Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 2.7e-200 701.8 357 100.0
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.4e-161 573.2 352 80.4
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 6.0e-160 567.8 357 79.8
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.1e-158 563.5 354 79.7
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.3e-158 562.0 354 79.4
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 1.9e-153 546.2 357 78.2
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 7.9e-152 540.8 357 76.5
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.5e-150 536.6 355 77.2
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 1.9e-150 536.2 357 76.2
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 2.1e-149 532.7 350 77.4
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 2.1e-149 532.7 350 77.1
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 1.8e-148 529.6 349 76.5
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 5.3e-148 528.1 356 74.7
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 7.6e-147 524.2 353 74.2
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 9.9e-147 523.9 356 75.0
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 9.9e-147 523.9 350 75.1
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 1.3e-146 523.5 351 73.5
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.7e-146 523.1 356 74.2
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 8.4e-146 520.8 355 75.5
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 8.4e-146 520.8 356 72.8
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 8.4e-146 520.8 353 73.9
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 1.4e-145 520.0 358 74.3
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 1.9e-145 519.6 350 74.6
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.9e-145 519.6 350 74.3
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 3.2e-145 518.8 353 73.9
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 5.5e-145 518.1 353 73.4
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 5.5e-145 518.1 352 73.9
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 7.1e-145 517.7 353 73.1
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 9.3e-145 517.3 352 72.7
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 1.2e-144 516.9 357 72.3
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 2.7e-144 515.8 349 74.8
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 3.5e-144 515.4 351 73.5
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 3.5e-144 515.4 353 73.4
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 6.0e-144 514.6 353 73.4
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 3.0e-143 512.3 353 73.7
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 3.0e-143 512.3 353 72.5
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 5.1e-143 511.5 367 71.7
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 6.7e-143 511.1 346 74.3
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 8.7e-143 510.8 347 72.9
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 1.1e-142 510.4 348 73.9
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 1.9e-142 509.6 351 72.4
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 1.9e-142 509.6 351 72.6
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 2.5e-142 509.2 347 72.6
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 2.1e-141 506.1 358 71.8
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 2.8e-141 505.8 341 75.1
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 1.8e-140 503.1 358 72.6
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 3.1e-140 502.3 352 72.7
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 4.0e-140 501.9 356 72.8
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 4.0e-140 501.9 360 72.2
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 5.3e-140 501.5 358 69.8
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 1.2e-139 500.4 353 72.2
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.2e-139 500.4 356 71.3
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 1.5e-139 500.0 358 70.4
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 2.6e-139 499.2 354 70.6
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 2.6e-139 499.2 354 70.6
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 2.6e-139 499.2 354 70.6
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 3.4e-139 498.8 352 71.3
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 3.4e-139 498.8 354 70.6
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 3.4e-139 498.8 355 71.0
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 5.8e-139 498.0 355 70.7
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 5.8e-139 498.0 354 70.6
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 7.6e-139 497.7 354 70.6
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 7.6e-139 497.7 354 70.3
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.3e-138 496.9 409 64.3
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 2.2e-138 496.1 351 72.4
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 3.8e-138 495.4 354 70.1
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 6.5e-138 494.6 356 70.2
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 6.5e-138 494.6 355 71.5
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 1.9e-137 493.0 352 70.7
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 4.2e-137 491.9 345 71.6
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 1.2e-136 490.3 337 73.0
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 4.6e-136 488.4 355 69.0
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 7.9e-136 487.6 379 66.5
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.3e-135 486.9 355 69.0
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 5.1e-135 485.0 342 72.8
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 6.7e-135 484.6 355 69.6
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 8.7e-135 484.2 355 71.5
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 1.1e-134 483.8 356 71.1
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 2.5e-134 482.6 341 71.8
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 4.3e-134 481.9 358 68.7
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 1.1e-132 477.2 357 66.9
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 1.2e-131 473.8 346 73.4
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 7.6e-131 471.1 354 67.8
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 7.6e-131 471.1 376 66.0
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 8.5e-130 467.6 355 67.3
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 1.0e-127 460.7 342 65.2
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 4.3e-126 455.3 373 63.3
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 6.3e-125 451.4 302 70.5
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 9.1e-124 447.6 378 64.6
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.2e-123 447.2 357 66.1
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 2.0e-123 446.4 340 64.7
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 4.5e-123 445.3 395 60.0
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 9.4e-121 437.6 351 67.0
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 1.6e-120 436.8 312 71.2
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 3.0e-119 432.6 341 68.3
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 3.9e-119 432.2 299 75.9
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 1.7e-117 426.8 306 71.9
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.8e-117 426.0 341 67.2
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 4.1e-116 422.2 368 62.2
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 5.3e-116 421.8 343 66.2
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 6.9e-116 421.4 317 69.7
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 4.5e-115 418.7 300 68.0
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 1.4e-113 413.7 302 66.6
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 9.4e-113 411.0 278 71.2
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 2.3e-111 406.4 255 76.5
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 2.3e-111 406.4 347 63.1
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 1.5e-110 403.7 255 75.7
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 5.7e-110 401.7 299 69.6
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 3.7e-109 399.1 299 69.6
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.0e-106 391.0 300 68.7
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 5.0e-106 388.7 308 65.9
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 2.3e-103 379.8 356 57.3
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 6.7e-103 378.3 300 65.7
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 3.1e-100 369.4 297 64.6
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 9.1e-100 367.9 236 75.0
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 6.5e-98 361.7 342 52.9
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 3.6e-96 355.9 343 52.5
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 6.1e-96 355.1 258 72.5
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 8.8e-95 351.3 396 53.8
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 9.8e-94 347.8 342 52.0
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.3e-93 347.4 255 71.0
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 1.7e-93 347.1 250 74.4
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 2.2e-90 336.7 336 51.8
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 3.2e-89 332.8 252 69.8
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.2e-88 330.9 261 67.4
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 2.8e-88 329.7 234 73.9
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 9.8e-86 321.2 256 68.0
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 2.4e-84 316.6 304 58.9
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 1.2e-83 314.3 276 54.3
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 6.1e-80 302.0 226 69.9
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 3.0e-79 299.7 191 74.3
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 5.4e-76 288.9 346 45.4
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.3e-71 273.5 231 62.3
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 1.7e-66 257.3 194 68.0
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 6.2e-56 222.2 367 42.2
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 8.4e-53 211.8 199 58.8
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 6.6e-50 202.2 166 66.9
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 3.0e-42 176.8 181 58.6
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 1.5e-30 137.9 99 65.7
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 9.3e-28 128.6 74 74.3
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 9.3e-28 128.6 74 74.3
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 1.2e-27 128.3 74 73.0
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 2.1e-27 127.5 75 74.7
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 6.0e-27 125.9 74 74.3
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 2.1e-24 117.5 63 79.4
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 1.8e-23 114.4 120 56.7
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 3.1e-15 87.0 94 51.1
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 8.2e-08 62.4 50 66.0
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 1.1e-07 62.0 40 75.0


User provided reference genes

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