Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 0.0e+00 1142.1 582 100.0
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 2.2e-252 875.5 581 76.8
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 2.3e-246 855.5 565 77.5
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 1.0e-225 786.9 538 71.6
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 1.5e-224 783.1 531 71.6
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 2.1e-223 779.2 552 70.3
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 3.6e-223 778.5 515 71.5
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 6.2e-223 777.7 544 69.5
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 1.4e-222 776.5 558 68.8
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 4.0e-222 775.0 545 70.3
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 4.0e-222 775.0 552 70.1
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 1.2e-221 773.5 563 67.3
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 2.0e-221 772.7 561 68.4
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 1.9e-219 766.1 560 67.7
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 2.3e-217 759.2 559 67.6
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 3.0e-217 758.8 543 69.1
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 1.1e-216 756.9 542 69.2
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 4.3e-216 755.0 548 67.3
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 5.6e-216 754.6 554 69.5
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 7.4e-216 754.2 538 67.8
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 9.6e-216 753.8 554 65.3
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 1.3e-215 753.4 554 70.0
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 3.7e-215 751.9 538 67.7
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 4.8e-215 751.5 555 66.3
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 4.8e-215 751.5 508 72.0
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 4.8e-215 751.5 552 67.9
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 6.2e-215 751.1 536 68.1
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 6.2e-215 751.1 553 67.5
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 8.1e-215 750.7 523 69.8
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 3.1e-214 748.8 540 68.0
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 6.9e-214 747.7 547 68.7
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 9.0e-214 747.3 528 69.9
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 5.8e-213 744.6 557 66.4
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 8.4e-212 740.7 565 65.1
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 1.4e-211 740.0 543 65.9
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 1.9e-211 739.6 552 66.8
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 1.6e-210 736.5 523 69.4
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 3.5e-210 735.3 556 63.7
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 4.6e-210 734.9 543 67.0
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 7.9e-210 734.2 551 66.4
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.0e-209 733.8 564 66.0
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 1.8e-209 733.0 512 71.9
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 3.9e-209 731.9 545 67.9
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 3.9e-209 731.9 537 65.7
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 6.7e-209 731.1 562 64.9
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 6.7e-209 731.1 564 65.4
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 8.7e-209 730.7 547 66.2
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 1.9e-208 729.6 520 67.9
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 2.5e-208 729.2 569 65.9
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 4.3e-208 728.4 534 66.7
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 5.7e-208 728.0 575 65.9
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 3.7e-207 725.3 534 67.8
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 2.4e-206 722.6 529 66.5
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 9.0e-206 720.7 580 62.4
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 7.6e-205 717.6 618 60.7
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 7.6e-205 717.6 618 60.7
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 5.0e-204 714.9 564 63.7
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 6.5e-204 714.5 487 72.9
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 1.9e-203 713.0 547 64.7
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 3.0e-201 705.7 545 65.0
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 3.9e-201 705.3 544 65.8
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 1.5e-200 703.4 550 64.4
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 2.2e-199 699.5 647 55.8
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 8.5e-196 687.6 502 65.5
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 2.5e-195 686.0 525 62.9
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 2.1e-194 682.9 493 68.4
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.4e-193 680.2 576 62.3
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 1.4e-193 680.2 496 69.4
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 3.9e-193 678.7 561 62.7
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 2.6e-192 676.0 484 65.7
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 4.4e-192 675.2 426 72.3
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 9.7e-192 674.1 501 63.3
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 4.8e-191 671.8 538 61.3
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 2.0e-189 666.4 504 62.9
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 1.7e-188 663.3 544 60.5
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 1.6e-186 656.8 443 70.4
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 2.7e-186 656.0 561 59.4
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 3.6e-186 655.6 431 71.7
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 3.6e-186 655.6 488 62.9
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 6.1e-186 654.8 445 68.1
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 6.1e-186 654.8 463 67.2
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 1.0e-185 654.1 443 70.4
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 1.8e-185 653.3 456 68.6
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 1.8e-185 653.3 456 68.6
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 1.5e-184 650.2 431 71.2
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 3.3e-184 649.0 510 63.3
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 1.8e-182 643.3 494 65.4
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 1.8e-182 643.3 558 59.7
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 1.6e-181 640.2 493 64.7
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 2.9e-180 636.0 448 63.4
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 1.5e-179 633.6 497 65.0
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 1.5e-176 623.6 561 56.1
