Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 0.0e+00 1216.4 611 100.0
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 6.0e-277 957.2 591 79.7
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 2.4e-265 918.7 632 72.5
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 5.7e-259 897.5 605 74.5
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 5.5e-254 880.9 668 69.0
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 3.4e-240 835.1 598 70.9
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 2.2e-239 832.4 596 69.8
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 1.1e-238 830.1 595 69.2
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 3.3e-235 818.5 600 68.5
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 8.2e-234 813.9 598 67.4
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 9.1e-233 810.4 595 68.6
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 1.3e-231 806.6 594 69.0
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.7e-231 806.2 669 63.4
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 2.2e-226 789.3 592 67.9
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 8.2e-226 787.3 595 65.7
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 1.4e-225 786.6 606 65.5
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 6.5e-223 777.7 600 65.7
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 4.2e-222 775.0 594 65.7
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 6.1e-221 771.2 599 65.6
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 8.0e-221 770.8 597 66.3
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.0e-220 770.4 595 63.0
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 1.8e-220 769.6 628 62.9
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 4.0e-220 768.5 596 64.4
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 2.6e-219 765.8 593 64.6
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 9.8e-219 763.8 593 64.9
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 2.2e-218 762.7 595 64.0
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 4.8e-218 761.5 593 64.6
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 4.8e-218 761.5 593 63.1
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 3.1e-217 758.8 593 64.4
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 7.0e-217 757.7 620 62.7
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.6e-216 756.5 593 66.4
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 5.9e-216 754.6 593 64.1
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 5.9e-216 754.6 594 64.0
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 2.3e-215 752.7 601 62.2
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 2.9e-215 752.3 597 64.8
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 5.0e-215 751.5 595 63.0
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 1.1e-214 750.4 592 63.5
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 1.6e-213 746.5 593 62.9
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 8.0e-213 744.2 592 63.2
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 1.0e-212 743.8 593 63.7
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 2.3e-212 742.7 596 61.9
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 2.6e-211 739.2 593 63.2
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 1.7e-210 736.5 592 62.7
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 8.3e-210 734.2 595 62.9
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 3.1e-209 732.3 597 62.1
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 4.1e-209 731.9 598 62.2
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.2e-208 730.3 598 62.0
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 2.0e-208 729.6 596 61.4
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 3.5e-208 728.8 598 61.9
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 4.5e-208 728.4 592 62.0
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 2.9e-207 725.7 593 62.9
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 2.5e-206 722.6 594 62.8
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 1.4e-204 716.8 594 62.1
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 2.3e-204 716.1 593 60.7
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 5.2e-204 714.9 614 60.7
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 6.8e-204 714.5 595 60.3
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 1.2e-203 713.8 594 61.3
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 2.6e-203 712.6 595 61.5
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 9.8e-203 710.7 593 62.1
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 2.9e-202 709.1 595 61.8
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 1.8e-201 706.4 594 61.4
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 1.8e-201 706.4 602 58.8
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 3.2e-201 705.7 594 59.9
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 5.4e-201 704.9 593 60.2
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 2.7e-200 702.6 535 66.4
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 6.0e-200 701.4 594 62.5
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 6.0e-200 701.4 602 58.6
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 3.0e-199 699.1 594 60.1
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 3.3e-198 695.7 597 59.3
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 4.3e-198 695.3 593 59.2
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 9.5e-198 694.1 593 61.4
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 2.8e-197 692.6 616 58.8
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 1.8e-196 689.9 593 58.5
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 4.0e-196 688.7 599 59.9
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 2.0e-195 686.4 592 59.3
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 9.8e-195 684.1 595 58.5
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 1.7e-194 683.3 595 59.5
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 2.9e-194 682.6 592 59.5
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 4.9e-194 681.8 600 58.8
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 6.4e-194 681.4 597 59.0
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 3.2e-193 679.1 594 58.4
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 3.2e-193 679.1 594 58.4
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 7.0e-193 677.9 595 58.0
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 1.2e-192 677.2 595 58.2
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 7.3e-190 667.9 595 57.3
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 3.6e-189 665.6 595 57.1
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 3.6e-189 665.6 601 59.1
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 1.2e-187 660.6 623 55.9
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 3.4e-187 659.1 577 60.3
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 3.4e-187 659.1 598 55.9
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 2.2e-186 656.4 595 56.5
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 3.7e-186 655.6 592 56.8
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 2.4e-185 652.9 558 59.5
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 1.2e-184 650.6 592 56.2
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.1e-184 649.8 556 59.7
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 2.7e-184 649.4 561 59.7
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 7.3e-182 641.3 597 54.6
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 2.4e-180 636.3 502 63.9
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 3.6e-173 612.5 600 53.2
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 1.7e-170 603.6 599 54.4
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 1.1e-169 600.9 601 51.7
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 6.2e-165 585.1 604 52.2
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-163 580.9 527 59.6
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 3.2e-161 572.8 592 51.5
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 3.5e-160 569.3 523 56.8
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 3.5e-160 569.3 417 70.0
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 2.3e-159 566.6 523 56.6
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 9.0e-156 554.7 601 47.9
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 1.1e-148 531.2 444 60.1
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 3.9e-143 512.7 548 51.3
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 1.4e-135 487.6 469 56.3
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 1.7e-130 470.7 612 42.3
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.4e-127 461.1 586 46.1
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.4e-124 451.1 601 43.1
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 4.5e-115 419.5 596 42.1
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 9.4e-113 411.8 615 38.9
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 6.1e-112 409.1 396 53.3
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.2e-109 400.6 278 71.9
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 4.1e-108 396.4 304 60.5
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 1.5e-105 387.9 250 76.8
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 6.6e-98 362.5 427 51.3
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 3.0e-95 353.6 274 64.6
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 5.2e-95 352.8 623 36.3
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 8.3e-93 345.5 409 49.1
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 1.0e-82 312.0 608 34.2
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 8.9e-79 298.9 250 64.4
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 5.4e-76 289.7 463 40.6
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 2.7e-67 260.8 284 48.9
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 1.8e-55 221.5 131 73.3
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 6.4e-53 213.0 285 45.3
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 4.6e-51 206.8 165 64.2
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 1.4e-47 195.3 599 28.5
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 4.5e-46 190.3 289 39.4
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 2.1e-43 181.4 140 57.9
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 1.1e-36 159.1 126 65.1
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 3.5e-35 154.1 134 58.2
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 9.0e-31 139.4 389 30.1
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 1.2e-30 139.0 114 63.2
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 5.0e-29 133.7 94 63.8
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 9.3e-28 129.4 135 43.7
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 3.9e-26 124.0 889 22.7
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 6.3e-24 116.7 80 61.2
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.6e-19 102.1 77 68.8
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 5.7e-17 93.6 106 48.1
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 9.1e-15 86.3 88 46.6
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 8.5e-13 79.7 57 59.6
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 2.5e-12 78.2 42 81.0
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 2.5e-12 78.2 42 81.0
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 3.2e-12 77.8 69 53.6
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 4.2e-12 77.4 105 43.8
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 1.6e-11 75.5 113 39.8
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 1.6e-11 75.5 113 39.8
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 2.1e-11 75.1 41 80.5
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 1.1e-09 69.3 57 54.4


User provided reference genes

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