Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17680 Avicennia marina HOM05D006712 ORTHO05D008219 1.3e-208 729.6 377 100.0
SalBow3G4582 Salvia bowleyana HOM05D006712 ORTHO05D008219 8.3e-136 487.6 380 69.5
Oeu009041.1 Olea europaea HOM05D006712 ORTHO05D008219 4.0e-114 415.6 389 63.0
SGA_v2.0_scaffold92G28138 Striga asiatica HOM05D006712 ORTHO05D008219 4.5e-105 385.6 339 63.4
CAN.G919.48 Capsicum annuum HOM05D006712 ORTHO05D008219 8.4e-104 381.3 373 58.7
CSS0013127 Camellia sinensis var. sinensis HOM05D006712 ORTHO05D008219 5.1e-101 372.1 379 58.0
Nitab4.5_0008897g0020 Nicotiana tabacum HOM05D006712 ORTHO05D008219 6.7e-101 371.7 380 58.9
PGSC0003DMG400005929 Solanum tuberosum HOM05D006712 ORTHO05D008219 1.9e-100 370.2 369 58.5
DCAR_014052 Daucus carota HOM05D006712 ORTHO05D008219 1.6e-99 367.1 385 54.3
Sopen06g030560 Solanum pennellii HOM05D006712 ORTHO05D008219 1.1e-98 364.4 369 58.3
Cc01_g07690 Coffea canephora HOM05D006712 ORTHO05D008219 5.3e-98 362.1 379 56.5
Potri.001G216500 Populus trichocarpa HOM05D006712 ORTHO05D008219 1.2e-97 360.9 368 56.2
Lj1A268G10 Lonicera japonica HOM05D006712 ORTHO05D008219 1.5e-97 360.5 386 56.7
unitig_27.g25124 Utricularia gibba HOM05D006712 ORTHO05D008219 6.5e-96 355.1 378 53.7
Peaxi162Scf00098g00079 Petunia axillaris HOM05D006712 ORTHO05D008219 9.3e-95 351.3 370 55.1
Hund20948 Selenicereus undatus HOM05D006712 ORTHO05D008219 5.1e-93 345.5 391 53.5
Hma1.2p1_0101F.1_g049480 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 1.1e-92 344.4 369 56.6
Ciclev10028702m.g Citrus clementina HOM05D006712 ORTHO05D008219 1.9e-92 343.6 370 54.9
Dinv18839 Davidia involucrata HOM05D006712 ORTHO05D008219 1.3e-91 340.9 371 55.0
Nitab4.5_0000380g0060 Nicotiana tabacum HOM05D006712 ORTHO05D008219 6.3e-91 338.6 422 50.9
Migut.N02451 Erythranthe guttata HOM05D006712 ORTHO05D008219 4.1e-90 335.9 287 64.5
Rhsim13G0196500 Rhododendron simsii HOM05D006712 ORTHO05D008219 6.9e-90 335.1 464 48.1
Manes.11G101400 Manihot esculenta HOM05D006712 ORTHO05D008219 1.2e-89 334.3 381 52.2
Eucgr.B03815 Eucalyptus grandis HOM05D006712 ORTHO05D008219 1.5e-89 334.0 382 52.4
Thecc.09G272000 Theobroma cacao HOM05D006712 ORTHO05D008219 3.4e-89 332.8 374 54.5
Sc21g0006790 Simmondsia chinensis HOM05D006712 ORTHO05D008219 7.6e-89 331.6 367 50.1
Gohir.A09G099400 Gossypium hirsutum HOM05D006712 ORTHO05D008219 1.7e-88 330.5 378 52.9
CiPaw.13G129200 Carya illinoinensis HOM05D006712 ORTHO05D008219 2.2e-88 330.1 377 52.0
Cfa010172 Carpinus fangiana HOM05D006712 ORTHO05D008219 1.1e-87 327.8 373 52.3
RcHm_v2.0_Chr5g0048501 Rosa chinensis HOM05D006712 ORTHO05D008219 1.9e-87 327.0 373 54.4
