Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 6.7e-81 303.9 147 100.0
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 5.9e-37 157.9 153 59.5
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 7.7e-37 157.5 150 59.3
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 1.0e-36 157.1 152 59.2
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 1.3e-36 156.8 150 57.3
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 2.2e-36 156.0 153 58.2
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 3.8e-36 155.2 152 58.6
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 5.0e-36 154.8 153 57.5
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 5.0e-36 154.8 151 57.0
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 8.5e-36 154.1 150 58.7
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 1.9e-35 152.9 151 56.3
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 3.2e-35 152.1 151 55.6
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 4.2e-35 151.8 152 55.3
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 7.2e-35 151.0 153 56.2
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 7.2e-35 151.0 150 56.7
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 2.1e-34 149.4 152 55.9
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 2.1e-34 149.4 150 56.0
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.7e-34 149.1 152 55.9
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 2.7e-34 149.1 151 55.6
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 6.1e-34 147.9 151 56.3
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 8.0e-34 147.5 154 55.2
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 8.0e-34 147.5 154 55.2
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 8.0e-34 147.5 154 55.2
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 1.4e-33 146.7 153 56.2
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 1.8e-33 146.4 151 55.6
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 2.3e-33 146.0 153 54.9
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.3e-33 146.0 152 55.3
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 5.2e-33 144.8 154 54.5
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 6.7e-33 144.4 154 54.5
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 8.8e-33 144.1 150 53.3
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 8.8e-33 144.1 151 55.0
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 2.0e-32 142.9 148 54.7
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 3.3e-32 142.1 150 53.3
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 3.3e-32 142.1 154 55.2
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 7.5e-32 141.0 152 54.6
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 1.7e-31 139.8 151 53.6
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 2.2e-31 139.4 152 52.0
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 2.8e-31 139.0 151 56.3
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 3.7e-31 138.7 152 53.3
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 3.7e-31 138.7 155 54.8
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 4.8e-31 138.3 152 52.6
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 2.4e-30 136.0 152 53.9
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 5.3e-30 134.8 152 53.3
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 9.1e-30 134.0 151 51.7
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 2.0e-29 132.9 162 52.5
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 3.5e-29 132.1 152 53.3
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 4.5e-29 131.7 124 61.3
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 1.7e-28 129.8 164 47.6
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 2.2e-28 129.4 153 50.3
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 2.2e-28 129.4 153 50.3
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 5.0e-28 128.3 123 58.5
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 6.5e-28 127.9 152 50.7
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 1.5e-27 126.7 152 48.7
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.9e-27 126.3 150 50.7
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.9e-27 126.3 150 50.7
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 1.9e-27 126.3 162 49.4
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 3.2e-27 125.6 154 51.3
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 3.2e-27 125.6 151 49.7
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 4.2e-27 125.2 152 51.3
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 5.5e-27 124.8 122 55.7
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 1.6e-26 123.2 125 56.0
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 2.7e-26 122.5 119 60.5
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 1.4e-25 120.2 152 49.3
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 3.0e-25 119.0 150 50.0
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 3.0e-25 119.0 122 54.9
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 3.0e-25 119.0 162 48.1
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 4.0e-25 118.6 117 56.4
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 6.8e-25 117.9 156 51.3
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 8.8e-25 117.5 152 48.7
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.0e-24 116.3 146 47.9
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 3.4e-24 115.5 111 57.7
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 1.7e-23 113.2 153 47.7
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 2.2e-23 112.8 150 47.3
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 2.8e-23 112.5 118 55.9
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 3.7e-23 112.1 159 49.7
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 1.4e-22 110.2 151 47.7
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 1.8e-22 109.8 151 45.0
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 1.8e-22 109.8 150 46.0
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 1.8e-22 109.8 118 55.1
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 3.1e-22 109.0 122 52.5
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 4.1e-22 108.6 122 52.5
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.6e-21 106.7 123 52.0
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 3.5e-21 105.5 162 45.1
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 1.0e-20 104.0 146 49.3
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 2.3e-20 102.8 122 51.6
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 1.1e-19 100.5 84 61.9
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.5e-19 100.1 122 50.8
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.5e-19 99.4 99 56.6
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 5.5e-19 98.2 152 43.4
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 2.8e-18 95.9 92 63.0
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 8.0e-18 94.4 119 48.7
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 1.8e-17 93.2 123 48.0
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 3.0e-17 92.4 91 58.2
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 4.0e-17 92.0 110 50.0
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 4.0e-17 92.0 128 50.0
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 8.9e-17 90.9 110 50.0
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 2.6e-16 89.4 153 41.8
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 3.4e-16 89.0 129 48.8
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 4.4e-16 88.6 157 41.4
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 9.8e-16 87.4 86 61.6
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 1.3e-15 87.0 127 47.2
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 1.3e-15 87.0 127 47.2
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 2.2e-15 86.3 131 48.1
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 2.8e-15 85.9 119 46.2
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 6.3e-15 84.7 135 41.5
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 6.3e-15 84.7 117 46.2
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 5.4e-14 81.6 116 44.8
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 7.0e-14 81.3 138 37.7
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 7.0e-14 81.3 138 37.7
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 7.0e-14 81.3 138 37.7
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 6.6e-12 74.7 104 44.2
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 6.6e-12 74.7 116 44.0
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 5.6e-11 71.6 123 42.3
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 1.2e-10 70.5 135 42.2
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 4.7e-10 68.6 77 55.8
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 5.2e-09 65.1 92 46.7
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 8.9e-09 64.3 84 48.8
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 2.6e-08 62.8 148 38.5
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 2.6e-08 62.8 108 42.6
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 3.4e-08 62.4 39 71.8
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 6.4e-07 58.2 108 40.7
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 1.4e-06 57.0 114 37.7
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 7.0e-06 54.7 108 38.0


User provided reference genes

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