Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 3.1e-119 431.8 215 100.0
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 5.2e-74 281.6 188 75.0
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 7.5e-73 277.7 193 73.1
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 6.5e-69 264.6 190 68.4
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 1.5e-68 263.5 176 72.2
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 3.2e-68 262.3 194 66.0
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 9.4e-68 260.8 176 71.6
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 2.1e-67 259.6 175 72.0
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 3.6e-67 258.8 191 69.1
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 8.0e-67 257.7 187 71.7
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 1.0e-66 257.3 201 66.7
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 1.8e-66 256.5 191 67.0
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 2.6e-65 252.7 192 65.6
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 7.5e-65 251.1 191 66.0
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 6.3e-64 248.1 182 68.1
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 4.5e-62 241.9 185 67.0
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 1.3e-61 240.4 200 61.0
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.3e-61 240.4 215 60.0
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.7e-61 240.0 184 66.8
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 5.0e-61 238.4 184 63.6
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 5.0e-61 238.4 177 66.1
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 6.6e-61 238.0 181 65.2
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 1.1e-60 237.3 185 64.9
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 1.5e-60 236.9 185 64.9
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 1.5e-60 236.9 173 69.9
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 2.5e-60 236.1 185 64.3
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 2.5e-60 236.1 185 64.3
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 3.3e-60 235.7 199 61.3
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 4.3e-60 235.3 200 60.0
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 9.5e-60 234.2 178 67.4
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 9.5e-60 234.2 183 63.9
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 3.6e-59 232.3 191 62.8
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 4.7e-59 231.9 200 60.5
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 4.7e-59 231.9 170 67.6
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 8.0e-59 231.1 180 64.4
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 1.0e-58 230.7 200 60.0
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 3.0e-58 229.2 170 67.1
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 5.2e-58 228.4 197 60.9
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 1.2e-57 227.3 172 64.0
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 1.2e-57 227.3 248 51.6
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 2.6e-57 226.1 196 59.7
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 3.4e-57 225.7 173 66.5
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 1.3e-56 223.8 194 60.3
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.7e-56 223.4 193 58.5
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 2.2e-56 223.0 193 58.5
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 2.9e-56 222.6 193 58.5
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 3.7e-56 222.2 180 61.7
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 4.9e-56 221.9 196 59.7
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 4.9e-56 221.9 193 58.0
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 8.3e-56 221.1 166 63.9
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 1.1e-55 220.7 201 55.7
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 1.1e-55 220.7 179 63.1
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 4.1e-55 218.8 184 59.2
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 9.2e-55 217.6 177 63.8
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 1.2e-54 217.2 211 55.0
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 1.2e-54 217.2 170 61.2
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 1.2e-54 217.2 201 55.2
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 2.7e-54 216.1 188 58.5
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 5.9e-54 214.9 168 62.5
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 7.8e-54 214.5 176 62.5
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 7.8e-54 214.5 190 61.6
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 1.0e-53 214.2 199 56.8
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 1.0e-53 214.2 174 60.3
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 3.0e-53 212.6 166 60.8
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 3.3e-52 209.1 192 55.2
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 4.3e-52 208.8 186 58.1
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 5.6e-52 208.4 182 57.7
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 9.5e-52 207.6 171 58.5
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 2.8e-51 206.1 201 54.7
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 1.0e-50 204.1 190 54.7
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 1.4e-50 203.8 179 53.6
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 6.8e-50 201.4 187 55.6
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 1.3e-48 197.2 188 54.3
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 2.2e-48 196.4 186 54.3
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 3.7e-48 195.7 200 52.5
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 6.4e-48 194.9 202 52.5
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 1.9e-47 193.4 187 54.0
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 2.4e-47 193.0 185 54.1
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 7.0e-47 191.4 189 55.6
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 1.2e-46 190.7 185 53.0
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 2.0e-46 189.9 192 53.6
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 6.0e-46 188.3 173 55.5
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 7.8e-46 188.0 175 58.3
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 1.3e-45 187.2 175 57.7
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 1.3e-45 187.2 175 57.7
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 3.0e-45 186.0 202 50.5
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 3.9e-45 185.7 170 56.5
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 3.9e-45 185.7 192 52.6
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 3.3e-44 182.6 176 57.4
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 7.3e-44 181.4 176 56.8
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 1.6e-43 180.3 172 56.4
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 2.1e-43 179.9 172 54.7
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 6.2e-43 178.3 173 54.9
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 8.1e-43 177.9 173 54.3
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 8.1e-43 177.9 173 54.3
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 3.1e-42 176.0 161 56.5
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 8.9e-42 174.5 161 56.5
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 8.9e-42 174.5 161 56.5
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 1.5e-41 173.7 159 55.3
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 2.6e-41 172.9 172 52.9
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 7.5e-41 171.4 151 57.0
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 7.5e-41 171.4 164 53.0
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 9.8e-41 171.0 116 72.4
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 1.3e-40 170.6 175 53.7
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 4.6e-38 162.2 162 54.3
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 8.1e-35 151.4 105 72.4
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 6.8e-34 148.3 173 48.6
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 6.4e-32 141.7 178 42.1
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 9.6e-28 127.9 109 59.6
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 1.6e-27 127.1 124 54.8
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 1.1e-20 104.4 185 38.4
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 7.3e-20 101.7 203 33.5
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 1.5e-17 94.0 180 33.9
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 5.8e-17 92.0 96 52.1
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 1.2e-14 84.3 116 38.8
Ca_19566_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 9.3e-07 58.2 44 56.8


User provided reference genes

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