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 3.6e-170 602.4 561 56.5
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 2.2e-164 583.2 547 59.4
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 1.5e-163 580.5 445 62.0
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 4.4e-160 568.9 491 55.8
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 7.5e-160 568.2 489 54.4
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 4.1e-158 562.4 465 55.7
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 4.5e-157 558.9 566 54.4
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.7e-156 557.0 362 72.4
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 3.1e-145 519.6 428 55.8
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 3.9e-132 476.1 492 51.4
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 3.5e-101 373.2 258 71.7
Hma1.2p1_0227F.1_g096470 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 3.7e-66 256.9 186 65.1
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 7.2e-54 216.1 448 33.5
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 1.8e-52 211.5 281 42.3
SEGI_07058 Sequoiadendron giganteum HOM05D006922 ORTHO05D008564 1.1e-49 202.2 156 55.1
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 2.8e-45 187.6 124 73.4
FAN21G0821 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.2e-40 172.2 105 69.5
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 1.7e-39 168.3 266 41.0
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 3.0e-36 157.5 138 59.4
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 1.2e-27 129.0 161 47.2
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 1.7e-26 125.2 85 63.5
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 1.4e-25 122.1 85 62.4
Actinidia25165 Actinidia chinensis HOM05D006922 ORTHO05D008564 2.1e-24 118.2 75 69.3
Actinidia16090 Actinidia chinensis HOM05D006922 ORTHO05D008564 2.7e-24 117.9 94 57.4
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 2.5e-22 111.3 61 77.0
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 1.9e-17 95.1 338 24.6
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 2.1e-16 91.7 332 24.4
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 7.8e-16 89.7 336 25.0
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 2.3e-15 88.2 332 25.3
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 3.9e-15 87.4 326 25.2
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 6.6e-15 86.7 339 25.7
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 8.6e-15 86.3 324 25.0
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 1.5e-14 85.5 331 24.5
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 4.3e-14 84.0 324 24.7
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 4.3e-14 84.0 347 22.8
Actinidia14201 Actinidia chinensis HOM05D000103 ORTHO05D000049 5.6e-14 83.6 73 54.8
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 5.6e-14 83.6 324 25.0
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 5.6e-14 83.6 273 28.6
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 7.3e-14 83.2 340 22.9
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 7.3e-14 83.2 331 22.7
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 9.5e-14 82.8 339 26.0
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 1.2e-13 82.4 263 25.5
CDE02G4620 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 1.2e-13 82.4 194 33.5
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 1.1e-12 79.3 249 28.1
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 1.8e-12 78.6 332 24.4
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 2.4e-12 78.2 255 26.3
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 3.1e-12 77.8 332 22.9
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 5.2e-12 77.0 333 24.0
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 5.2e-12 77.0 335 23.9
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 8.9e-12 76.3 358 23.2
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 1.2e-11 75.9 331 22.4
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.5e-11 75.5 338 22.5
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 2.6e-11 74.7 262 26.0
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 3.4e-11 74.3 253 24.5
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 3.4e-11 74.3 335 25.7
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 4.4e-11 73.9 268 23.1
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 7.6e-11 73.2 343 24.5
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 7.6e-11 73.2 334 24.3
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 9.9e-11 72.8 339 22.7
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 2.2e-10 71.6 277 24.5
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 2.2e-10 71.6 335 25.4
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 2.9e-10 71.2 358 22.6
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.9e-10 71.2 353 22.7
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 2.9e-10 71.2 327 23.9
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 3.8e-10 70.9 251 24.3
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 6.4e-10 70.1 253 24.5
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.1e-09 69.3 249 25.3
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 1.1e-09 69.3 328 23.5
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 1.4e-09 68.9 239 25.5
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.4e-09 68.9 239 25.5
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.4e-09 68.9 239 25.5
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.9e-09 68.6 249 25.3
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 3.2e-09 67.8 347 23.6
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 3.2e-09 67.8 322 22.7
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 5.4e-09 67.0 327 22.6
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 7.1e-09 66.6 337 24.3
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 1.2e-08 65.9 327 23.2
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 1.6e-08 65.5 335 25.1
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.1e-08 65.1 336 22.3
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 2.7e-08 64.7 212 25.9
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 4.6e-08 63.9 231 25.1
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 6.0e-08 63.5 167 26.9
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 6.0e-08 63.5 259 24.7
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 7.8e-08 63.2 336 23.8
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 1.3e-07 62.4 220 24.5
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 1.7e-07 62.0 335 22.1
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 6.6e-07 60.1 228 25.4
AL1G21402 Arabidopsis lyrata HOM05D002303 ORTHO05D006504 1.9e-06 58.5 182 23.6
CARHR010740 Cardamine hirsuta HOM05D002303 ORTHO05D006504 1.9e-06 58.5 182 23.6
AT1G10580 Arabidopsis thaliana HOM05D002303 ORTHO05D006504 2.5e-06 58.2 182 23.6
GSVIVG01015458001 Vitis vinifera HOM05D000836 ORTHO05D000709 5.6e-06 57.0 217 23.5


User provided reference genes

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