Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 6.3e-171 604.0 299 100.0
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 5.6e-119 431.4 299 72.9
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 1.6e-110 403.3 299 69.2
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 6.5e-99 364.8 298 63.4
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 4.6e-97 358.6 298 61.1
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 3.9e-88 328.9 298 59.1
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 5.1e-88 328.6 252 61.5
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.4e-85 320.5 297 56.6
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 4.1e-85 318.9 207 76.8
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 9.1e-85 317.8 298 56.0
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 7.7e-84 314.7 301 54.8
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 1.3e-83 313.9 303 55.8
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 2.2e-83 313.2 303 55.8
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 8.5e-83 311.2 301 55.5
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 8.8e-80 301.2 196 74.5
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 1.5e-79 300.4 273 56.8
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 9.7e-79 297.7 301 53.2
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 2.2e-78 296.6 266 57.9
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 3.7e-78 295.8 300 51.0
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 8.2e-78 294.7 301 53.2
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 5.3e-77 292.0 294 52.7
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 7.0e-77 291.6 301 52.2
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 3.5e-76 289.3 305 51.8
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 1.3e-75 287.3 298 52.3
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 1.3e-75 287.3 293 51.5
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 1.7e-75 287.0 273 53.5
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.7e-75 287.0 298 49.3
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 5.0e-75 285.4 224 59.4
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 6.5e-75 285.0 298 48.7
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 8.5e-75 284.6 298 49.0
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 2.5e-74 283.1 298 48.3
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 2.5e-74 283.1 278 52.9
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 2.5e-74 283.1 288 52.1
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 3.2e-74 282.7 297 51.5
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 3.2e-74 282.7 298 50.7
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 4.2e-74 282.3 273 53.5
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 1.2e-73 280.8 303 49.5
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 1.2e-73 280.8 301 52.2
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 1.6e-73 280.4 300 51.7
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 2.1e-73 280.0 298 48.3
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 2.7e-73 279.6 297 51.5
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 2.7e-73 279.6 302 49.7
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 4.7e-73 278.9 273 53.1
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 1.8e-72 276.9 252 56.7
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 3.0e-72 276.2 299 48.8
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 3.9e-72 275.8 293 50.5
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 3.9e-72 275.8 275 51.6
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 5.2e-72 275.4 317 46.1
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 5.2e-72 275.4 317 46.1
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 5.2e-72 275.4 297 49.5
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 8.8e-72 274.6 283 50.9
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 1.1e-71 274.2 293 48.8
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.1e-71 274.2 287 50.5
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 2.6e-71 273.1 287 50.2
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 5.7e-71 271.9 298 48.3
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 9.7e-71 271.2 305 48.5
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 1.7e-70 270.4 303 47.5
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 2.2e-70 270.0 292 50.3
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 2.8e-70 269.6 298 49.0
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 6.3e-70 268.5 227 57.7
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 1.4e-69 267.3 302 50.3
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 3.1e-69 266.2 297 48.1
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 2.0e-68 263.5 302 48.7
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 1.3e-67 260.8 279 49.5
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 1.3e-67 260.8 279 49.5
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 3.8e-67 259.2 299 46.5
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 3.8e-67 259.2 286 47.6
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 8.5e-67 258.1 255 52.5
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 1.1e-66 257.7 296 45.9
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 1.1e-66 257.7 306 45.4
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 1.5e-66 257.3 283 48.4
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 1.9e-66 256.9 310 46.1
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.9e-66 256.9 274 48.9
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 4.2e-66 255.8 297 46.5
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 1.2e-65 254.2 380 40.8
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 2.7e-65 253.1 205 61.0
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 1.4e-64 250.8 274 50.7
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 1.8e-64 250.4 304 45.4
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 2.3e-64 250.0 306 46.1
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 3.0e-64 249.6 314 47.5
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 1.2e-63 247.7 251 51.4
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 7.5e-63 245.0 295 44.4
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 1.7e-62 243.8 305 43.6
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 1.8e-61 240.4 308 43.5
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 1.8e-61 240.4 308 43.5
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 2.4e-61 240.0 204 58.3
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 4.1e-61 239.2 301 43.2
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 1.6e-60 237.3 303 45.2
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 2.0e-60 236.9 273 49.1
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 3.5e-60 236.1 307 42.7
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 3.5e-60 236.1 307 42.7
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 5.9e-60 235.3 314 43.0
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 2.2e-59 233.4 319 42.6
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 3.2e-58 229.6 275 46.5
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 1.6e-57 227.3 207 58.5
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 3.6e-57 226.1 236 52.1
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 6.1e-57 225.3 221 52.9
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.0e-56 224.6 176 62.5
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 2.0e-55 220.3 182 59.3
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 2.6e-55 219.9 274 44.5
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 9.8e-55 218.0 312 39.7
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 2.8e-54 216.5 276 46.0
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 4.8e-54 215.7 301 42.5
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 1.4e-53 214.2 221 49.8
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 1.4e-53 214.2 368 37.8
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 1.8e-53 213.8 276 44.9
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 2.7e-52 209.9 212 52.8
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 1.4e-48 197.6 250 44.4
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 1.2e-47 194.5 252 45.2
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 3.4e-47 193.0 268 42.2
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 5.7e-47 192.2 174 57.5
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 8.3e-46 188.3 297 41.1
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 1.8e-45 187.2 179 51.4
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 5.0e-43 179.1 294 38.4
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 1.2e-36 157.9 181 45.9
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 4.3e-34 149.4 182 46.7
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 2.0e-31 140.6 144 50.7
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 1.6e-28 131.0 185 39.5
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 3.3e-26 123.2 82 63.4
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 8.9e-24 115.2 179 41.9
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 1.4e-16 91.3 227 35.2
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 9.2e-13 78.6 50 66.0
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 1.6e-12 77.8 43 79.1
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 3.5e-12 76.6 105 35.2
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 1.3e-11 74.7 105 40.0
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 1.1e-10 71.6 122 36.9
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 9.6e-10 68.6 105 36.2
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 2.8e-09 67.0 40 60.0
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 1.4e-08 64.7 168 34.5


User provided reference genes

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