36.0
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 2.6e-15 86.7 147 46.9
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 3.3e-15 86.3 158 39.9
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 4.4e-15 85.9 55 50.9
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 5.7e-15 85.5 160 35.0
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.7e-15 85.5 152 43.4
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 7.4e-15 85.1 59 50.8
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 9.7e-15 84.7 140 40.0
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.3e-14 84.3 164 40.9
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 1.3e-14 84.3 58 51.7
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 1.3e-14 84.3 58 51.7
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 1.3e-14 84.3 58 51.7
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 1.3e-14 84.3 58 51.7
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 1.3e-14 84.3 57 52.6
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 1.7e-14 84.0 57 52.6
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 1.7e-14 84.0 57 52.6
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 1.7e-14 84.0 163 42.9
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 2.2e-14 83.6 57 52.6
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 2.2e-14 83.6 162 48.8
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 3.7e-14 82.8 57 50.9
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 3.7e-14 82.8 132 40.2
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 4.8e-14 82.4 146 44.5
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 4.8e-14 82.4 148 39.2
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 4.8e-14 82.4 148 39.2
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 6.3e-14 82.0 57 50.9
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 6.3e-14 82.0 57 50.9
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 6.3e-14 82.0 154 41.6
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 6.3e-14 82.0 149 38.9
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 8.2e-14 81.6 76 43.4
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 8.2e-14 81.6 150 42.0
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 8.2e-14 81.6 122 35.2
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 1.1e-13 81.3 123 51.2
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 1.1e-13 81.3 57 50.9
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 1.1e-13 81.3 57 50.9
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.4e-13 80.9 163 39.9
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 1.8e-13 80.5 61 50.8
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 2.4e-13 80.1 61 50.8
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.4e-13 80.1 148 45.9
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 2.4e-13 80.1 172 40.1
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 2.4e-13 80.1 159 47.8
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 3.1e-13 79.7 154 33.8
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 4.1e-13 79.3 166 35.5
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.1e-13 79.3 148 45.3
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.1e-13 79.3 148 45.3
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.1e-13 79.3 148 45.3
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 4.1e-13 79.3 154 31.2
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 7.0e-13 78.6 155 34.8
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 9.1e-13 78.2 161 38.5
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 1.2e-12 77.8 166 40.4
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 1.2e-12 77.8 56 55.4
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.0e-12 77.0 152 48.0
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 2.0e-12 77.0 169 46.7
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 2.6e-12 76.6 134 50.0
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 2.6e-12 76.6 224 29.5
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 3.5e-12 76.3 129 48.8
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 5.9e-12 75.5 83 39.8
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 5.9e-12 75.5 117 49.6
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 7.7e-12 75.1 131 42.7
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 7.7e-12 75.1 97 38.1
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.3e-11 74.3 149 42.3
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 1.3e-11 74.3 150 43.3
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 1.3e-11 74.3 134 34.3
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.7e-11 73.9 170 40.6
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.2e-11 73.6 57 50.9
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 3.8e-11 72.8 64 48.4
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 3.8e-11 72.8 64 48.4
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 5.0e-11 72.4 57 49.1
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 6.5e-11 72.0 57 49.1
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.1e-10 71.2 55 47.3
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.1e-10 71.2 131 34.4
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 1.1e-10 71.2 136 30.1
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 1.1e-10 71.2 136 30.1
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.1e-10 71.2 165 38.2
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.1e-10 71.2 122 36.1
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 1.1e-10 71.2 53 54.7
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 1.1e-10 71.2 50 54.0
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.5e-10 70.9 50 52.0
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 1.5e-10 70.9 57 52.6
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 1.9e-10 70.5 159 32.7
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.5e-10 70.1 55 45.5
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 2.5e-10 70.1 57 49.1
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 3.2e-10 69.7 198 29.8
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 3.2e-10 69.7 52 48.1
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 3.2e-10 69.7 127 39.4
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 4.2e-10 69.3 57 42.1
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 1.6e-09 67.4 127 32.3
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 2.7e-09 66.6 64 45.3
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 3.6e-09 66.2 124 42.7
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.0e-09 65.1 138 38.4
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 8.0e-09 65.1 68 45.6
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.4e-08 64.3 165 39.4
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 3.0e-08 63.2 118 43.2
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 4.0e-08 62.8 42 57.1
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.0e-08 62.8 48 47.9
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.1e-07 61.2 162 29.0
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 7.5e-07 58.5 150 29.3
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 6.3e-06 55.5 118 27.1


User provided reference genes

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