Atru.chr3.3110 Acer truncatum HOM05D006712 ORTHO05D008219 3.2e-87 326.2 385 52.5
COL.COLO4_25432 Corchorus olitorius HOM05D006712 ORTHO05D008219 1.2e-86 324.3 379 52.2
FAN16G2749 Fragaria x ananassa HOM05D006712 ORTHO05D008219 1.2e-86 324.3 375 53.3
FAN11G0164 Fragaria x ananassa HOM05D006712 ORTHO05D008219 1.6e-86 323.9 374 52.9
Duzib168G2384 Durio zibethinus HOM05D006712 ORTHO05D008219 3.9e-85 319.3 387 51.9
Gorai.006G115800 Gossypium raimondii HOM05D006712 ORTHO05D008219 5.1e-85 318.9 394 50.8
AUR62020228 Chenopodium quinoa HOM05D006712 ORTHO05D008219 3.3e-84 316.2 377 50.9
AL6G33100 Arabidopsis lyrata HOM05D006712 ORTHO05D008219 1.8e-82 310.5 379 48.8
CsaV3_1G043820 Cucumis sativus L. HOM05D006712 ORTHO05D008219 4.1e-82 309.3 376 50.5
AUR62001554 Chenopodium quinoa HOM05D006712 ORTHO05D008219 2.0e-81 307.0 379 51.7
Lalb_Chr19g0136261 Lupinus albus HOM05D006712 ORTHO05D008219 4.5e-81 305.8 388 50.3
arahy.Tifrunner.gnm1.ann1.4CVW1F Arachis hypogaea HOM05D006712 ORTHO05D008219 2.9e-80 303.1 390 49.2
CARHR191410 Cardamine hirsuta HOM05D006712 ORTHO05D008219 1.4e-79 300.8 368 49.5
EL10Ac7g16293 Beta vulgaris HOM05D006712 ORTHO05D008219 3.2e-79 299.7 411 48.2
MELO3C015061.2 Cucumis melo HOM05D006712 ORTHO05D008219 3.2e-79 299.7 383 48.6
Sp6g23080 Schrenkiella parvula HOM05D006712 ORTHO05D008219 3.2e-79 299.7 380 48.7
TWI31G0890 Tripterygium wilfordii HOM05D006712 ORTHO05D008219 3.2e-79 299.7 379 47.8
Aqoxy1G00652 Aquilegia oxysepala HOM05D006712 ORTHO05D008219 4.2e-79 299.3 367 50.4
Glyma.11G178255 Glycine max HOM05D006712 ORTHO05D008219 5.5e-79 298.9 374 50.3
THA.LOC104810933 Tarenaya hassleriana HOM05D006712 ORTHO05D008219 5.5e-79 298.9 369 49.9
BolC3t13693H Brassica oleracea HOM05D006712 ORTHO05D008219 7.2e-79 298.5 377 49.3
Lj3g0027754 Lotus japonicus HOM05D006712 ORTHO05D008219 7.2e-79 298.5 381 49.9
Lalb_Chr03g0028431 Lupinus albus HOM05D006712 ORTHO05D008219 9.4e-79 298.1 391 49.6
Sed0013977 Sechium edule HOM05D006712 ORTHO05D008219 9.4e-79 298.1 379 48.8
ClCG03G012180 Citrullus lanatus HOM05D006712 ORTHO05D008219 1.2e-78 297.7 419 46.3
AT5G22120 Arabidopsis thaliana HOM05D006712 ORTHO05D008219 1.6e-78 297.4 384 48.4
BcaC01g06601 Brassica carinata HOM05D006712 ORTHO05D008219 1.6e-78 297.4 374 48.7
Aa31LG1G13310 Aethionema arabicum HOM05D006712 ORTHO05D008219 6.1e-78 295.4 386 46.4
C03p12200 Brassica napus HOM05D006712 ORTHO05D008219 6.1e-78 295.4 371 49.9
Carub.0006s1976 Capsella rubella HOM05D006712 ORTHO05D008219 7.9e-78 295.0 380 47.1
TAR623G0680 Trochodendron aralioides HOM05D006712 ORTHO05D008219 1.4e-77 294.3 370 51.1
VMungo1127G0962 Vigna mungo HOM05D006712 ORTHO05D008219 1.4e-77 294.3 372 50.0
GSVIVG01037582001 Vitis vinifera HOM05D006712 ORTHO05D008219 1.4e-77 294.3 246 63.8
A03p10600 Brassica napus HOM05D006712 ORTHO05D008219 1.8e-77 293.9 366 49.2
BcaB01g04741 Brassica carinata HOM05D006712 ORTHO05D008219 5.1e-77 292.4 373 48.8
BraA03t10372Z Brassica rapa HOM05D006712 ORTHO05D008219 1.1e-76 291.2 366 48.6
Gohir.D09G098800 Gossypium hirsutum HOM05D006712 ORTHO05D008219 7.4e-76 288.5 231 66.2
Phvul.011G099200 Phaseolus vulgaris HOM05D006712 ORTHO05D008219 3.7e-75 286.2 374 49.2
Glyma.12G094900 Glycine max HOM05D006712 ORTHO05D008219 8.2e-75 285.0 373 49.1
PSO384G4991 Papaver somniferum HOM05D006712 ORTHO05D008219 1.8e-74 283.9 383 49.1
Actinidia24254 Actinidia chinensis HOM05D006712 ORTHO05D008219 9.1e-74 281.6 384 48.4
PSO339G1919 Papaver somniferum HOM05D006712 ORTHO05D008219 7.7e-73 278.5 378 48.9
GSVIVG01024643001 Vitis vinifera HOM05D006712 ORTHO05D008219 1.1e-71 274.6 239 61.9
arahy.Tifrunner.gnm1.ann1.UJS8TC Arachis hypogaea HOM05D006712 ORTHO05D008219 7.9e-70 268.5 390 46.7
MD14G1087800 Malus domestica HOM05D006712 ORTHO05D008219 1.7e-67 260.8 234 60.7
vmacro03955 Vaccinium macrocarpon HOM05D006712 ORTHO05D008219 3.1e-66 256.5 472 41.5
Actinidia07277 Actinidia chinensis HOM05D006712 ORTHO05D008219 7.7e-65 251.9 252 59.9
Hma1.2p1_0101F.1_g049490 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 8.5e-64 248.4 232 62.9
Ca_19473_v3 Cicer arietinum L. HOM05D006712 ORTHO05D008219 4.2e-63 246.1 385 44.7
FvH4_3g26410 Fragaria vesca HOM05D006712 ORTHO05D008219 2.1e-62 243.8 373 46.4
HanXRQChr04g0096771 Helianthus annuus HOM05D006712 ORTHO05D008219 6.1e-62 242.3 267 54.3
Lsat_1_v5_gn_2_34521 Lactuca sativa HOM05D006712 ORTHO05D008219 4.8e-59 232.6 258 53.5
HPP92_002650 Vanilla planifolia HOM05D006712 ORTHO05D008219 1.4e-58 231.1 386 43.3
ECA238G0730 Erigeron canadensis HOM05D006712 ORTHO05D008219 3.1e-58 229.9 235 56.6
Sabra16G0127200 Salix brachista HOM05D006712 ORTHO05D008219 3.1e-58 229.9 276 50.7
Thhalv10013868m.g Eutrema salsugineum HOM05D006712 ORTHO05D008219 7.0e-58 228.8 351 41.0
Zm00001eb282230 Zea mays HOM05D006712 ORTHO05D008219 9.1e-58 228.4 378 40.7
Medtr4g051518 Medicago truncatula HOM05D006712 ORTHO05D008219 4.5e-57 226.1 246 52.0
QL01p019587 Quercus lobata HOM05D006712 ORTHO05D008219 2.1e-54 217.2 145 77.2
MBI17_g02433_MAGBIO Magnolia biondii HOM05D006712 ORTHO05D008219 4.7e-54 216.1 288 48.3
Psat7g204400 Pisum sativum HOM05D006712 ORTHO05D008219 4.0e-53 213.0 245 51.0
Cpa.g.sc103.11 Carica papaya HOM05D006712 ORTHO05D008219 2.6e-52 210.3 322 42.9
CDE06G0581 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 3.7e-51 206.5 300 43.0
BcaB08g36451 Brassica carinata HOM05D002527 ORTHO05D008219 1.4e-50 204.5 248 49.6
Os01g0965600 Oryza sativa ssp. japonica HOM05D006712 ORTHO05D008219 1.7e-48 197.6 243 51.9
BcaC04g19542 Brassica carinata HOM05D006712 ORTHO05D008219 5.0e-48 196.1 228 53.1
Nn6g34683 Nelumbo nucifera HOM05D006712 ORTHO05D008219 5.2e-45 186.0 390 37.4
TPR.G4637 Trifolium pratense HOM05D006712 ORTHO05D008219 8.8e-45 185.3 292 43.8
Haze_23559 Corylus avellana HOM05D006712 ORTHO05D008219 3.4e-44 183.3 285 41.8
Prupe.7G038700 Prunus persica HOM05D006712 ORTHO05D008219 1.8e-42 177.6 255 47.1
Ah.15g099020 Amaranthus hybridus HOM05D006712 ORTHO05D008219 3.5e-41 173.3 287 42.5
SHI25255 Sapria himalayana HOM05D000265 ORTHO05D000161 1.5e-36 157.9 225 42.2
Mapoly0027s0100 Marchantia polymorpha HOM05D006712 ORTHO05D008219 5.7e-36 156.0 392 31.6
SEGI_35195 Sequoiadendron giganteum HOM05D006712 ORTHO05D008219 5.7e-36 156.0 234 42.3
SMO119G0218 Selaginella moellendorffii HOM05D006712 ORTHO05D008219 3.0e-32 143.7 345 33.6
Pp3c7_620 Physcomitrium patens HOM05D006712 ORTHO05D008219 2.5e-31 140.6 390 32.3
ATR0772G163 Amborella trichopoda HOM05D006712 ORTHO05D008219 7.3e-31 139.0 295 40.0
Thecc.09G272200 Theobroma cacao HOM05D006712 ORTHO05D008219 7.3e-31 139.0 155 52.3
C09p54580 Brassica napus HOM05D006712 ORTHO05D008219 6.8e-29 132.5 150 52.7
BolC9t58325H Brassica oleracea HOM05D006712 ORTHO05D008219 6.8e-29 132.5 150 52.7
BraA10t43946Z Brassica rapa HOM05D006712 ORTHO05D008219 6.4e-27 125.9 193 44.6
QL01p019597 Quercus lobata HOM05D006712 ORTHO05D008219 3.5e-25 120.2 213 38.5
BcaC04g19541 Brassica carinata HOM05D002527 ORTHO05D002865 4.3e-23 113.2 112 58.9
AagrBONN_evm.TU.Sc2ySwM_117.1746 Anthoceros agrestis HOM05D006712 ORTHO05D008219 1.6e-22 111.3 196 38.8
A10p18660 Brassica napus HOM05D002527 ORTHO05D002865 1.6e-22 111.3 186 41.4
ATR0772G219 Amborella trichopoda HOM05D006712 ORTHO05D008219 2.0e-20 104.4 92 60.9
Sabra16G0127300 Salix brachista HOM05D006712 ORTHO05D008219 1.3e-19 101.7 97 57.7
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 1.9e-18 97.8 97 51.5
FAN21G2251 Fragaria x ananassa HOM05D006712 ORTHO05D008219 4.6e-17 93.2 63 73.0
CBR_g40336 Chara braunii HOM05D006712 ORTHO05D008219 3.6e-14 83.6 281 30.2
CDE07G1644 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 8.9e-13 79.0 62 62.9
BcaC01g06603 Brassica carinata HOM05D006712 ORTHO05D008219 1.1e-10 72.0 72 56.9
C09p54560 Brassica napus HOM05D000021 ORTHO05D000010 4.6e-09 66.6 128 36.7
BolC9t58324H Brassica oleracea HOM05D000021 ORTHO05D000010 4.6e-09 66.6 128 36.7
Duzib170G0178 Durio zibethinus HOM05D006712 ORTHO05D008219 7.8e-09 65.9 92 42.4


User provided reference genes

Program Settings